Wall clock time and date at job start Wed Apr 1 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.49611 * 2 1 4 4 C 1.52759 * 109.56584 * 240.02660 * 2 1 3 5 5 N 1.46926 * 109.00774 * 185.55384 * 4 2 1 6 6 C 1.36943 * 120.62758 * 233.58797 * 5 4 2 7 7 H 1.08001 * 119.99843 * 152.31122 * 6 5 4 8 8 C 1.38806 * 120.00009 * 332.30151 * 6 5 4 9 9 N 1.31616 * 120.00310 * 342.50379 * 8 6 5 10 10 Si 1.86803 * 120.00066 * 162.77785 * 8 6 5 11 11 H 1.48498 * 109.47141 * 89.99944 * 10 8 6 12 12 H 1.48497 * 109.47309 * 210.00396 * 10 8 6 13 13 H 1.48503 * 109.46936 * 330.00322 * 10 8 6 14 14 C 1.46923 * 118.74121 * 53.30670 * 5 4 2 15 15 C 1.53185 * 108.77652 * 306.64678 * 14 5 4 16 16 C 1.53041 * 109.31552 * 54.63248 * 15 14 5 17 17 H 1.09003 * 109.45585 * 58.64165 * 16 15 14 18 18 N 1.46501 * 109.46066 * 178.61495 * 16 15 14 19 19 C 1.34773 * 119.99886 * 274.99890 * 18 16 15 20 20 O 1.21686 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.46723 * 120.00248 * 180.02562 * 19 18 16 22 22 O 1.35350 * 126.63896 * 359.68930 * 21 19 18 23 23 C 1.33666 * 107.67902 * 179.83665 * 22 21 19 24 24 N 1.30614 * 109.15905 * 0.43323 * 23 22 21 25 25 C 1.33698 * 108.99428 * 359.73231 * 24 23 22 26 26 C 1.50697 * 126.27576 * 179.97438 * 25 24 23 27 27 F 1.39904 * 109.47148 * 270.03848 * 26 25 24 28 28 F 1.39901 * 109.46909 * 30.03672 * 26 25 24 29 29 F 1.39899 * 109.47475 * 150.03613 * 26 25 24 30 30 H 1.09003 * 109.47124 * 299.93977 * 1 2 3 31 31 H 1.08997 * 109.47281 * 59.93960 * 1 2 3 32 32 H 1.08997 * 109.46847 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.50461 * 65.67355 * 4 2 1 34 34 H 1.08998 * 109.43426 * 305.38910 * 4 2 1 35 35 H 0.96999 * 120.00787 * 179.97438 * 9 8 6 36 36 H 1.09006 * 109.58258 * 66.43251 * 14 5 4 37 37 H 1.09006 * 109.58702 * 186.71184 * 14 5 4 38 38 H 1.09001 * 109.49683 * 174.58184 * 15 14 5 39 39 H 1.09003 * 109.49731 * 294.64570 * 15 14 5 40 40 H 0.96998 * 119.99880 * 95.00332 * 18 16 15 41 41 H 1.08005 * 125.41729 * 180.15951 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7191 -1.2469 5 7 3.5046 -0.8295 -1.1692 6 6 4.2936 -0.3791 -2.1939 7 1 5.3003 -0.0434 -1.9928 8 6 3.7997 -0.3542 -3.4908 9 7 2.7352 -1.0624 -3.8034 10 14 4.6502 0.6784 -4.7946 11 1 5.6904 -0.1373 -5.4713 12 1 3.6513 1.1349 -5.7940 13 1 5.2853 1.8585 -4.1548 14 6 4.1053 -1.4266 0.0313 15 6 3.5708 -0.6946 1.2663 16 6 2.0408 -0.7226 1.2486 17 1 1.6968 -1.7569 1.2357 18 7 1.5265 -0.0521 2.4454 19 6 1.3972 -0.7374 3.5986 20 8 1.7080 -1.9129 3.6461 21 6 0.8816 -0.0660 4.7971 22 8 0.5032 1.2296 4.8974 23 6 0.0934 1.4368 6.1527 24 7 0.2121 0.3270 6.8311 25 6 0.6964 -0.6250 6.0268 26 6 0.9851 -2.0536 6.4094 27 9 2.3031 -2.1566 6.8673 28 9 0.1069 -2.4515 7.4232 29 9 0.8134 -2.8793 5.2932 30 1 -0.3633 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7646 -0.1502 -2.1344 34 1 1.6021 -1.7153 -1.2969 35 1 2.3898 -1.0448 -4.7096 36 1 3.8375 -2.4818 0.0876 37 1 5.1898 -1.3268 -0.0144 38 1 3.9334 -1.1890 2.1675 39 1 3.9164 0.3392 1.2543 40 1 1.2790 0.8850 2.4076 41 1 -0.2730 2.3741 6.5449 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942529185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:26:17 Heat of formation + Delta-G solvation = -132.915943 kcal Electronic energy + Delta-G solvation = -31657.808109 eV Core-core repulsion = 26739.674731 eV Total energy + Delta-G solvation = -4918.133377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.21405 -47.77494 -47.63908 -44.17743 -40.02771 -37.82407 -35.91324 -34.69538 -32.63025 -31.96432 -31.59920 -29.54241 -27.19650 -26.03896 -25.33218 -24.22301 -22.88702 -22.08526 -21.01111 -20.85015 -19.84506 -19.04343 -18.69494 -18.37089 -17.91569 -17.40072 -16.80769 -16.36973 -16.19074 -15.01641 -14.92463 -14.86689 -14.65627 -14.40436 -14.33996 -14.09557 -13.91708 -13.81454 -13.77836 -13.62589 -13.26572 -12.98163 -12.69407 -12.61288 -12.28985 -12.18206 -11.58039 -11.55364 -11.41313 -11.15375 -10.83252 -10.73591 -10.50114 -10.46489 -10.21749 -10.09580 -9.90856 -9.82044 -9.60786 -8.96983 -8.52271 -6.75773 -5.85298 -3.27063 0.06509 1.61947 1.67469 2.26714 2.68301 2.86834 3.21850 3.33734 3.41191 3.42954 3.54061 4.04819 4.19156 4.41793 4.44535 4.61384 4.75327 5.08289 5.22595 5.25850 5.36455 5.44170 5.56586 5.74579 5.95059 5.97769 6.06965 6.21077 6.29670 6.38076 6.46789 6.57107 6.65686 6.70258 6.76427 6.90432 7.24319 7.26675 7.56381 7.74445 7.83565 8.38096 9.14550 9.77712 10.33882 11.23648 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.022841 B = 0.002652 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.563634 B =10554.062397 C =10973.329314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 H 0.069 0.931 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.142 4.142 16 C 0.154 3.846 17 H 0.090 0.910 18 N -0.697 5.697 19 C 0.587 3.413 20 O -0.487 6.487 21 C -0.018 4.018 22 O -0.175 6.175 23 C 0.211 3.789 24 N -0.459 5.459 25 C -0.038 4.038 26 C 0.552 3.448 27 F -0.167 7.167 28 F -0.168 7.168 29 F -0.137 7.137 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.022 0.978 35 H 0.254 0.746 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.402 0.598 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 6.008 19.488 21.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 H 0.088 0.912 4 C 0.054 3.946 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.205 1.205 14 C 0.021 3.979 15 C -0.182 4.182 16 C 0.052 3.948 17 H 0.108 0.892 18 N -0.346 5.346 19 C 0.368 3.632 20 O -0.362 6.362 21 C -0.077 4.077 22 O -0.060 6.060 23 C -0.015 4.015 24 N -0.185 5.185 25 C -0.163 4.163 26 C 0.496 3.504 27 F -0.148 7.148 28 F -0.149 7.149 29 F -0.118 7.118 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -7.579 5.063 19.907 21.895 hybrid contribution 0.331 1.157 -1.082 1.618 sum -7.248 6.219 18.825 21.109 Atomic orbital electron populations 1.21747 0.95720 1.01666 1.00722 1.22127 0.94843 1.00784 0.96537 0.91214 1.20725 0.83129 0.97232 0.93494 1.44095 1.01725 1.69363 1.16321 1.19172 0.97639 1.35710 0.85856 0.91602 1.25028 0.98489 0.99050 0.96964 1.70022 1.25542 1.40108 1.18902 0.86318 0.78696 0.80379 0.81504 1.21351 1.21548 1.20499 1.20874 0.96836 0.94343 0.85894 1.22425 0.94145 1.01693 0.99922 1.21309 0.94282 0.97456 0.81761 0.89218 1.46278 1.63901 1.14582 1.09881 1.16421 0.79652 0.86088 0.81001 1.91046 1.49040 1.13469 1.82653 1.23476 1.04290 0.82072 0.97815 1.84619 1.60886 1.26670 1.33813 1.28503 0.96230 0.99759 0.76990 1.70174 1.16514 0.98957 1.32886 1.21717 1.07007 0.96396 0.91148 1.16724 0.74783 0.83454 0.75404 1.93246 1.36058 1.96431 1.89061 1.93227 1.69035 1.91704 1.60959 1.93420 1.94904 1.72969 1.50521 0.93992 0.92340 0.92802 0.88836 0.95983 0.93555 0.95968 0.92335 0.92403 0.92061 0.76323 0.71584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.03 37.16 0.34 -1.67 16 2 C -0.12 -2.05 2.44 -90.72 -0.22 -2.27 16 3 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.18 4.00 4.57 -3.93 -0.02 3.98 16 5 N -0.59 -14.16 3.00 -172.59 -0.52 -14.68 16 6 C -0.25 -6.72 9.59 -15.06 -0.14 -6.86 16 7 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 8 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.25 11.20 55.49 0.62 -24.63 16 10 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C 0.15 3.01 6.52 -3.72 -0.02 2.99 16 15 C -0.14 -2.41 5.65 -26.61 -0.15 -2.56 16 16 C 0.15 2.45 1.88 -67.89 -0.13 2.33 16 17 H 0.09 1.60 7.57 -51.93 -0.39 1.20 16 18 N -0.70 -8.97 4.36 -55.06 -0.24 -9.21 16 19 C 0.59 8.11 7.70 -12.83 -0.10 8.01 16 20 O -0.49 -8.19 12.79 5.20 0.07 -8.13 16 21 C -0.02 -0.21 7.14 -36.84 -0.26 -0.47 16 22 O -0.18 -1.47 10.57 4.40 0.05 -1.42 16 23 C 0.21 1.32 13.21 52.24 0.69 2.01 16 24 N -0.46 -4.74 11.21 -10.88 -0.12 -4.86 16 25 C -0.04 -0.47 6.49 -82.46 -0.54 -1.00 16 26 C 0.55 7.39 3.34 36.00 0.12 7.51 16 27 F -0.17 -2.29 17.30 2.25 0.04 -2.25 16 28 F -0.17 -2.17 17.27 2.25 0.04 -2.13 16 29 F -0.14 -2.06 13.47 2.25 0.03 -2.03 16 30 H 0.04 0.50 7.36 -51.93 -0.38 0.11 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.40 4.22 8.11 -40.82 -0.33 3.89 16 41 H 0.27 0.04 8.06 -52.48 -0.42 -0.39 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -31.40 352.81 -5.04 -36.44 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.76 Total: -0.40 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -0.52 Total: 12.01 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.26 Total: -53.38 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.11 Total: -9.55 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.40 -5.04 -36.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942529185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.479 kcal (2) G-P(sol) polarization free energy of solvation -31.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds