Wall clock time and date at job start Wed Apr 1 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.50196 * 2 1 4 4 C 1.53192 * 109.49753 * 239.93295 * 2 1 3 5 5 N 1.46922 * 108.77746 * 185.38409 * 4 2 1 6 6 C 1.36940 * 120.62906 * 233.58494 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.68622 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68003 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48495 * 109.47071 * 90.00614 * 10 8 6 12 12 H 1.48505 * 109.47305 * 210.00539 * 10 8 6 13 13 H 1.48498 * 109.47243 * 330.00335 * 10 8 6 14 14 C 1.46922 * 118.74177 * 53.60504 * 5 4 2 15 15 C 1.53192 * 108.77791 * 306.39607 * 14 5 4 16 16 C 1.53038 * 109.52403 * 120.08025 * 2 1 3 17 17 H 1.08999 * 109.45847 * 301.34677 * 16 2 1 18 18 N 1.46498 * 109.46113 * 61.30987 * 16 2 1 19 19 C 1.34777 * 119.99940 * 204.99945 * 18 16 2 20 20 O 1.21615 * 120.00106 * 0.02562 * 19 18 16 21 21 C 1.47415 * 119.99935 * 179.97438 * 19 18 16 22 22 C 1.36099 * 126.45011 * 179.71428 * 21 19 18 23 23 O 1.34257 * 106.94813 * 179.84475 * 22 21 19 24 24 C 1.34045 * 108.22743 * 0.41838 * 23 22 21 25 25 C 1.50708 * 125.37638 * 179.69670 * 24 23 22 26 26 F 1.39909 * 109.46973 * 270.04686 * 25 24 23 27 27 F 1.39897 * 109.47202 * 30.04365 * 25 24 23 28 28 F 1.39899 * 109.46898 * 150.04917 * 25 24 23 29 29 N 1.29931 * 109.24327 * 359.73990 * 24 23 22 30 30 H 1.08994 * 109.47366 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47319 * 300.00533 * 1 2 3 32 32 H 1.09002 * 109.47311 * 59.99832 * 1 2 3 33 33 H 1.09004 * 109.58631 * 305.16833 * 4 2 1 34 34 H 1.09002 * 109.58623 * 65.45004 * 4 2 1 35 35 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58242 * 66.18200 * 14 5 4 37 37 H 1.09004 * 109.59095 * 186.60115 * 14 5 4 38 38 H 1.08998 * 109.49760 * 174.58714 * 15 14 5 39 39 H 1.09003 * 109.49603 * 294.65072 * 15 14 5 40 40 H 0.97003 * 120.00029 * 25.00018 * 18 16 2 41 41 H 1.07997 * 126.52150 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5045 -0.8282 -1.1702 6 6 4.2930 -0.3780 -2.1953 7 1 3.9456 0.4216 -2.8327 8 6 5.5389 -0.9494 -2.4151 9 7 5.8283 -2.1200 -1.8876 10 14 6.8045 -0.0570 -3.4598 11 1 7.6343 0.8173 -2.5926 12 1 7.6749 -1.0502 -4.1390 13 1 6.1104 0.7713 -4.4783 14 6 4.1059 -1.4256 0.0299 15 6 3.5715 -0.6942 1.2654 16 6 2.0414 -0.7229 1.2481 17 1 1.6588 -0.2245 2.1388 18 7 1.5795 -2.1131 1.2306 19 6 1.4520 -2.7954 2.3859 20 8 1.7200 -2.2569 3.4429 21 6 0.9867 -4.1941 2.3684 22 6 0.8166 -5.0033 3.4494 23 8 0.3790 -6.1858 2.9881 24 6 0.2911 -6.1083 1.6528 25 6 -0.1552 -7.2228 0.7417 26 9 0.9549 -7.9813 0.3545 27 9 -1.0663 -8.0413 1.4177 28 9 -0.7681 -6.6805 -0.3929 29 7 0.6521 -4.9210 1.2679 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.6056 -1.7215 -1.2981 34 1 1.7610 -0.1590 -2.1391 35 1 6.6990 -2.5191 -2.0409 36 1 3.8386 -2.4808 0.0859 37 1 5.1901 -1.3231 -0.0149 38 1 3.9346 -1.1888 2.1663 39 1 3.9165 0.3397 1.2537 40 1 1.3654 -2.5425 0.3876 41 1 0.9971 -4.7429 4.4818 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942273965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:36 Heat of formation + Delta-G solvation = -154.819870 kcal Electronic energy + Delta-G solvation = -31505.846545 eV Core-core repulsion = 26586.763343 eV Total energy + Delta-G solvation = -4919.083203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.53839 -49.04897 -49.04496 -44.97466 -41.23640 -39.18514 -36.48936 -36.02364 -33.98791 -32.92253 -32.74163 -31.66593 -28.15285 -27.41529 -27.22993 -25.54499 -23.82361 -23.39162 -22.78967 -22.13106 -20.37190 -20.10077 -20.02245 -19.71491 -18.79694 -18.62764 -18.12725 -17.63180 -16.90618 -16.69043 -16.21289 -15.90603 -15.82094 -15.74314 -15.44880 -15.41234 -15.40264 -15.13967 -15.12440 -14.96963 -14.76312 -14.60673 -14.21867 -14.15601 -13.54776 -13.17567 -13.00609 -12.92414 -12.71190 -12.55478 -12.43778 -12.38779 -12.17693 -11.95819 -11.69464 -11.51052 -11.38778 -11.11320 -10.74320 -10.53726 -10.06330 -8.67647 -7.86894 -5.32200 -0.37965 0.28169 0.31552 1.39195 1.46883 1.48551 1.56860 1.90780 2.02429 2.10296 2.51334 2.84764 2.89009 3.20069 3.28077 3.42345 3.66660 3.77447 3.87007 4.05408 4.11413 4.23964 4.35232 4.41203 4.59065 4.66167 4.76512 4.79145 4.96215 5.00920 5.08505 5.15344 5.29644 5.41566 5.45453 5.53311 5.64541 5.73122 5.76911 6.38320 6.41778 6.98883 7.14577 7.85943 8.37191 9.18971 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.003302 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.345119 B = 8477.608852 C = 9548.501622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.261 4.261 7 H 0.070 0.930 8 C -0.049 4.049 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.287 1.287 12 H -0.298 1.298 13 H -0.267 1.267 14 C 0.186 3.814 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.091 0.909 18 N -0.691 5.691 19 C 0.602 3.398 20 O -0.558 6.558 21 C -0.098 4.098 22 C 0.090 3.910 23 O -0.160 6.160 24 C 0.089 3.911 25 C 0.596 3.404 26 F -0.154 7.154 27 F -0.147 7.147 28 F -0.145 7.145 29 N -0.411 5.411 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.014 0.986 34 H 0.059 0.941 35 H 0.248 0.752 36 H -0.006 1.006 37 H 0.048 0.952 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.408 0.592 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.607 -7.481 10.851 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.391 4.391 7 H 0.088 0.912 8 C -0.245 4.245 9 N -0.581 5.581 10 Si 0.793 3.207 11 H -0.214 1.214 12 H -0.225 1.225 13 H -0.191 1.191 14 C 0.061 3.939 15 C -0.183 4.183 16 C 0.061 3.939 17 H 0.109 0.891 18 N -0.340 5.340 19 C 0.387 3.613 20 O -0.437 6.437 21 C -0.220 4.220 22 C 0.016 3.984 23 O -0.043 6.043 24 C -0.122 4.122 25 C 0.540 3.460 26 F -0.135 7.135 27 F -0.128 7.128 28 F -0.126 7.126 29 N -0.143 5.143 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.012 0.988 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -15.301 -7.035 10.862 20.040 hybrid contribution 1.092 -0.425 -0.608 1.320 sum -14.209 -7.460 10.254 19.045 Atomic orbital electron populations 1.21696 0.92839 1.01921 1.02683 1.21805 0.96818 0.99941 0.94105 0.89659 1.21074 0.83587 0.96680 0.96399 1.44279 1.00958 1.71477 1.16261 1.19543 0.98751 1.12072 1.08756 0.91227 1.25760 1.01747 0.95981 1.00986 1.70202 1.21817 1.16118 1.49948 0.85304 0.79201 0.77611 0.78561 1.21385 1.22482 1.19118 1.20418 0.97200 0.92247 0.84080 1.22401 0.96071 1.01402 0.98380 1.20929 0.93222 0.80529 0.99218 0.89142 1.45969 1.64987 1.14150 1.08907 1.16750 0.77192 0.83094 0.84263 1.90800 1.52880 1.69144 1.30905 1.21975 1.12629 0.97921 0.89450 1.26464 0.90787 0.79086 1.02110 1.84440 1.63307 1.35594 1.20949 1.25566 1.09000 0.95712 0.81876 1.15794 0.75521 0.77610 0.77121 1.93337 1.52806 1.76216 1.91186 1.93315 1.66851 1.73049 1.79620 1.93328 1.82680 1.85778 1.50798 1.70620 1.10036 1.02075 1.31523 0.93070 0.91521 0.91335 0.96863 0.92251 0.94311 0.98788 0.93324 0.92792 0.91314 0.75532 0.69737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.06 71.98 0.65 -2.52 16 2 C -0.11 -3.27 2.67 -10.72 -0.03 -3.30 16 3 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.15 5.77 5.50 86.36 0.47 6.24 16 5 N -0.61 -29.67 2.99 -699.10 -2.09 -31.76 16 6 C -0.26 -14.14 9.59 84.03 0.81 -13.34 16 7 H 0.07 3.65 7.89 -2.91 -0.02 3.63 16 8 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 9 N -0.93 -55.70 11.19 21.65 0.24 -55.46 16 10 Si 0.96 44.91 29.59 68.60 2.03 46.94 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 C 0.19 9.04 5.05 86.36 0.44 9.48 16 15 C -0.14 -5.52 5.77 30.67 0.18 -5.35 16 16 C 0.17 5.35 2.21 45.02 0.10 5.45 16 17 H 0.09 2.76 7.58 -2.39 -0.02 2.75 16 18 N -0.69 -22.08 3.59 -445.68 -1.60 -23.68 16 19 C 0.60 18.34 7.78 86.66 0.67 19.02 16 20 O -0.56 -18.46 16.55 -4.08 -0.07 -18.52 16 21 C -0.10 -2.52 6.99 40.41 0.28 -2.24 16 22 C 0.09 1.55 11.95 67.32 0.80 2.35 16 23 O -0.16 -2.92 10.70 0.42 0.00 -2.91 16 24 C 0.09 1.99 7.53 88.39 0.67 2.65 16 25 C 0.60 11.76 3.57 71.24 0.25 12.01 16 26 F -0.15 -3.26 17.30 44.97 0.78 -2.48 16 27 F -0.15 -2.47 17.28 44.97 0.78 -1.69 16 28 F -0.14 -3.11 17.23 44.97 0.78 -2.34 16 29 N -0.41 -11.21 10.96 -293.04 -3.21 -14.42 16 30 H 0.05 1.23 7.54 -2.39 -0.02 1.21 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.01 0.53 6.64 -2.39 -0.02 0.52 16 34 H 0.06 2.27 7.94 -2.39 -0.02 2.25 16 35 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 36 H -0.01 -0.31 7.74 -2.39 -0.02 -0.33 16 37 H 0.05 2.72 6.04 -2.38 -0.01 2.71 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.41 13.64 6.46 -92.71 -0.60 13.05 16 41 H 0.29 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.16 356.17 3.85 -63.32 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.50 Total: 14.88 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 5.71 Total: 28.13 kcal Atomic # 7 Polarization: -118.66 SS G_CDS: -6.67 Total: -125.32 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.44 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 2.33 Total: -6.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.16 3.85 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.504 kcal (2) G-P(sol) polarization free energy of solvation -67.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds