Wall clock time and date at job start Wed Apr 1 2020 06:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.49864 * 2 1 4 4 C 1.53188 * 109.49622 * 120.09256 * 2 1 3 5 5 N 1.46933 * 108.77501 * 174.58767 * 4 2 1 6 6 C 1.36933 * 120.63051 * 126.37076 * 5 4 2 7 7 H 1.08001 * 120.00209 * 331.83127 * 6 5 4 8 8 C 1.38816 * 119.99960 * 151.83518 * 6 5 4 9 9 N 1.31619 * 119.99728 * 343.07604 * 8 6 5 10 10 Si 1.86802 * 119.99986 * 163.08096 * 8 6 5 11 11 H 1.48503 * 109.47167 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46882 * 120.00050 * 10 8 6 13 13 H 1.48500 * 109.46765 * 239.99952 * 10 8 6 14 14 C 1.46925 * 118.73798 * 306.39020 * 5 4 2 15 15 C 1.53167 * 108.76868 * 53.61056 * 14 5 4 16 16 C 1.53037 * 109.49750 * 239.93389 * 2 1 3 17 17 H 1.09001 * 109.46557 * 58.67840 * 16 2 1 18 18 N 1.46507 * 109.45921 * 298.70005 * 16 2 1 19 19 C 1.34775 * 119.99529 * 154.97483 * 18 16 2 20 20 O 1.21609 * 120.00743 * 359.97438 * 19 18 16 21 21 C 1.47419 * 119.99619 * 180.02562 * 19 18 16 22 22 C 1.36092 * 126.45153 * 179.97438 * 21 19 18 23 23 O 1.34261 * 106.95139 * 179.78281 * 22 21 19 24 24 C 1.34051 * 108.22598 * 0.38504 * 23 22 21 25 25 C 1.50696 * 125.37639 * 179.86828 * 24 23 22 26 26 F 1.39898 * 109.47460 * 269.69434 * 25 24 23 27 27 F 1.39899 * 109.46743 * 149.69159 * 25 24 23 28 28 F 1.39909 * 109.47069 * 29.69614 * 25 24 23 29 29 N 1.29931 * 109.24067 * 359.60336 * 24 23 22 30 30 H 1.08998 * 109.47341 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47403 * 300.06789 * 1 2 3 32 32 H 1.08996 * 109.47113 * 60.06820 * 1 2 3 33 33 H 1.08995 * 109.59033 * 294.37304 * 4 2 1 34 34 H 1.09001 * 109.58989 * 54.80079 * 4 2 1 35 35 H 0.96996 * 119.99792 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.58543 * 173.39248 * 14 5 4 37 37 H 1.08997 * 109.59298 * 293.82523 * 14 5 4 38 38 H 1.08992 * 109.48072 * 185.40398 * 15 14 5 39 39 H 1.09007 * 109.50025 * 65.31352 * 15 14 5 40 40 H 0.96999 * 120.00106 * 334.97840 * 18 16 2 41 41 H 1.08002 * 126.52285 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7240 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2935 -0.3789 2.1940 7 1 3.9499 0.4264 2.8263 8 6 5.5350 -0.9575 2.4200 9 7 5.8211 -2.1287 1.8921 10 14 6.7994 -0.0737 3.4733 11 1 6.2360 1.2170 3.9446 12 1 7.1470 -0.9194 4.6435 13 1 8.0206 0.1842 2.6687 14 6 4.1053 -1.4267 -0.0310 15 6 3.5709 -0.6947 -1.2658 16 6 2.0407 -0.7227 -1.2485 17 1 1.6583 -0.2238 -2.1390 18 7 1.5783 -2.1128 -1.2313 19 6 1.4497 -2.7945 -2.3868 20 8 1.7170 -2.2558 -3.4437 21 6 0.9839 -4.1931 -2.3695 22 6 0.8070 -4.9998 -3.4511 23 8 0.3794 -6.1858 -2.9891 24 6 0.2873 -6.1072 -1.6541 25 6 -0.1595 -7.2215 -0.7433 26 9 -1.5455 -7.1518 -0.5662 27 9 0.4761 -7.0936 0.4964 28 9 0.1763 -8.4537 -1.3146 29 7 0.6493 -4.9202 -1.2691 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.7637 -0.1584 2.1388 34 1 1.6052 -1.7219 1.2977 35 1 6.6884 -2.5331 2.0503 36 1 5.1895 -1.3245 0.0135 37 1 3.8375 -2.4818 -0.0873 38 1 3.9336 -1.1892 -2.1668 39 1 3.9159 0.3392 -1.2536 40 1 1.3646 -2.5425 -0.3883 41 1 0.9814 -4.7374 -4.4841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942273966.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:42 Heat of formation + Delta-G solvation = -154.943865 kcal Electronic energy + Delta-G solvation = -31507.665499 eV Core-core repulsion = 26588.576919 eV Total energy + Delta-G solvation = -4919.088580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.53927 -49.05241 -49.04255 -44.97330 -41.23640 -39.18540 -36.48853 -36.02224 -33.98693 -32.92534 -32.74238 -31.66488 -28.15302 -27.41619 -27.22956 -25.54407 -23.82295 -23.39095 -22.78853 -22.13069 -20.37177 -20.10095 -20.02581 -19.70983 -18.79724 -18.62778 -18.12737 -17.63096 -16.90498 -16.68935 -16.21399 -15.90650 -15.81954 -15.74641 -15.44610 -15.41365 -15.40367 -15.13647 -15.12792 -14.96674 -14.76288 -14.60685 -14.22361 -14.15661 -13.54751 -13.17317 -13.00226 -12.92602 -12.72713 -12.55625 -12.43493 -12.39113 -12.15632 -11.95969 -11.69570 -11.50789 -11.38692 -11.11068 -10.74326 -10.54701 -10.06258 -8.66785 -7.87056 -5.32736 -0.37925 0.28122 0.31667 1.39148 1.45762 1.48215 1.58232 1.90736 2.02571 2.10235 2.51195 2.84340 2.89524 3.20077 3.28392 3.42364 3.66737 3.77507 3.87002 4.05454 4.11454 4.23979 4.35265 4.41278 4.59149 4.66271 4.76560 4.79341 4.96287 5.01078 5.08484 5.15319 5.29718 5.41618 5.45459 5.53240 5.64817 5.73123 5.76932 6.38669 6.41827 6.98907 7.14700 7.85867 8.37383 9.19071 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011640 B = 0.003305 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.924039 B = 8470.771142 C = 9547.545616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.085 0.915 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.070 0.930 8 C -0.049 4.049 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.264 1.264 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.187 3.813 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.091 0.909 18 N -0.691 5.691 19 C 0.602 3.398 20 O -0.558 6.558 21 C -0.098 4.098 22 C 0.090 3.910 23 O -0.160 6.160 24 C 0.089 3.911 25 C 0.596 3.404 26 F -0.149 7.149 27 F -0.148 7.148 28 F -0.150 7.150 29 N -0.411 5.411 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.014 0.986 35 H 0.248 0.752 36 H 0.048 0.952 37 H -0.006 1.006 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.408 0.592 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 -7.434 -10.889 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.087 0.913 8 C -0.245 4.245 9 N -0.581 5.581 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.221 1.221 13 H -0.220 1.220 14 C 0.061 3.939 15 C -0.183 4.183 16 C 0.061 3.939 17 H 0.109 0.891 18 N -0.340 5.340 19 C 0.387 3.613 20 O -0.437 6.437 21 C -0.220 4.220 22 C 0.016 3.984 23 O -0.043 6.043 24 C -0.122 4.122 25 C 0.540 3.460 26 F -0.130 7.130 27 F -0.129 7.129 28 F -0.131 7.131 29 N -0.143 5.143 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.245 0.755 41 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges -15.260 -6.980 -10.908 20.014 hybrid contribution 1.086 -0.451 0.624 1.331 sum -14.174 -7.431 -10.284 19.023 Atomic orbital electron populations 1.21696 0.92849 1.01915 1.02680 1.21804 0.96816 0.99939 0.94105 0.89655 1.21081 0.83605 0.96663 0.96399 1.44283 1.00958 1.71487 1.16265 1.19561 0.98996 1.11626 1.08831 0.91257 1.25774 1.01810 0.95968 1.00932 1.70202 1.22102 1.16039 1.49798 0.85254 0.79129 0.78478 0.77871 1.18834 1.22123 1.21960 1.20404 0.97146 0.92261 0.84094 1.22399 0.96070 1.01409 0.98375 1.20935 0.93223 0.80531 0.99217 0.89129 1.45970 1.64980 1.14170 1.08897 1.16748 0.77199 0.83085 0.84264 1.90799 1.52900 1.69118 1.30907 1.21978 1.12623 0.97963 0.89418 1.26464 0.90865 0.79015 1.02100 1.84443 1.63599 1.35282 1.20972 1.25564 1.08927 0.95750 0.81914 1.15793 0.75573 0.77633 0.77047 1.93325 1.28423 1.95997 1.95233 1.93344 1.81864 1.95562 1.42137 1.93317 1.92088 1.43310 1.84367 1.70622 1.09996 1.02119 1.31517 0.93079 0.91336 0.91523 0.92255 0.96848 0.94309 0.93395 0.98782 0.92797 0.91289 0.75534 0.69734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 9.05 71.98 0.65 -2.52 16 2 C -0.11 -3.27 2.67 -10.72 -0.03 -3.29 16 3 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 4 C 0.15 5.77 5.50 86.36 0.48 6.24 16 5 N -0.61 -29.68 2.99 -699.15 -2.09 -31.77 16 6 C -0.26 -14.08 9.58 84.04 0.81 -13.28 16 7 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 8 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 9 N -0.94 -55.77 11.20 21.65 0.24 -55.53 16 10 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 14 C 0.19 9.06 5.05 86.35 0.44 9.49 16 15 C -0.14 -5.52 5.77 30.67 0.18 -5.34 16 16 C 0.16 5.35 2.21 45.02 0.10 5.45 16 17 H 0.09 2.77 7.58 -2.39 -0.02 2.75 16 18 N -0.69 -22.08 3.59 -445.66 -1.60 -23.68 16 19 C 0.60 18.34 7.78 86.66 0.67 19.01 16 20 O -0.56 -18.45 16.55 -4.06 -0.07 -18.51 16 21 C -0.10 -2.52 6.99 40.41 0.28 -2.24 16 22 C 0.09 1.55 11.95 67.32 0.80 2.35 16 23 O -0.16 -2.92 10.70 0.33 0.00 -2.92 16 24 C 0.09 1.99 7.53 88.39 0.67 2.66 16 25 C 0.60 11.77 3.57 71.23 0.25 12.02 16 26 F -0.15 -2.74 17.30 44.97 0.78 -1.96 16 27 F -0.15 -3.46 17.23 44.97 0.77 -2.68 16 28 F -0.15 -2.67 17.28 44.97 0.78 -1.89 16 29 N -0.41 -11.22 10.96 -293.04 -3.21 -14.43 16 30 H 0.05 1.23 7.53 -2.39 -0.02 1.21 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 34 H 0.01 0.54 6.64 -2.39 -0.02 0.52 16 35 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 37 H -0.01 -0.31 7.74 -2.39 -0.02 -0.33 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.41 13.65 6.46 -92.71 -0.60 13.05 16 41 H 0.29 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -67.29 356.19 3.85 -63.44 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.50 Total: 14.80 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: 5.71 Total: 28.21 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -6.66 Total: -125.41 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 2.33 Total: -6.53 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.29 3.85 -63.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273966.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.507 kcal (2) G-P(sol) polarization free energy of solvation -67.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds