Wall clock time and date at job start Wed Apr 1 2020 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.51840 * 2 1 4 4 C 1.53193 * 109.49740 * 120.08097 * 2 1 3 5 5 N 1.46924 * 108.77278 * 174.58867 * 4 2 1 6 6 C 1.36934 * 120.63094 * 126.37002 * 5 4 2 7 7 H 1.08001 * 120.00188 * 332.62851 * 6 5 4 8 8 C 1.38809 * 120.00302 * 152.62364 * 6 5 4 9 9 N 1.31617 * 120.00213 * 159.37131 * 8 6 5 10 10 Si 1.86799 * 119.99815 * 339.37793 * 8 6 5 11 11 H 1.48502 * 109.47406 * 92.92467 * 10 8 6 12 12 H 1.48504 * 109.47139 * 212.92608 * 10 8 6 13 13 H 1.48494 * 109.47265 * 332.92336 * 10 8 6 14 14 C 1.46920 * 118.74039 * 306.38743 * 5 4 2 15 15 C 1.53169 * 108.76394 * 53.61519 * 14 5 4 16 16 C 1.53032 * 109.49811 * 239.92301 * 2 1 3 17 17 H 1.09004 * 109.45977 * 298.70071 * 16 2 1 18 18 N 1.46500 * 109.46541 * 58.67290 * 16 2 1 19 19 C 1.34774 * 120.00234 * 205.03056 * 18 16 2 20 20 O 1.21615 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.47422 * 119.99943 * 180.02562 * 19 18 16 22 22 N 1.36066 * 126.45092 * 359.68247 * 21 19 18 23 23 C 1.29928 * 108.47997 * 179.86161 * 22 21 19 24 24 O 1.34053 * 109.24231 * 0.41016 * 23 22 21 25 25 C 1.34248 * 108.22444 * 359.74292 * 24 23 22 26 26 C 1.50709 * 126.52541 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.46835 * 269.95821 * 26 25 24 28 28 F 1.39905 * 109.46807 * 29.95587 * 26 25 24 29 29 F 1.39892 * 109.47208 * 149.95734 * 26 25 24 30 30 H 1.09002 * 109.46783 * 180.08144 * 1 2 3 31 31 H 1.08994 * 109.47103 * 300.07841 * 1 2 3 32 32 H 1.08997 * 109.47158 * 60.08080 * 1 2 3 33 33 H 1.08998 * 109.58377 * 294.37512 * 4 2 1 34 34 H 1.09002 * 109.58403 * 54.79808 * 4 2 1 35 35 H 0.97003 * 120.00155 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.59216 * 173.39518 * 14 5 4 37 37 H 1.08997 * 109.59165 * 293.82602 * 14 5 4 38 38 H 1.09008 * 109.47730 * 185.40840 * 15 14 5 39 39 H 1.08997 * 109.50673 * 65.31812 * 15 14 5 40 40 H 0.97003 * 119.99636 * 25.02890 * 18 16 2 41 41 H 1.08004 * 125.37854 * 180.18656 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1695 6 6 4.2936 -0.3784 2.1940 7 1 3.9446 0.4184 2.8342 8 6 5.5420 -0.9457 2.4099 9 7 6.4552 -0.2871 3.0916 10 14 5.9260 -2.6437 1.7327 11 1 6.5609 -2.5120 0.3968 12 1 6.8542 -3.3461 2.6549 13 1 4.6681 -3.4231 1.6083 14 6 4.1054 -1.4266 -0.0307 15 6 3.5709 -0.6949 -1.2656 16 6 2.0409 -0.7230 -1.2483 17 1 1.6968 -1.7572 -1.2353 18 7 1.5268 -0.0527 -2.4453 19 6 1.3983 -0.7380 -3.5987 20 8 1.7094 -1.9127 -3.6459 21 6 0.8815 -0.0633 -4.8033 22 7 0.4916 1.2369 -4.8971 23 6 0.1002 1.4626 -6.1153 24 8 0.2137 0.3353 -6.8318 25 6 0.6991 -0.6252 -6.0293 26 6 0.9877 -2.0538 -6.4130 27 9 -0.1519 -2.8349 -6.1932 28 9 1.3386 -2.1113 -7.7661 29 9 2.0441 -2.5411 -5.6361 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1579 2.1388 34 1 1.6053 -1.7216 1.2980 35 1 7.3277 -0.6834 3.2421 36 1 5.1896 -1.3245 0.0137 37 1 3.8377 -2.4817 -0.0868 38 1 3.9337 -1.1896 -2.1666 39 1 3.9159 0.3390 -1.2537 40 1 1.2790 0.8844 -2.4077 41 1 -0.2629 2.4080 -6.4904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942200232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:29 Heat of formation + Delta-G solvation = -125.157069 kcal Electronic energy + Delta-G solvation = -31760.113389 eV Core-core repulsion = 26842.316462 eV Total energy + Delta-G solvation = -4917.796927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.49833 -48.07643 -47.90080 -44.20890 -40.02308 -37.98913 -35.61713 -34.81381 -32.74994 -32.09223 -31.61799 -30.26556 -27.12445 -26.38856 -25.37292 -24.14394 -22.91077 -22.06728 -21.44449 -20.76085 -20.00815 -19.20195 -19.00021 -18.61711 -17.99476 -17.34975 -16.79180 -16.49890 -16.19483 -15.14098 -15.07059 -14.91236 -14.82896 -14.52817 -14.47012 -14.39697 -14.22939 -14.05553 -13.88202 -13.57664 -13.48469 -13.18398 -13.07268 -12.75518 -12.19922 -12.04681 -11.94875 -11.67524 -11.60206 -11.54608 -11.05443 -10.63513 -10.59111 -10.33519 -10.14294 -10.06659 -10.03143 -9.80632 -9.50333 -8.91912 -8.61232 -7.00248 -5.95277 -3.31664 0.09932 1.19136 1.42271 2.48805 2.77792 2.92068 3.21015 3.35199 3.40545 3.51135 3.54553 3.81810 3.89519 4.19566 4.53905 4.55681 4.76354 4.89373 4.95788 5.22900 5.29836 5.31602 5.42209 5.67046 5.82395 5.84863 5.99227 6.06248 6.07920 6.21529 6.33858 6.37583 6.54208 6.57976 6.62846 6.67742 6.68294 6.90488 7.40589 7.94623 7.99164 8.31955 8.92636 9.71449 10.08335 11.20475 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.003065 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.116956 B = 9132.682141 C = 9933.521666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.155 3.845 17 H 0.088 0.912 18 N -0.694 5.694 19 C 0.582 3.418 20 O -0.510 6.510 21 C 0.025 3.975 22 N -0.463 5.463 23 C 0.221 3.779 24 O -0.172 6.172 25 C -0.088 4.088 26 C 0.564 3.436 27 F -0.160 7.160 28 F -0.169 7.169 29 F -0.122 7.122 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.407 0.593 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 3.320 -21.415 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.711 3.289 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.194 1.194 14 C 0.003 3.997 15 C -0.183 4.183 16 C 0.052 3.948 17 H 0.106 0.894 18 N -0.343 5.343 19 C 0.364 3.636 20 O -0.385 6.385 21 C -0.098 4.098 22 N -0.192 5.192 23 C -0.007 4.007 24 O -0.058 6.058 25 C -0.146 4.146 26 C 0.508 3.492 27 F -0.141 7.141 28 F -0.150 7.150 29 F -0.102 7.102 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.242 0.758 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -15.656 2.874 -20.850 26.231 hybrid contribution 0.184 -0.789 -1.118 1.381 sum -15.472 2.084 -21.968 26.950 Atomic orbital electron populations 1.21779 0.95345 1.01717 1.01273 1.21983 0.94943 1.01016 0.95741 0.90375 1.20923 0.84380 0.97069 0.94475 1.44401 1.00749 1.71807 1.15977 1.18906 0.97872 1.14034 1.08176 0.89616 1.25264 0.96396 0.98040 0.97720 1.69834 1.04427 1.37062 1.43747 0.86983 0.77836 0.86965 0.77091 1.21560 1.23117 1.19430 1.21322 0.98252 0.94758 0.85404 1.22424 0.94062 1.02213 0.99571 1.21176 0.94269 0.97253 0.82084 0.89387 1.46055 1.63897 1.14872 1.09494 1.16744 0.79001 0.86052 0.81770 1.90963 1.49534 1.14494 1.83557 1.22012 1.02466 0.90516 0.94813 1.70970 1.14931 1.13659 1.19654 1.28534 0.96668 0.90469 0.85020 1.84382 1.62371 1.18619 1.40378 1.23195 1.08445 0.91660 0.91312 1.16487 0.76140 0.81569 0.74967 1.93285 1.50646 1.75761 1.94409 1.93260 1.92069 1.96661 1.33037 1.93477 1.55543 1.87680 1.73523 0.92809 0.92351 0.93248 0.91276 0.95592 0.92746 0.90622 0.95339 0.92130 0.91415 0.75784 0.71466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.03 37.16 0.34 -1.41 16 2 C -0.12 -1.76 2.46 -90.50 -0.22 -1.98 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.16 2.97 5.80 -3.71 -0.02 2.95 16 5 N -0.61 -14.12 2.77 -172.34 -0.48 -14.59 16 6 C -0.26 -7.21 10.03 -15.06 -0.15 -7.36 16 7 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.02 0.72 5.23 -17.43 -0.09 0.62 16 9 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 10 Si 0.88 22.56 24.34 -169.99 -4.14 18.43 16 11 H -0.29 -7.18 6.62 56.52 0.37 -6.80 16 12 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 13 H -0.27 -6.80 6.63 56.52 0.37 -6.43 16 14 C 0.13 2.84 4.20 -3.73 -0.02 2.82 16 15 C -0.14 -2.61 5.65 -26.62 -0.15 -2.76 16 16 C 0.16 2.45 1.88 -67.89 -0.13 2.32 16 17 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.69 -9.32 4.36 -54.84 -0.24 -9.56 16 19 C 0.58 8.33 7.73 -12.52 -0.10 8.23 16 20 O -0.51 -8.67 12.81 5.26 0.07 -8.60 16 21 C 0.02 0.29 6.96 -83.02 -0.58 -0.29 16 22 N -0.46 -4.33 11.06 -11.48 -0.13 -4.46 16 23 C 0.22 1.25 13.19 51.96 0.69 1.93 16 24 O -0.17 -1.40 10.72 6.53 0.07 -1.33 16 25 C -0.09 -0.97 6.75 -35.08 -0.24 -1.21 16 26 C 0.56 6.59 3.34 36.01 0.12 6.71 16 27 F -0.16 -1.89 17.30 2.25 0.04 -1.85 16 28 F -0.17 -1.81 17.30 2.25 0.04 -1.77 16 29 F -0.12 -1.71 13.49 2.25 0.03 -1.68 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 33 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.08 1.83 4.49 -51.93 -0.23 1.60 16 37 H 0.03 0.64 7.08 -51.93 -0.37 0.27 16 38 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.41 4.75 8.04 -40.82 -0.33 4.42 16 41 H 0.27 -0.13 8.06 -52.48 -0.42 -0.56 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -33.20 346.48 -3.98 -37.18 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.69 Total: -0.62 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.55 Total: 10.59 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.07 Total: -55.57 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.14 Total: -9.93 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.20 -3.98 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942200232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.978 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds