Wall clock time and date at job start Wed Apr 1 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.51840 * 2 1 4 4 C 1.53193 * 109.49740 * 120.08097 * 2 1 3 5 5 N 1.46924 * 108.77278 * 174.58867 * 4 2 1 6 6 C 1.36934 * 120.63094 * 126.37002 * 5 4 2 7 7 H 1.08001 * 120.00188 * 332.62851 * 6 5 4 8 8 C 1.38809 * 120.00302 * 152.62364 * 6 5 4 9 9 N 1.31617 * 120.00213 * 159.37131 * 8 6 5 10 10 Si 1.86799 * 119.99815 * 339.37793 * 8 6 5 11 11 H 1.48502 * 109.47406 * 92.92467 * 10 8 6 12 12 H 1.48504 * 109.47139 * 212.92608 * 10 8 6 13 13 H 1.48494 * 109.47265 * 332.92336 * 10 8 6 14 14 C 1.46920 * 118.74039 * 306.38743 * 5 4 2 15 15 C 1.53169 * 108.76394 * 53.61519 * 14 5 4 16 16 C 1.53032 * 109.49811 * 239.92301 * 2 1 3 17 17 H 1.09004 * 109.45977 * 298.70071 * 16 2 1 18 18 N 1.46500 * 109.46541 * 58.67290 * 16 2 1 19 19 C 1.34774 * 120.00234 * 205.03056 * 18 16 2 20 20 O 1.21615 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.47422 * 119.99943 * 180.02562 * 19 18 16 22 22 N 1.36066 * 126.45092 * 359.68247 * 21 19 18 23 23 C 1.29928 * 108.47997 * 179.86161 * 22 21 19 24 24 O 1.34053 * 109.24231 * 0.41016 * 23 22 21 25 25 C 1.34248 * 108.22444 * 359.74292 * 24 23 22 26 26 C 1.50709 * 126.52541 * 180.02562 * 25 24 23 27 27 F 1.39901 * 109.46835 * 269.95821 * 26 25 24 28 28 F 1.39905 * 109.46807 * 29.95587 * 26 25 24 29 29 F 1.39892 * 109.47208 * 149.95734 * 26 25 24 30 30 H 1.09002 * 109.46783 * 180.08144 * 1 2 3 31 31 H 1.08994 * 109.47103 * 300.07841 * 1 2 3 32 32 H 1.08997 * 109.47158 * 60.08080 * 1 2 3 33 33 H 1.08998 * 109.58377 * 294.37512 * 4 2 1 34 34 H 1.09002 * 109.58403 * 54.79808 * 4 2 1 35 35 H 0.97003 * 120.00155 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.59216 * 173.39518 * 14 5 4 37 37 H 1.08997 * 109.59165 * 293.82602 * 14 5 4 38 38 H 1.09008 * 109.47730 * 185.40840 * 15 14 5 39 39 H 1.08997 * 109.50673 * 65.31812 * 15 14 5 40 40 H 0.97003 * 119.99636 * 25.02890 * 18 16 2 41 41 H 1.08004 * 125.37854 * 180.18656 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0414 -0.7238 1.2496 5 7 3.5047 -0.8290 1.1695 6 6 4.2936 -0.3784 2.1940 7 1 3.9446 0.4184 2.8342 8 6 5.5420 -0.9457 2.4099 9 7 6.4552 -0.2871 3.0916 10 14 5.9260 -2.6437 1.7327 11 1 6.5609 -2.5120 0.3968 12 1 6.8542 -3.3461 2.6549 13 1 4.6681 -3.4231 1.6083 14 6 4.1054 -1.4266 -0.0307 15 6 3.5709 -0.6949 -1.2656 16 6 2.0409 -0.7230 -1.2483 17 1 1.6968 -1.7572 -1.2353 18 7 1.5268 -0.0527 -2.4453 19 6 1.3983 -0.7380 -3.5987 20 8 1.7094 -1.9127 -3.6459 21 6 0.8815 -0.0633 -4.8033 22 7 0.4916 1.2369 -4.8971 23 6 0.1002 1.4626 -6.1153 24 8 0.2137 0.3353 -6.8318 25 6 0.6991 -0.6252 -6.0293 26 6 0.9877 -2.0538 -6.4130 27 9 -0.1519 -2.8349 -6.1932 28 9 1.3386 -2.1113 -7.7661 29 9 2.0441 -2.5411 -5.6361 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.7638 -0.1579 2.1388 34 1 1.6053 -1.7216 1.2980 35 1 7.3277 -0.6834 3.2421 36 1 5.1896 -1.3245 0.0137 37 1 3.8377 -2.4817 -0.0868 38 1 3.9337 -1.1896 -2.1666 39 1 3.9159 0.3390 -1.2537 40 1 1.2790 0.8844 -2.4077 41 1 -0.2629 2.4080 -6.4904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942200232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:28 Heat of formation + Delta-G solvation = -150.887681 kcal Electronic energy + Delta-G solvation = -31761.229152 eV Core-core repulsion = 26842.316462 eV Total energy + Delta-G solvation = -4918.912690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.39924 -48.94972 -48.85434 -44.87046 -41.22464 -39.41892 -36.42920 -36.26707 -34.25794 -33.38581 -32.86556 -31.89286 -28.11090 -27.81313 -26.75590 -25.19859 -23.95165 -23.26416 -23.04949 -21.81767 -21.26835 -20.17678 -19.87672 -19.52768 -18.99664 -18.68102 -18.04164 -17.70409 -17.16312 -16.74873 -16.20535 -16.11441 -15.82131 -15.75398 -15.48360 -15.35511 -15.24491 -15.17799 -15.04015 -14.96368 -14.86406 -14.70085 -14.32105 -14.01157 -13.78043 -13.61017 -13.31695 -12.84315 -12.82331 -12.67437 -12.25367 -12.22634 -12.12024 -11.96470 -11.75774 -11.50602 -11.48912 -11.25089 -10.82032 -10.74865 -10.14679 -8.97121 -8.17537 -5.49020 -0.68875 0.45451 0.79791 1.29216 1.40124 1.48370 1.65750 1.80961 1.91472 2.40374 2.44098 2.75526 2.96989 3.00388 3.03174 3.30057 3.36868 3.64248 3.79946 3.87999 4.07543 4.11673 4.20409 4.39318 4.55554 4.58287 4.70743 4.79210 4.83456 4.88004 4.89749 5.04064 5.09430 5.16928 5.28182 5.35195 5.50618 5.85806 5.94581 6.12646 6.35698 6.89487 6.92656 7.60582 8.01649 9.02067 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.003065 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.116956 B = 9132.682141 C = 9933.521666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.077 0.923 4 C 0.152 3.848 5 N -0.619 5.619 6 C -0.245 4.245 7 H 0.061 0.939 8 C -0.030 4.030 9 N -0.954 5.954 10 Si 0.937 3.063 11 H -0.280 1.280 12 H -0.309 1.309 13 H -0.263 1.263 14 C 0.126 3.874 15 C -0.132 4.132 16 C 0.166 3.834 17 H 0.078 0.922 18 N -0.683 5.683 19 C 0.580 3.420 20 O -0.541 6.541 21 C 0.014 3.986 22 N -0.489 5.489 23 C 0.256 3.744 24 O -0.168 6.168 25 C -0.096 4.096 26 C 0.563 3.437 27 F -0.163 7.163 28 F -0.164 7.164 29 F -0.140 7.140 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.418 0.582 41 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.524 4.393 -23.811 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.095 0.905 4 C 0.027 3.973 5 N -0.343 5.343 6 C -0.375 4.375 7 H 0.079 0.921 8 C -0.225 4.225 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.207 1.207 12 H -0.238 1.238 13 H -0.188 1.188 14 C 0.000 4.000 15 C -0.172 4.172 16 C 0.061 3.939 17 H 0.096 0.904 18 N -0.333 5.333 19 C 0.364 3.636 20 O -0.419 6.419 21 C -0.108 4.108 22 N -0.216 5.216 23 C 0.030 3.970 24 O -0.054 6.054 25 C -0.154 4.154 26 C 0.507 3.493 27 F -0.145 7.145 28 F -0.146 7.146 29 F -0.121 7.121 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.255 0.745 41 H 0.343 0.657 Dipole moment (debyes) X Y Z Total from point charges -18.168 3.965 -23.275 29.791 hybrid contribution 0.844 -1.004 -0.449 1.386 sum -17.323 2.961 -23.724 29.524 Atomic orbital electron populations 1.21714 0.92444 1.02290 1.02791 1.21787 0.97147 1.00012 0.93405 0.90490 1.21145 0.81674 0.98017 0.96489 1.44523 1.02445 1.71868 1.15450 1.18899 0.97919 1.12562 1.08082 0.92139 1.25808 0.96691 1.00939 0.99054 1.69944 1.04991 1.38538 1.46559 0.86063 0.77616 0.83061 0.76598 1.20732 1.23825 1.18790 1.21278 0.96983 0.95201 0.86516 1.22253 0.96075 1.01318 0.97591 1.20865 0.92392 0.97181 0.83424 0.90407 1.45793 1.63613 1.15244 1.08670 1.17054 0.78345 0.85772 0.82451 1.90951 1.50779 1.15971 1.84189 1.21608 1.03488 0.91817 0.93926 1.70974 1.16722 1.12236 1.21704 1.29935 0.92715 0.90824 0.83514 1.84428 1.62128 1.18768 1.40104 1.22885 1.09400 0.91676 0.91456 1.16545 0.75601 0.82208 0.74910 1.93271 1.50673 1.76058 1.94451 1.93263 1.92019 1.96700 1.32573 1.93435 1.56430 1.88092 1.74102 0.92720 0.91124 0.91470 0.91324 0.94764 0.92967 0.93079 0.95301 0.91977 0.91690 0.74463 0.65661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.03 71.98 0.65 -2.22 16 2 C -0.10 -2.93 2.46 -10.72 -0.03 -2.96 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.15 5.54 5.80 86.36 0.50 6.05 16 5 N -0.62 -28.75 2.77 -699.17 -1.94 -30.68 16 6 C -0.25 -13.73 10.03 84.03 0.84 -12.89 16 7 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 8 C -0.03 -1.76 5.23 84.86 0.44 -1.31 16 9 N -0.95 -60.01 13.97 21.65 0.30 -59.71 16 10 Si 0.94 47.60 24.34 68.60 1.67 49.27 16 11 H -0.28 -13.72 6.62 99.48 0.66 -13.07 16 12 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 13 H -0.26 -12.93 6.63 99.48 0.66 -12.27 16 14 C 0.13 5.52 4.20 86.36 0.36 5.88 16 15 C -0.13 -4.75 5.65 30.66 0.17 -4.57 16 16 C 0.17 4.99 1.88 45.02 0.08 5.07 16 17 H 0.08 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.68 -17.07 4.36 -445.68 -1.94 -19.01 16 19 C 0.58 15.81 7.73 86.66 0.67 16.48 16 20 O -0.54 -18.14 12.81 -4.08 -0.05 -18.20 16 21 C 0.01 0.29 6.96 40.41 0.28 0.57 16 22 N -0.49 -7.44 11.06 -305.15 -3.37 -10.82 16 23 C 0.26 1.69 13.19 130.52 1.72 3.42 16 24 O -0.17 -2.15 10.72 0.44 0.00 -2.15 16 25 C -0.10 -1.91 6.75 25.19 0.17 -1.74 16 26 C 0.56 12.69 3.34 71.24 0.24 12.93 16 27 F -0.16 -3.75 17.30 44.97 0.78 -2.98 16 28 F -0.16 -3.34 17.30 44.97 0.78 -2.56 16 29 F -0.14 -3.93 13.49 44.97 0.61 -3.33 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.23 7.36 -2.39 -0.02 1.21 16 33 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 34 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.05 2.49 4.49 -2.39 -0.01 2.48 16 37 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 38 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.42 8.68 8.04 -92.71 -0.75 7.93 16 41 H 0.33 -2.52 8.06 -2.91 -0.02 -2.54 16 Total: -1.00 -74.85 346.48 3.21 -71.64 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.26 Total: 3.81 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 6.11 Total: 24.71 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.95 Total: -120.22 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 9 Polarization: -11.03 SS G_CDS: 2.16 Total: -8.87 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.67 Total: 49.27 kcal Total: -74.85 3.21 -71.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942200232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.247 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds