Wall clock time and date at job start Wed Apr 1 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.52519 * 2 1 4 4 C 1.53194 * 109.49737 * 120.07791 * 2 1 3 5 5 N 1.46929 * 108.77338 * 174.58832 * 4 2 1 6 6 C 1.36938 * 120.63009 * 126.37152 * 5 4 2 7 7 H 1.07996 * 120.00094 * 332.58562 * 6 5 4 8 8 C 1.38813 * 119.99821 * 152.58705 * 6 5 4 9 9 N 1.31611 * 120.00201 * 342.49359 * 8 6 5 10 10 Si 1.86804 * 119.99923 * 162.76680 * 8 6 5 11 11 H 1.48497 * 109.46990 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47259 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47133 * 240.00312 * 10 8 6 14 14 C 1.46929 * 118.73866 * 306.64350 * 5 4 2 15 15 C 1.52760 * 109.00960 * 53.30862 * 14 5 4 16 16 C 1.53039 * 109.49629 * 239.91598 * 2 1 3 17 17 H 1.08994 * 109.46088 * 298.69709 * 16 2 1 18 18 N 1.46494 * 109.46176 * 58.66545 * 16 2 1 19 19 C 1.34770 * 120.00365 * 205.00294 * 18 16 2 20 20 O 1.21615 * 119.99622 * 359.97438 * 19 18 16 21 21 C 1.47419 * 120.00625 * 179.97438 * 19 18 16 22 22 C 1.36090 * 126.45507 * 179.97438 * 21 19 18 23 23 O 1.34254 * 106.95196 * 179.97438 * 22 21 19 24 24 C 1.34051 * 108.22660 * 359.97438 * 23 22 21 25 25 C 1.50703 * 125.37723 * 180.02562 * 24 23 22 26 26 F 1.39894 * 109.47143 * 269.97871 * 25 24 23 27 27 F 1.39905 * 109.46815 * 29.97711 * 25 24 23 28 28 F 1.39894 * 109.46990 * 149.97165 * 25 24 23 29 29 N 1.29931 * 109.24239 * 359.74587 * 24 23 22 30 30 H 1.09005 * 109.47218 * 299.92072 * 1 2 3 31 31 H 1.08993 * 109.47324 * 59.91977 * 1 2 3 32 32 H 1.09004 * 109.47251 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.58900 * 54.80367 * 4 2 1 34 34 H 1.08997 * 109.70721 * 294.44191 * 4 2 1 35 35 H 0.97008 * 119.99943 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.58872 * 173.15048 * 14 5 4 37 37 H 1.09003 * 109.58399 * 293.56745 * 14 5 4 38 38 H 1.08994 * 109.56594 * 185.55179 * 15 14 5 39 39 H 1.09001 * 109.38476 * 65.51623 * 15 14 5 40 40 H 0.97010 * 119.99892 * 24.99271 * 18 16 2 41 41 H 1.08003 * 126.51792 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8290 1.1696 6 6 4.2936 -0.3783 2.1941 7 1 3.9448 0.4189 2.8338 8 6 5.5416 -0.9462 2.4104 9 7 5.8329 -2.1159 1.8822 10 14 6.8051 -0.0536 3.4576 11 1 6.2333 1.2307 3.9357 12 1 7.1679 -0.8989 4.6233 13 1 8.0186 0.2172 2.6456 14 6 4.1055 -1.4215 -0.0332 15 6 3.5708 -0.6950 -1.2660 16 6 2.0407 -0.7232 -1.2483 17 1 1.6967 -1.7573 -1.2351 18 7 1.5265 -0.0531 -2.4452 19 6 1.3984 -0.7384 -3.5986 20 8 1.7101 -1.9129 -3.6458 21 6 0.8804 -0.0643 -4.8030 22 6 0.6986 -0.6262 -6.0291 23 8 0.2115 0.3338 -6.8313 24 6 0.0958 1.4606 -6.1144 25 6 -0.4145 2.7788 -6.6370 26 9 0.6560 3.5282 -7.1365 27 9 -1.3399 2.5478 -7.6605 28 9 -1.0334 3.4837 -5.5992 29 7 0.4875 1.2351 -4.8962 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6053 -1.7216 1.2981 34 1 1.7637 -0.1600 2.1403 35 1 6.7052 -2.5126 2.0331 36 1 5.1895 -1.3159 0.0100 37 1 3.8413 -2.4774 -0.0914 38 1 3.9334 -1.1897 -2.1670 39 1 3.9159 0.3389 -1.2547 40 1 1.2781 0.8839 -2.4076 41 1 0.9060 -1.6498 -6.3041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942273968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:48 Heat of formation + Delta-G solvation = -158.088357 kcal Electronic energy + Delta-G solvation = -30706.717491 eV Core-core repulsion = 25787.492556 eV Total energy + Delta-G solvation = -4919.224935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -51.52285 -49.03457 -49.02791 -44.98700 -41.12884 -39.23312 -36.51153 -36.23202 -34.21124 -32.97701 -32.76010 -31.57045 -28.15571 -27.43092 -27.21714 -25.42820 -23.81990 -23.30465 -22.65258 -21.87850 -21.16315 -20.10985 -20.00809 -19.67967 -18.81127 -18.53299 -18.12620 -17.59807 -17.32362 -16.75025 -16.07282 -15.86146 -15.79704 -15.67355 -15.61188 -15.39537 -15.29123 -15.12012 -15.10976 -14.98622 -14.72912 -14.57349 -14.23420 -14.14358 -13.62657 -13.09284 -13.03291 -12.94375 -12.74914 -12.63354 -12.47661 -12.30782 -12.09757 -12.03064 -11.71766 -11.59736 -11.48488 -11.16663 -10.75957 -10.57893 -10.08379 -8.71929 -7.87917 -5.33198 -0.38826 0.28680 0.29043 1.37363 1.46706 1.48883 1.59266 1.88127 1.99760 2.05458 2.51311 2.84934 2.90607 3.17435 3.27931 3.41165 3.63523 3.72727 3.84818 4.00304 4.13898 4.23850 4.33650 4.37168 4.59094 4.70067 4.71881 4.84008 4.88134 4.99662 5.08074 5.11964 5.27478 5.37454 5.43848 5.50263 5.63681 5.69517 5.73586 6.37900 6.40366 6.99300 7.13243 7.84003 8.36089 9.19258 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.002330 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.689183 B =12012.622570 C =12210.652544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 H 0.076 0.924 4 C 0.151 3.849 5 N -0.610 5.610 6 C -0.260 4.260 7 H 0.072 0.928 8 C -0.052 4.052 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.264 1.264 12 H -0.293 1.293 13 H -0.292 1.292 14 C 0.183 3.817 15 C -0.133 4.133 16 C 0.169 3.831 17 H 0.069 0.931 18 N -0.692 5.692 19 C 0.601 3.399 20 O -0.560 6.560 21 C -0.093 4.093 22 C 0.088 3.912 23 O -0.161 6.161 24 C 0.090 3.910 25 C 0.596 3.404 26 F -0.152 7.152 27 F -0.150 7.150 28 F -0.143 7.143 29 N -0.403 5.403 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.249 0.751 36 H 0.056 0.944 37 H -0.006 1.006 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.414 0.586 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.978 9.179 -20.366 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 H 0.094 0.906 4 C 0.025 3.975 5 N -0.333 5.333 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.248 4.248 9 N -0.582 5.582 10 Si 0.795 3.205 11 H -0.188 1.188 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.056 3.944 15 C -0.173 4.173 16 C 0.064 3.936 17 H 0.087 0.913 18 N -0.341 5.341 19 C 0.386 3.614 20 O -0.439 6.439 21 C -0.215 4.215 22 C 0.014 3.986 23 O -0.044 6.044 24 C -0.120 4.120 25 C 0.540 3.460 26 F -0.133 7.133 27 F -0.131 7.131 28 F -0.124 7.124 29 N -0.135 5.135 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.251 0.749 41 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -15.664 8.791 -19.902 26.809 hybrid contribution 0.995 0.000 0.179 1.011 sum -14.669 8.790 -19.723 26.105 Atomic orbital electron populations 1.21709 0.92772 1.02036 1.02657 1.21779 0.96852 0.99857 0.93732 0.90556 1.21063 0.83445 0.96917 0.96048 1.44345 1.01130 1.71603 1.16209 1.19569 0.98530 1.12296 1.08630 0.91060 1.25811 1.01825 0.96079 1.01053 1.70205 1.21785 1.16259 1.49977 0.85218 0.79030 0.78457 0.77807 1.18802 1.22034 1.21883 1.20387 0.97708 0.92334 0.83924 1.22275 0.95677 1.00899 0.98455 1.20807 0.92753 0.96564 0.83428 0.91318 1.45898 1.63897 1.15169 1.09175 1.16825 0.77395 0.85241 0.81935 1.90862 1.52116 1.16244 1.84701 1.21822 1.11960 0.90330 0.97362 1.26422 0.90436 0.95041 0.86744 1.84457 1.62123 1.17662 1.40138 1.25615 1.08528 0.90413 0.87472 1.15777 0.75662 0.79004 0.75523 1.93333 1.55674 1.76958 1.87356 1.93323 1.66099 1.94316 1.59391 1.93331 1.82420 1.78645 1.58032 1.70580 1.09749 1.15772 1.17417 0.91123 0.91618 0.93035 0.96762 0.91699 0.94149 0.92544 0.98827 0.92848 0.92362 0.74881 0.70259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.02 71.98 0.65 -2.57 16 2 C -0.10 -3.18 2.46 -10.72 -0.03 -3.21 16 3 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 4 C 0.15 6.05 5.80 86.36 0.50 6.55 16 5 N -0.61 -30.46 3.00 -699.92 -2.10 -32.56 16 6 C -0.26 -14.18 9.59 84.03 0.81 -13.37 16 7 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 8 C -0.05 -2.94 4.91 84.86 0.42 -2.52 16 9 N -0.94 -56.00 11.20 21.65 0.24 -55.76 16 10 Si 0.97 44.85 29.59 68.60 2.03 46.88 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.18 9.08 5.28 86.22 0.46 9.53 16 15 C -0.13 -5.25 5.64 30.53 0.17 -5.08 16 16 C 0.17 5.62 1.88 45.02 0.08 5.70 16 17 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 18 N -0.69 -18.81 4.36 -445.69 -1.94 -20.75 16 19 C 0.60 16.43 7.78 86.66 0.67 17.10 16 20 O -0.56 -18.67 16.55 -4.08 -0.07 -18.74 16 21 C -0.09 -1.95 6.99 40.41 0.28 -1.67 16 22 C 0.09 1.23 11.95 67.32 0.80 2.03 16 23 O -0.16 -2.30 10.70 0.41 0.00 -2.30 16 24 C 0.09 1.52 7.53 88.39 0.67 2.19 16 25 C 0.60 8.42 3.57 71.24 0.25 8.68 16 26 F -0.15 -2.22 17.30 44.97 0.78 -1.44 16 27 F -0.15 -1.91 17.28 44.97 0.78 -1.14 16 28 F -0.14 -2.20 17.23 44.97 0.77 -1.43 16 29 N -0.40 -8.27 10.96 -293.03 -3.21 -11.48 16 30 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.06 1.38 7.36 -2.39 -0.02 1.36 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 35 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 36 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.41 9.78 8.04 -92.70 -0.74 9.03 16 41 H 0.28 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -67.99 360.08 3.37 -64.62 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.35 Total: 10.73 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 5.74 Total: 23.37 kcal Atomic # 7 Polarization: -113.54 SS G_CDS: -7.01 Total: -120.56 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 2.33 Total: -4.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -67.99 3.37 -64.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942273968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.471 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds