Wall clock time and date at job start Wed Apr 1 2020 06:26:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09006 * 109.52519 * 2 1
4 4 C 1.53194 * 109.49737 * 120.07791 * 2 1 3
5 5 N 1.46929 * 108.77338 * 174.58832 * 4 2 1
6 6 C 1.36938 * 120.63009 * 126.37152 * 5 4 2
7 7 H 1.07996 * 120.00094 * 332.58562 * 6 5 4
8 8 C 1.38813 * 119.99821 * 152.58705 * 6 5 4
9 9 N 1.31611 * 120.00201 * 342.49359 * 8 6 5
10 10 Si 1.86804 * 119.99923 * 162.76680 * 8 6 5
11 11 H 1.48497 * 109.46990 * 359.97438 * 10 8 6
12 12 H 1.48493 * 109.47259 * 119.99842 * 10 8 6
13 13 H 1.48499 * 109.47133 * 240.00312 * 10 8 6
14 14 C 1.46929 * 118.73866 * 306.64350 * 5 4 2
15 15 C 1.52760 * 109.00960 * 53.30862 * 14 5 4
16 16 C 1.53039 * 109.49629 * 239.91598 * 2 1 3
17 17 H 1.08994 * 109.46088 * 298.69709 * 16 2 1
18 18 N 1.46494 * 109.46176 * 58.66545 * 16 2 1
19 19 C 1.34770 * 120.00365 * 205.00294 * 18 16 2
20 20 O 1.21615 * 119.99622 * 359.97438 * 19 18 16
21 21 C 1.47419 * 120.00625 * 179.97438 * 19 18 16
22 22 C 1.36090 * 126.45507 * 179.97438 * 21 19 18
23 23 O 1.34254 * 106.95196 * 179.97438 * 22 21 19
24 24 C 1.34051 * 108.22660 * 359.97438 * 23 22 21
25 25 C 1.50703 * 125.37723 * 180.02562 * 24 23 22
26 26 F 1.39894 * 109.47143 * 269.97871 * 25 24 23
27 27 F 1.39905 * 109.46815 * 29.97711 * 25 24 23
28 28 F 1.39894 * 109.46990 * 149.97165 * 25 24 23
29 29 N 1.29931 * 109.24239 * 359.74587 * 24 23 22
30 30 H 1.09005 * 109.47218 * 299.92072 * 1 2 3
31 31 H 1.08993 * 109.47324 * 59.91977 * 1 2 3
32 32 H 1.09004 * 109.47251 * 179.97438 * 1 2 3
33 33 H 1.08997 * 109.58900 * 54.80367 * 4 2 1
34 34 H 1.08997 * 109.70721 * 294.44191 * 4 2 1
35 35 H 0.97008 * 119.99943 * 179.97438 * 9 8 6
36 36 H 1.08999 * 109.58872 * 173.15048 * 14 5 4
37 37 H 1.09003 * 109.58399 * 293.56745 * 14 5 4
38 38 H 1.08994 * 109.56594 * 185.55179 * 15 14 5
39 39 H 1.09001 * 109.38476 * 65.51623 * 15 14 5
40 40 H 0.97010 * 119.99892 * 24.99271 * 18 16 2
41 41 H 1.08003 * 126.51792 * 0.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8943 1.0274 0.0000
4 6 2.0413 -0.7237 1.2496
5 7 3.5046 -0.8290 1.1696
6 6 4.2936 -0.3783 2.1941
7 1 3.9448 0.4189 2.8338
8 6 5.5416 -0.9462 2.4104
9 7 5.8329 -2.1159 1.8822
10 14 6.8051 -0.0536 3.4576
11 1 6.2333 1.2307 3.9357
12 1 7.1679 -0.8989 4.6233
13 1 8.0186 0.2172 2.6456
14 6 4.1055 -1.4215 -0.0332
15 6 3.5708 -0.6950 -1.2660
16 6 2.0407 -0.7232 -1.2483
17 1 1.6967 -1.7573 -1.2351
18 7 1.5265 -0.0531 -2.4452
19 6 1.3984 -0.7384 -3.5986
20 8 1.7101 -1.9129 -3.6458
21 6 0.8804 -0.0643 -4.8030
22 6 0.6986 -0.6262 -6.0291
23 8 0.2115 0.3338 -6.8313
24 6 0.0958 1.4606 -6.1144
25 6 -0.4145 2.7788 -6.6370
26 9 0.6560 3.5282 -7.1365
27 9 -1.3399 2.5478 -7.6605
28 9 -1.0334 3.4837 -5.5992
29 7 0.4875 1.2351 -4.8962
30 1 -0.3634 0.5126 0.8907
31 1 -0.3633 0.5150 -0.8892
32 1 -0.3634 -1.0277 -0.0005
33 1 1.6053 -1.7216 1.2981
34 1 1.7637 -0.1600 2.1403
35 1 6.7052 -2.5126 2.0331
36 1 5.1895 -1.3159 0.0100
37 1 3.8413 -2.4774 -0.0914
38 1 3.9334 -1.1897 -2.1670
39 1 3.9159 0.3389 -1.2547
40 1 1.2781 0.8839 -2.4076
41 1 0.9060 -1.6498 -6.3041
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000942273968.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:26:54
Heat of formation + Delta-G solvation = -136.327266 kcal
Electronic energy + Delta-G solvation = -30705.773860 eV
Core-core repulsion = 25787.492556 eV
Total energy + Delta-G solvation = -4918.281303 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 347.124 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-50.88983 -48.41789 -48.38228 -44.23528 -39.87202 -37.73961 -35.69100 -34.61572
-32.70615 -31.97314 -31.21650 -29.88589 -27.40567 -26.02887 -25.61142 -24.15112
-22.79182 -22.13137 -21.05106 -20.76896 -19.83022 -19.36750 -19.14118 -18.91272
-17.75422 -17.39437 -16.93091 -16.60816 -16.00051 -15.20289 -15.17145 -14.92401
-14.76759 -14.74907 -14.53458 -14.48927 -14.47980 -14.12648 -13.86282 -13.60000
-13.49133 -13.29402 -12.84512 -12.68640 -12.22936 -12.05835 -11.69068 -11.50956
-11.33349 -11.10645 -10.86985 -10.67619 -10.42003 -10.25804 -10.23488 -10.02150
-9.96691 -9.81314 -9.55200 -8.79873 -8.45075 -6.71044 -5.80095 -3.22485
0.32370 0.96772 1.16349 2.08511 2.64207 3.01853 3.05869 3.36874
3.44922 3.46866 3.48999 3.54501 4.03382 4.27682 4.48227 4.59235
4.88689 5.05685 5.19014 5.28649 5.38890 5.48895 5.56373 5.85034
5.95505 6.07344 6.22121 6.23049 6.28668 6.42235 6.48255 6.56264
6.64443 6.74682 6.84258 6.93605 7.34209 7.53450 7.65585 7.78875
8.11517 8.42921 9.19256 9.82696 10.38706 11.28557
Molecular weight = 347.12amu
Principal moments of inertia in cm(-1)
A = 0.018804 B = 0.002330 C = 0.002293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1488.689183 B =12012.622570 C =12210.652544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.115 4.115
3 H 0.073 0.927
4 C 0.156 3.844
5 N -0.593 5.593
6 C -0.254 4.254
7 H 0.067 0.933
8 C 0.003 3.997
9 N -0.901 5.901
10 Si 0.901 3.099
11 H -0.277 1.277
12 H -0.290 1.290
13 H -0.289 1.289
14 C 0.174 3.826
15 C -0.148 4.148
16 C 0.155 3.845
17 H 0.086 0.914
18 N -0.698 5.698
19 C 0.597 3.403
20 O -0.529 6.529
21 C -0.062 4.062
22 C 0.053 3.947
23 O -0.168 6.168
24 C 0.090 3.910
25 C 0.588 3.412
26 F -0.152 7.152
27 F -0.156 7.156
28 F -0.141 7.141
29 N -0.389 5.389
30 H 0.055 0.945
31 H 0.047 0.953
32 H 0.052 0.948
33 H 0.021 0.979
34 H 0.059 0.941
35 H 0.254 0.746
36 H 0.090 0.910
37 H 0.021 0.979
38 H 0.055 0.945
39 H 0.056 0.944
40 H 0.404 0.596
41 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.414 7.620 -19.104 25.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.136 4.136
3 H 0.091 0.909
4 C 0.028 3.972
5 N -0.315 5.315
6 C -0.383 4.383
7 H 0.084 0.916
8 C -0.196 4.196
9 N -0.545 5.545
10 Si 0.731 3.269
11 H -0.202 1.202
12 H -0.217 1.217
13 H -0.216 1.216
14 C 0.047 3.953
15 C -0.188 4.188
16 C 0.053 3.947
17 H 0.104 0.896
18 N -0.347 5.347
19 C 0.380 3.620
20 O -0.406 6.406
21 C -0.184 4.184
22 C -0.021 4.021
23 O -0.052 6.052
24 C -0.120 4.120
25 C 0.532 3.468
26 F -0.133 7.133
27 F -0.137 7.137
28 F -0.122 7.122
29 N -0.120 5.120
30 H 0.074 0.926
31 H 0.066 0.934
32 H 0.071 0.929
33 H 0.039 0.961
34 H 0.077 0.923
35 H 0.064 0.936
36 H 0.109 0.891
37 H 0.039 0.961
38 H 0.073 0.927
39 H 0.075 0.925
40 H 0.239 0.761
41 H 0.264 0.736
Dipole moment (debyes) X Y Z Total
from point charges -14.053 7.185 -18.629 24.417
hybrid contribution 0.563 0.518 -0.155 0.780
sum -13.490 7.703 -18.784 24.376
Atomic orbital electron populations
1.21782 0.95690 1.01587 1.01032 1.21986 0.94627 1.00736 0.96248
0.90873 1.20890 0.85926 0.96651 0.93708 1.44102 0.99298 1.71611
1.16468 1.19212 0.98028 1.12563 1.08503 0.91555 1.25037 0.99912
0.95386 0.99281 1.70048 1.21674 1.14686 1.48084 0.86243 0.81697
0.79246 0.79695 1.20247 1.21724 1.21576 1.20675 0.99509 0.93178
0.81922 1.22530 0.93532 1.01809 1.00945 1.21208 0.94806 0.96939
0.81774 0.89615 1.46159 1.63884 1.14815 1.09842 1.16579 0.78336
0.85633 0.81446 1.90875 1.50765 1.14840 1.84092 1.22235 1.09095
0.89683 0.97434 1.25792 0.93817 0.94370 0.88098 1.84403 1.62420
1.17869 1.40468 1.25432 1.08928 0.89819 0.87820 1.15954 0.75708
0.79586 0.75570 1.93330 1.55581 1.77037 1.87381 1.93307 1.66342
1.94382 1.59701 1.93333 1.82385 1.78653 1.57814 1.70665 1.09195
1.15743 1.16446 0.92597 0.93393 0.92872 0.96112 0.92262 0.93633
0.89145 0.96097 0.92675 0.92486 0.76055 0.73553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.90 9.02 37.16 0.34 -1.56 16
2 C -0.12 -1.88 2.46 -90.50 -0.22 -2.10 16
3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16
4 C 0.16 3.13 5.80 -3.71 -0.02 3.11 16
5 N -0.59 -14.52 3.00 -172.58 -0.52 -15.04 16
6 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16
7 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16
8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16
9 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16
10 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16
11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16
13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16
14 C 0.17 4.13 5.28 -3.93 -0.02 4.11 16
15 C -0.15 -2.88 5.64 -26.83 -0.15 -3.03 16
16 C 0.16 2.63 1.88 -67.89 -0.13 2.50 16
17 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16
18 N -0.70 -9.95 4.36 -54.85 -0.24 -10.19 16
19 C 0.60 8.54 7.78 -12.53 -0.10 8.45 16
20 O -0.53 -9.00 16.55 5.26 0.09 -8.91 16
21 C -0.06 -0.71 6.99 -83.02 -0.58 -1.29 16
22 C 0.05 0.45 11.95 29.96 0.36 0.81 16
23 O -0.17 -1.45 10.70 6.52 0.07 -1.38 16
24 C 0.09 0.86 7.53 -13.08 -0.10 0.76 16
25 C 0.59 4.76 3.57 36.01 0.13 4.89 16
26 F -0.15 -1.26 17.30 2.25 0.04 -1.22 16
27 F -0.16 -1.17 17.28 2.25 0.04 -1.13 16
28 F -0.14 -1.21 17.23 2.25 0.04 -1.17 16
29 N -0.39 -4.39 10.96 -7.65 -0.08 -4.47 16
30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.05 0.58 7.36 -51.93 -0.38 0.19 16
32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16
35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
36 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16
37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
40 H 0.40 5.17 8.04 -40.82 -0.33 4.84 16
41 H 0.25 1.22 8.06 -52.48 -0.42 0.80 16
LS Contribution 360.08 15.07 5.43 5.43
Total: -1.00 -30.75 360.08 -5.04 -35.79
By element:
Atomic # 1 Polarization: 6.34 SS G_CDS: -4.76 Total: 1.58 kcal
Atomic # 6 Polarization: 10.37 SS G_CDS: -0.73 Total: 9.64 kcal
Atomic # 7 Polarization: -54.88 SS G_CDS: -0.22 Total: -55.10 kcal
Atomic # 8 Polarization: -10.45 SS G_CDS: 0.16 Total: -10.29 kcal
Atomic # 9 Polarization: -3.64 SS G_CDS: 0.12 Total: -3.52 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -30.75 -5.04 -35.79 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942273968.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.540 kcal
(2) G-P(sol) polarization free energy of solvation -30.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.289 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.327 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds