Wall clock time and date at job start Wed Apr 1 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.49864 * 2 1 4 4 C 1.53188 * 109.49622 * 120.09256 * 2 1 3 5 5 N 1.46933 * 108.77501 * 174.58767 * 4 2 1 6 6 C 1.36933 * 120.63051 * 126.37076 * 5 4 2 7 7 H 1.08001 * 120.00209 * 331.83127 * 6 5 4 8 8 C 1.38816 * 119.99960 * 151.83518 * 6 5 4 9 9 N 1.31619 * 119.99728 * 343.07604 * 8 6 5 10 10 Si 1.86802 * 119.99986 * 163.08096 * 8 6 5 11 11 H 1.48503 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46882 * 120.00050 * 10 8 6 13 13 H 1.48500 * 109.46765 * 239.99952 * 10 8 6 14 14 C 1.46925 * 118.73798 * 306.39020 * 5 4 2 15 15 C 1.53167 * 108.76868 * 53.61056 * 14 5 4 16 16 C 1.53037 * 109.49750 * 239.93389 * 2 1 3 17 17 H 1.09001 * 109.46557 * 58.67840 * 16 2 1 18 18 N 1.46507 * 109.45921 * 298.70005 * 16 2 1 19 19 C 1.34775 * 119.99529 * 154.97483 * 18 16 2 20 20 O 1.21609 * 120.00743 * 359.97438 * 19 18 16 21 21 C 1.47419 * 119.99619 * 180.02562 * 19 18 16 22 22 C 1.36092 * 126.45153 * 179.97438 * 21 19 18 23 23 O 1.34261 * 106.95139 * 179.78281 * 22 21 19 24 24 C 1.34051 * 108.22598 * 0.38504 * 23 22 21 25 25 C 1.50696 * 125.37639 * 179.86828 * 24 23 22 26 26 F 1.39898 * 109.47460 * 269.69434 * 25 24 23 27 27 F 1.39899 * 109.46743 * 149.69159 * 25 24 23 28 28 F 1.39909 * 109.47069 * 29.69614 * 25 24 23 29 29 N 1.29931 * 109.24067 * 359.60336 * 24 23 22 30 30 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47403 * 300.06789 * 1 2 3 32 32 H 1.08996 * 109.47113 * 60.06820 * 1 2 3 33 33 H 1.08995 * 109.59033 * 294.37304 * 4 2 1 34 34 H 1.09001 * 109.58989 * 54.80079 * 4 2 1 35 35 H 0.96996 * 119.99792 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.58543 * 173.39248 * 14 5 4 37 37 H 1.08997 * 109.59298 * 293.82523 * 14 5 4 38 38 H 1.08992 * 109.48072 * 185.40398 * 15 14 5 39 39 H 1.09007 * 109.50025 * 65.31352 * 15 14 5 40 40 H 0.96999 * 120.00106 * 334.97840 * 18 16 2 41 41 H 1.08002 * 126.52285 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7240 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2935 -0.3789 2.1940 7 1 3.9499 0.4264 2.8263 8 6 5.5350 -0.9575 2.4200 9 7 5.8211 -2.1287 1.8921 10 14 6.7994 -0.0737 3.4733 11 1 6.2360 1.2170 3.9446 12 1 7.1470 -0.9194 4.6435 13 1 8.0206 0.1842 2.6687 14 6 4.1053 -1.4267 -0.0310 15 6 3.5709 -0.6947 -1.2658 16 6 2.0407 -0.7227 -1.2485 17 1 1.6583 -0.2238 -2.1390 18 7 1.5783 -2.1128 -1.2313 19 6 1.4497 -2.7945 -2.3868 20 8 1.7170 -2.2558 -3.4437 21 6 0.9839 -4.1931 -2.3695 22 6 0.8070 -4.9998 -3.4511 23 8 0.3794 -6.1858 -2.9891 24 6 0.2873 -6.1072 -1.6541 25 6 -0.1595 -7.2215 -0.7433 26 9 -1.5455 -7.1518 -0.5662 27 9 0.4761 -7.0936 0.4964 28 9 0.1763 -8.4537 -1.3146 29 7 0.6493 -4.9202 -1.2691 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.7637 -0.1584 2.1388 34 1 1.6052 -1.7219 1.2977 35 1 6.6884 -2.5331 2.0503 36 1 5.1895 -1.3245 0.0135 37 1 3.8375 -2.4818 -0.0873 38 1 3.9336 -1.1892 -2.1668 39 1 3.9159 0.3392 -1.2536 40 1 1.3646 -2.5425 -0.3883 41 1 0.9814 -4.7374 -4.4841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942273966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:43 Heat of formation + Delta-G solvation = -133.819517 kcal Electronic energy + Delta-G solvation = -31506.749478 eV Core-core repulsion = 26588.576919 eV Total energy + Delta-G solvation = -4918.172559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.70351 -48.24498 -48.17897 -44.06729 -39.91017 -37.73050 -35.52359 -34.30497 -32.56575 -31.81928 -31.12395 -30.01855 -27.23631 -26.00995 -25.49630 -24.33581 -22.63918 -22.05385 -21.22201 -20.94660 -19.35382 -19.19074 -18.86368 -18.59457 -17.73470 -17.23187 -16.86618 -16.63188 -15.44625 -15.04260 -14.97938 -14.92229 -14.77486 -14.58423 -14.48502 -14.29657 -14.28775 -13.98012 -13.84540 -13.76558 -13.36827 -13.25929 -12.98887 -12.58895 -12.16885 -11.93952 -11.51371 -11.47650 -11.38737 -11.11079 -10.85727 -10.72275 -10.36661 -10.23307 -10.14759 -10.05080 -9.81869 -9.76424 -9.45351 -8.71095 -8.47713 -6.68669 -5.80157 -3.23509 0.48050 1.14329 1.33832 2.25228 2.82697 3.14202 3.22871 3.36412 3.44574 3.46429 3.66845 3.72865 4.19758 4.43196 4.48189 4.75125 5.02393 5.11229 5.29722 5.32913 5.35277 5.47756 5.57456 5.82893 5.95209 6.06177 6.12978 6.25578 6.30050 6.42303 6.56255 6.62804 6.65187 6.74696 6.89008 6.90517 7.34390 7.64989 7.68659 7.78731 8.24142 8.42904 9.19186 9.82360 10.38583 11.28022 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.003305 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.924039 B = 8470.771142 C = 9547.545616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.084 0.916 4 C 0.150 3.850 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.173 3.827 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.077 0.923 18 N -0.686 5.686 19 C 0.599 3.401 20 O -0.540 6.540 21 C -0.060 4.060 22 C 0.050 3.950 23 O -0.170 6.170 24 C 0.091 3.909 25 C 0.587 3.413 26 F -0.154 7.154 27 F -0.138 7.138 28 F -0.157 7.157 29 N -0.384 5.384 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.015 0.985 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.018 0.982 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 -7.887 -9.834 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.023 3.977 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.195 4.195 16 C 0.055 3.945 17 H 0.095 0.905 18 N -0.337 5.337 19 C 0.383 3.617 20 O -0.418 6.418 21 C -0.182 4.182 22 C -0.024 4.024 23 O -0.053 6.053 24 C -0.119 4.119 25 C 0.531 3.469 26 F -0.135 7.135 27 F -0.118 7.118 28 F -0.138 7.138 29 N -0.116 5.116 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -13.646 -7.445 -9.853 18.405 hybrid contribution 0.641 -0.253 0.330 0.764 sum -13.005 -7.698 -9.523 17.863 Atomic orbital electron populations 1.21775 0.95688 1.01432 1.01177 1.21958 0.94638 1.00783 0.96587 0.89750 1.20929 0.86150 0.96247 0.94356 1.44062 0.99127 1.71536 1.16583 1.19210 0.98488 1.11943 1.08719 0.91603 1.25045 0.99941 0.95309 0.99176 1.70045 1.22055 1.14489 1.47893 0.86246 0.81702 0.79212 0.79739 1.20232 1.21740 1.21589 1.20725 0.99317 0.92976 0.82233 1.22583 0.93857 1.02171 1.00857 1.21035 0.95388 0.79745 0.98343 0.90522 1.45990 1.64670 1.14315 1.08675 1.16540 0.77983 0.82323 0.84876 1.90820 1.52012 1.68362 1.30590 1.22182 1.09502 0.98358 0.88194 1.25724 0.94806 0.80389 1.01503 1.84392 1.63951 1.35264 1.21693 1.25448 1.09145 0.96033 0.81282 1.15964 0.75532 0.77733 0.77636 1.93315 1.28879 1.96015 1.95300 1.93365 1.81582 1.95492 1.41411 1.93302 1.92109 1.43844 1.84539 1.70709 1.09152 1.01110 1.30589 0.93043 0.92595 0.93259 0.92360 0.96692 0.93690 0.89546 0.96364 0.92638 0.91481 0.75139 0.73685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.05 37.15 0.34 -1.55 16 2 C -0.12 -1.92 2.67 -90.51 -0.24 -2.16 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 4 C 0.15 2.95 5.50 -3.71 -0.02 2.93 16 5 N -0.59 -14.24 2.99 -172.34 -0.52 -14.75 16 6 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -25.97 11.20 55.49 0.62 -25.35 16 10 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 C 0.17 4.07 5.05 -3.72 -0.02 4.05 16 15 C -0.15 -2.99 5.77 -26.62 -0.15 -3.14 16 16 C 0.16 2.66 2.21 -67.88 -0.15 2.51 16 17 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 18 N -0.69 -11.16 3.59 -54.84 -0.20 -11.36 16 19 C 0.60 9.43 7.78 -12.52 -0.10 9.33 16 20 O -0.54 -9.34 16.55 5.27 0.09 -9.25 16 21 C -0.06 -0.81 6.99 -83.02 -0.58 -1.39 16 22 C 0.05 0.50 11.95 29.96 0.36 0.86 16 23 O -0.17 -1.75 10.70 6.50 0.07 -1.68 16 24 C 0.09 1.07 7.53 -13.08 -0.10 0.97 16 25 C 0.59 6.09 3.57 36.00 0.13 6.22 16 26 F -0.15 -1.51 17.30 2.25 0.04 -1.47 16 27 F -0.14 -1.62 17.23 2.25 0.04 -1.58 16 28 F -0.16 -1.50 17.28 2.25 0.04 -1.46 16 29 N -0.38 -5.36 10.96 -7.66 -0.08 -5.45 16 30 H 0.05 0.68 7.53 -51.93 -0.39 0.28 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 34 H 0.02 0.30 6.64 -51.93 -0.34 -0.04 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 37 H 0.02 0.46 7.74 -51.93 -0.40 0.05 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.41 6.87 6.46 -40.82 -0.26 6.61 16 41 H 0.25 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -30.55 356.19 -4.94 -35.49 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.61 Total: 3.33 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -0.77 Total: 11.69 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.18 Total: -56.90 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.16 Total: -10.93 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.12 Total: -4.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.55 -4.94 -35.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.333 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds