Wall clock time and date at job start Wed Apr 1 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.50196 * 2 1 4 4 C 1.53192 * 109.49753 * 239.93295 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38409 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48495 * 109.47071 * 90.00614 * 10 8 6 12 12 H 1.48505 * 109.47305 * 210.00539 * 10 8 6 13 13 H 1.48498 * 109.47243 * 330.00335 * 10 8 6 14 14 C 1.46922 * 118.74177 * 53.60504 * 5 4 2 15 15 C 1.53192 * 108.77791 * 306.39607 * 14 5 4 16 16 C 1.53038 * 109.52403 * 120.08025 * 2 1 3 17 17 H 1.08999 * 109.45847 * 301.34677 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.30987 * 16 2 1 19 19 C 1.34777 * 119.99940 * 204.99945 * 18 16 2 20 20 O 1.21615 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.47415 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.36099 * 126.45011 * 179.71428 * 21 19 18 23 23 O 1.34257 * 106.94813 * 179.84475 * 22 21 19 24 24 C 1.34045 * 108.22743 * 0.41838 * 23 22 21 25 25 C 1.50708 * 125.37638 * 179.69670 * 24 23 22 26 26 F 1.39909 * 109.46973 * 270.04686 * 25 24 23 27 27 F 1.39897 * 109.47202 * 30.04365 * 25 24 23 28 28 F 1.39899 * 109.46898 * 150.04917 * 25 24 23 29 29 N 1.29931 * 109.24327 * 359.73990 * 24 23 22 30 30 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47311 * 59.99832 * 1 2 3 33 33 H 1.09004 * 109.58631 * 305.16833 * 4 2 1 34 34 H 1.09002 * 109.58623 * 65.45004 * 4 2 1 35 35 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58242 * 66.18200 * 14 5 4 37 37 H 1.09004 * 109.59095 * 186.60115 * 14 5 4 38 38 H 1.08998 * 109.49760 * 174.58714 * 15 14 5 39 39 H 1.09003 * 109.49603 * 294.65072 * 15 14 5 40 40 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 41 41 H 1.07997 * 126.52150 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2930 -0.3780 -2.1953 7 1 3.9456 0.4216 -2.8327 8 6 5.5389 -0.9494 -2.4151 9 7 5.8283 -2.1200 -1.8876 10 14 6.8045 -0.0570 -3.4598 11 1 7.6343 0.8173 -2.5926 12 1 7.6749 -1.0502 -4.1390 13 1 6.1104 0.7713 -4.4783 14 6 4.1059 -1.4256 0.0299 15 6 3.5715 -0.6942 1.2654 16 6 2.0414 -0.7229 1.2481 17 1 1.6588 -0.2245 2.1388 18 7 1.5795 -2.1131 1.2306 19 6 1.4520 -2.7954 2.3859 20 8 1.7200 -2.2569 3.4429 21 6 0.9867 -4.1941 2.3684 22 6 0.8166 -5.0033 3.4494 23 8 0.3790 -6.1858 2.9881 24 6 0.2911 -6.1083 1.6528 25 6 -0.1552 -7.2228 0.7417 26 9 0.9549 -7.9813 0.3545 27 9 -1.0663 -8.0413 1.4177 28 9 -0.7681 -6.6805 -0.3929 29 7 0.6521 -4.9210 1.2679 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6056 -1.7215 -1.2981 34 1 1.7610 -0.1590 -2.1391 35 1 6.6990 -2.5191 -2.0409 36 1 3.8386 -2.4808 0.0859 37 1 5.1901 -1.3231 -0.0149 38 1 3.9346 -1.1888 2.1663 39 1 3.9165 0.3397 1.2537 40 1 1.3654 -2.5425 0.3876 41 1 0.9971 -4.7429 4.4818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942273965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:37 Heat of formation + Delta-G solvation = -133.740544 kcal Electronic energy + Delta-G solvation = -31504.932477 eV Core-core repulsion = 26586.763343 eV Total energy + Delta-G solvation = -4918.169135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.70465 -48.24314 -48.18449 -44.06895 -39.90981 -37.73005 -35.52461 -34.30653 -32.56660 -31.81937 -31.12055 -30.01998 -27.23692 -26.00944 -25.49705 -24.33667 -22.64090 -22.05461 -21.22220 -20.94767 -19.35442 -19.17950 -18.87922 -18.59491 -17.73481 -17.23186 -16.86657 -16.63240 -15.44846 -15.03310 -14.99536 -14.91683 -14.77424 -14.58181 -14.48540 -14.30217 -14.29176 -13.97761 -13.84884 -13.76930 -13.36865 -13.26052 -12.98863 -12.58358 -12.17015 -11.93888 -11.51479 -11.47660 -11.39139 -11.10730 -10.85274 -10.72368 -10.37457 -10.23457 -10.14579 -10.04964 -9.81811 -9.76310 -9.45790 -8.71142 -8.47120 -6.69645 -5.80004 -3.23029 0.48037 1.14162 1.33837 2.25167 2.82527 3.14009 3.22973 3.37440 3.44524 3.45443 3.66544 3.73048 4.19667 4.43168 4.48302 4.75138 5.02376 5.11147 5.29387 5.32937 5.35325 5.47729 5.57406 5.82907 5.95213 6.06192 6.12947 6.25460 6.30023 6.42293 6.56237 6.62719 6.65110 6.74686 6.88973 6.90415 7.34399 7.64915 7.68634 7.78522 8.24135 8.42652 9.19127 9.82412 10.38348 11.28066 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003302 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.345119 B = 8477.608852 C = 9548.501622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.150 3.850 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.173 3.827 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.077 0.923 18 N -0.686 5.686 19 C 0.599 3.401 20 O -0.540 6.540 21 C -0.060 4.060 22 C 0.050 3.950 23 O -0.169 6.169 24 C 0.091 3.909 25 C 0.588 3.412 26 F -0.151 7.151 27 F -0.158 7.158 28 F -0.140 7.140 29 N -0.384 5.384 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.058 0.942 35 H 0.254 0.746 36 H 0.018 0.982 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -7.928 9.825 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.023 3.977 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.095 0.905 18 N -0.336 5.336 19 C 0.383 3.617 20 O -0.418 6.418 21 C -0.182 4.182 22 C -0.024 4.024 23 O -0.053 6.053 24 C -0.119 4.119 25 C 0.532 3.468 26 F -0.132 7.132 27 F -0.139 7.139 28 F -0.121 7.121 29 N -0.116 5.116 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.692 -7.493 9.838 18.450 hybrid contribution 0.647 -0.230 -0.324 0.759 sum -13.045 -7.723 9.514 17.898 Atomic orbital electron populations 1.21775 0.95678 1.01440 1.01178 1.21957 0.94641 1.00785 0.96585 0.89750 1.20921 0.86128 0.96262 0.94356 1.44058 0.99128 1.71524 1.16584 1.19187 0.98228 1.12393 1.08619 0.91591 1.25030 0.99891 0.95314 0.99239 1.70043 1.21828 1.14567 1.48042 0.86296 0.81676 0.78909 0.79914 1.21460 1.21804 1.20428 1.20738 0.99361 0.92960 0.82221 1.22586 0.93853 1.02176 1.00856 1.21031 0.95391 0.79740 0.98344 0.90528 1.45989 1.64678 1.14297 1.08684 1.16542 0.77978 0.82330 0.84875 1.90821 1.51991 1.68387 1.30586 1.22180 1.09511 0.98319 0.88226 1.25724 0.94704 0.80471 1.01518 1.84389 1.63656 1.35583 1.21666 1.25448 1.09225 0.95997 0.81243 1.15959 0.75571 0.77867 0.77434 1.93343 1.52499 1.76192 1.91159 1.93294 1.67274 1.73443 1.79875 1.93338 1.82620 1.85659 1.50492 1.70708 1.09193 1.01067 1.30592 0.93032 0.93257 0.92595 0.96714 0.92365 0.93638 0.96384 0.89488 0.92633 0.91481 0.75141 0.73683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.06 37.15 0.34 -1.55 16 2 C -0.12 -1.92 2.67 -90.50 -0.24 -2.17 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.15 2.96 5.50 -3.71 -0.02 2.93 16 5 N -0.59 -14.24 2.99 -172.32 -0.52 -14.75 16 6 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 9 N -0.90 -25.95 11.19 55.49 0.62 -25.33 16 10 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 C 0.17 4.06 5.05 -3.71 -0.02 4.04 16 15 C -0.15 -2.99 5.77 -26.61 -0.15 -3.14 16 16 C 0.16 2.66 2.21 -67.89 -0.15 2.51 16 17 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 18 N -0.69 -11.16 3.59 -54.84 -0.20 -11.36 16 19 C 0.60 9.43 7.78 -12.52 -0.10 9.33 16 20 O -0.54 -9.34 16.55 5.26 0.09 -9.25 16 21 C -0.06 -0.81 6.99 -83.02 -0.58 -1.39 16 22 C 0.05 0.50 11.95 29.96 0.36 0.86 16 23 O -0.17 -1.74 10.70 6.52 0.07 -1.67 16 24 C 0.09 1.07 7.53 -13.08 -0.10 0.97 16 25 C 0.59 6.09 3.57 36.01 0.13 6.22 16 26 F -0.15 -1.64 17.30 2.25 0.04 -1.60 16 27 F -0.16 -1.44 17.28 2.25 0.04 -1.40 16 28 F -0.14 -1.55 17.23 2.25 0.04 -1.51 16 29 N -0.38 -5.36 10.96 -7.65 -0.08 -5.44 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.30 6.64 -51.93 -0.34 -0.05 16 34 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 37 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.41 6.87 6.46 -40.82 -0.26 6.61 16 41 H 0.25 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -30.51 356.17 -4.94 -35.45 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.61 Total: 3.35 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -0.77 Total: 11.67 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.18 Total: -56.89 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.16 Total: -10.93 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.12 Total: -4.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.51 -4.94 -35.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.295 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds