Wall clock time and date at job start Wed Apr 1 2020 06:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.52519 * 2 1 4 4 C 1.53194 * 109.49737 * 120.07791 * 2 1 3 5 5 N 1.46929 * 108.77338 * 174.58832 * 4 2 1 6 6 C 1.36938 * 120.63009 * 126.37152 * 5 4 2 7 7 H 1.07996 * 120.00094 * 332.58562 * 6 5 4 8 8 C 1.38813 * 119.99821 * 152.58705 * 6 5 4 9 9 N 1.31611 * 120.00201 * 342.49359 * 8 6 5 10 10 Si 1.86804 * 119.99923 * 162.76680 * 8 6 5 11 11 H 1.48497 * 109.46990 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47259 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47133 * 240.00312 * 10 8 6 14 14 C 1.46929 * 118.73866 * 306.64350 * 5 4 2 15 15 C 1.52760 * 109.00960 * 53.30862 * 14 5 4 16 16 C 1.53039 * 109.49629 * 239.91598 * 2 1 3 17 17 H 1.08994 * 109.46088 * 298.69709 * 16 2 1 18 18 N 1.46494 * 109.46176 * 58.66545 * 16 2 1 19 19 C 1.34770 * 120.00365 * 205.00294 * 18 16 2 20 20 O 1.21615 * 119.99622 * 359.97438 * 19 18 16 21 21 C 1.47419 * 120.00625 * 179.97438 * 19 18 16 22 22 C 1.36090 * 126.45507 * 179.97438 * 21 19 18 23 23 O 1.34254 * 106.95196 * 179.97438 * 22 21 19 24 24 C 1.34051 * 108.22660 * 359.97438 * 23 22 21 25 25 C 1.50703 * 125.37723 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47143 * 269.97871 * 25 24 23 27 27 F 1.39905 * 109.46815 * 29.97711 * 25 24 23 28 28 F 1.39894 * 109.46990 * 149.97165 * 25 24 23 29 29 N 1.29931 * 109.24239 * 359.74587 * 24 23 22 30 30 H 1.09005 * 109.47218 * 299.92072 * 1 2 3 31 31 H 1.08993 * 109.47324 * 59.91977 * 1 2 3 32 32 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58900 * 54.80367 * 4 2 1 34 34 H 1.08997 * 109.70721 * 294.44191 * 4 2 1 35 35 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.58872 * 173.15048 * 14 5 4 37 37 H 1.09003 * 109.58399 * 293.56745 * 14 5 4 38 38 H 1.08994 * 109.56594 * 185.55179 * 15 14 5 39 39 H 1.09001 * 109.38476 * 65.51623 * 15 14 5 40 40 H 0.97010 * 119.99892 * 24.99271 * 18 16 2 41 41 H 1.08003 * 126.51792 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2936 -0.3783 2.1941 7 1 3.9448 0.4189 2.8338 8 6 5.5416 -0.9462 2.4104 9 7 5.8329 -2.1159 1.8822 10 14 6.8051 -0.0536 3.4576 11 1 6.2333 1.2307 3.9357 12 1 7.1679 -0.8989 4.6233 13 1 8.0186 0.2172 2.6456 14 6 4.1055 -1.4215 -0.0332 15 6 3.5708 -0.6950 -1.2660 16 6 2.0407 -0.7232 -1.2483 17 1 1.6967 -1.7573 -1.2351 18 7 1.5265 -0.0531 -2.4452 19 6 1.3984 -0.7384 -3.5986 20 8 1.7101 -1.9129 -3.6458 21 6 0.8804 -0.0643 -4.8030 22 6 0.6986 -0.6262 -6.0291 23 8 0.2115 0.3338 -6.8313 24 6 0.0958 1.4606 -6.1144 25 6 -0.4145 2.7788 -6.6370 26 9 0.6560 3.5282 -7.1365 27 9 -1.3399 2.5478 -7.6605 28 9 -1.0334 3.4837 -5.5992 29 7 0.4875 1.2351 -4.8962 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -1.7216 1.2981 34 1 1.7637 -0.1600 2.1403 35 1 6.7052 -2.5126 2.0331 36 1 5.1895 -1.3159 0.0100 37 1 3.8413 -2.4774 -0.0914 38 1 3.9334 -1.1897 -2.1670 39 1 3.9159 0.3389 -1.2547 40 1 1.2781 0.8839 -2.4076 41 1 0.9060 -1.6498 -6.3041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942273968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:54 Heat of formation + Delta-G solvation = -136.327266 kcal Electronic energy + Delta-G solvation = -30705.773860 eV Core-core repulsion = 25787.492556 eV Total energy + Delta-G solvation = -4918.281303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.88983 -48.41789 -48.38228 -44.23528 -39.87202 -37.73961 -35.69100 -34.61572 -32.70615 -31.97314 -31.21650 -29.88589 -27.40567 -26.02887 -25.61142 -24.15112 -22.79182 -22.13137 -21.05106 -20.76896 -19.83022 -19.36750 -19.14118 -18.91272 -17.75422 -17.39437 -16.93091 -16.60816 -16.00051 -15.20289 -15.17145 -14.92401 -14.76759 -14.74907 -14.53458 -14.48927 -14.47980 -14.12648 -13.86282 -13.60000 -13.49133 -13.29402 -12.84512 -12.68640 -12.22936 -12.05835 -11.69068 -11.50956 -11.33349 -11.10645 -10.86985 -10.67619 -10.42003 -10.25804 -10.23488 -10.02150 -9.96691 -9.81314 -9.55200 -8.79873 -8.45075 -6.71044 -5.80095 -3.22485 0.32370 0.96772 1.16349 2.08511 2.64207 3.01853 3.05869 3.36874 3.44922 3.46866 3.48999 3.54501 4.03382 4.27682 4.48227 4.59235 4.88689 5.05685 5.19014 5.28649 5.38890 5.48895 5.56373 5.85034 5.95505 6.07344 6.22121 6.23049 6.28668 6.42235 6.48255 6.56264 6.64443 6.74682 6.84258 6.93605 7.34209 7.53450 7.65585 7.78875 8.11517 8.42921 9.19256 9.82696 10.38706 11.28557 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.002330 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.689183 B =12012.622570 C =12210.652544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.073 0.927 4 C 0.156 3.844 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.067 0.933 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.901 3.099 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.174 3.826 15 C -0.148 4.148 16 C 0.155 3.845 17 H 0.086 0.914 18 N -0.698 5.698 19 C 0.597 3.403 20 O -0.529 6.529 21 C -0.062 4.062 22 C 0.053 3.947 23 O -0.168 6.168 24 C 0.090 3.910 25 C 0.588 3.412 26 F -0.152 7.152 27 F -0.156 7.156 28 F -0.141 7.141 29 N -0.389 5.389 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.059 0.941 35 H 0.254 0.746 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.404 0.596 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.414 7.620 -19.104 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.091 0.909 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.731 3.269 11 H -0.202 1.202 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.347 5.347 19 C 0.380 3.620 20 O -0.406 6.406 21 C -0.184 4.184 22 C -0.021 4.021 23 O -0.052 6.052 24 C -0.120 4.120 25 C 0.532 3.468 26 F -0.133 7.133 27 F -0.137 7.137 28 F -0.122 7.122 29 N -0.120 5.120 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.239 0.761 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -14.053 7.185 -18.629 24.417 hybrid contribution 0.563 0.518 -0.155 0.780 sum -13.490 7.703 -18.784 24.376 Atomic orbital electron populations 1.21782 0.95690 1.01587 1.01032 1.21986 0.94627 1.00736 0.96248 0.90873 1.20890 0.85926 0.96651 0.93708 1.44102 0.99298 1.71611 1.16468 1.19212 0.98028 1.12563 1.08503 0.91555 1.25037 0.99912 0.95386 0.99281 1.70048 1.21674 1.14686 1.48084 0.86243 0.81697 0.79246 0.79695 1.20247 1.21724 1.21576 1.20675 0.99509 0.93178 0.81922 1.22530 0.93532 1.01809 1.00945 1.21208 0.94806 0.96939 0.81774 0.89615 1.46159 1.63884 1.14815 1.09842 1.16579 0.78336 0.85633 0.81446 1.90875 1.50765 1.14840 1.84092 1.22235 1.09095 0.89683 0.97434 1.25792 0.93817 0.94370 0.88098 1.84403 1.62420 1.17869 1.40468 1.25432 1.08928 0.89819 0.87820 1.15954 0.75708 0.79586 0.75570 1.93330 1.55581 1.77037 1.87381 1.93307 1.66342 1.94382 1.59701 1.93333 1.82385 1.78653 1.57814 1.70665 1.09195 1.15743 1.16446 0.92597 0.93393 0.92872 0.96112 0.92262 0.93633 0.89145 0.96097 0.92675 0.92486 0.76055 0.73553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.02 37.16 0.34 -1.56 16 2 C -0.12 -1.88 2.46 -90.50 -0.22 -2.10 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 4 C 0.16 3.13 5.80 -3.71 -0.02 3.11 16 5 N -0.59 -14.52 3.00 -172.58 -0.52 -15.04 16 6 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 7 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 9 N -0.90 -26.02 11.20 55.49 0.62 -25.40 16 10 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 C 0.17 4.13 5.28 -3.93 -0.02 4.11 16 15 C -0.15 -2.88 5.64 -26.83 -0.15 -3.03 16 16 C 0.16 2.63 1.88 -67.89 -0.13 2.50 16 17 H 0.09 1.60 7.58 -51.93 -0.39 1.20 16 18 N -0.70 -9.95 4.36 -54.85 -0.24 -10.19 16 19 C 0.60 8.54 7.78 -12.53 -0.10 8.45 16 20 O -0.53 -9.00 16.55 5.26 0.09 -8.91 16 21 C -0.06 -0.71 6.99 -83.02 -0.58 -1.29 16 22 C 0.05 0.45 11.95 29.96 0.36 0.81 16 23 O -0.17 -1.45 10.70 6.52 0.07 -1.38 16 24 C 0.09 0.86 7.53 -13.08 -0.10 0.76 16 25 C 0.59 4.76 3.57 36.01 0.13 4.89 16 26 F -0.15 -1.26 17.30 2.25 0.04 -1.22 16 27 F -0.16 -1.17 17.28 2.25 0.04 -1.13 16 28 F -0.14 -1.21 17.23 2.25 0.04 -1.17 16 29 N -0.39 -4.39 10.96 -7.65 -0.08 -4.47 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.58 7.36 -51.93 -0.38 0.19 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.40 5.17 8.04 -40.82 -0.33 4.84 16 41 H 0.25 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -30.75 360.08 -5.04 -35.79 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.76 Total: 1.58 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.73 Total: 9.64 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.22 Total: -55.10 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.16 Total: -10.29 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.12 Total: -3.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.75 -5.04 -35.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.540 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds