Wall clock time and date at job start Wed Apr 1 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.70026 * 2 1 4 4 C 1.53198 * 109.58435 * 239.64774 * 2 1 3 5 5 C 1.53036 * 109.31205 * 185.57488 * 4 2 1 6 6 H 1.09003 * 109.46218 * 301.34523 * 5 4 2 7 7 N 1.46498 * 109.46007 * 181.38775 * 5 4 2 8 8 C 1.34779 * 119.99979 * 154.93188 * 7 5 4 9 9 O 1.21578 * 120.00351 * 359.97438 * 8 7 5 10 10 C 1.47513 * 119.99706 * 180.02562 * 8 7 5 11 11 C 1.36828 * 126.94369 * 180.02562 * 10 8 7 12 12 C 1.41256 * 103.84605 * 179.97438 * 11 10 8 13 13 C 1.50709 * 126.70101 * 180.02562 * 12 11 10 14 14 F 1.39900 * 109.46724 * 90.00250 * 13 12 11 15 15 F 1.39900 * 109.46881 * 209.99479 * 13 12 11 16 16 F 1.39898 * 109.47026 * 330.00125 * 13 12 11 17 17 N 1.30122 * 106.59209 * 359.97438 * 12 11 10 18 18 O 1.20890 * 111.98258 * 359.70232 * 17 12 11 19 19 C 1.53039 * 109.53975 * 61.36491 * 5 4 2 20 20 C 1.53192 * 109.31500 * 298.63840 * 19 5 4 21 21 N 1.46921 * 108.77716 * 54.62899 * 20 19 5 22 22 C 1.36935 * 120.63039 * 126.41625 * 21 20 19 23 23 H 1.08004 * 119.99871 * 208.99632 * 22 21 20 24 24 C 1.38814 * 119.99884 * 28.99749 * 22 21 20 25 25 N 1.31612 * 120.00200 * 15.03459 * 24 22 21 26 26 Si 1.86798 * 119.99944 * 195.03093 * 24 22 21 27 27 H 1.48503 * 109.47280 * 59.99851 * 26 24 22 28 28 H 1.48501 * 109.47190 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47276 * 300.00228 * 26 24 22 30 30 H 1.08996 * 109.46989 * 180.35559 * 1 2 3 31 31 H 1.08999 * 109.46902 * 300.34849 * 1 2 3 32 32 H 1.08992 * 109.47235 * 60.34992 * 1 2 3 33 33 H 1.09002 * 109.49612 * 65.62489 * 4 2 1 34 34 H 1.08991 * 109.52557 * 305.54699 * 4 2 1 35 35 H 0.97003 * 119.99993 * 334.93363 * 7 5 4 36 36 H 1.08006 * 128.07534 * 0.02562 * 11 10 8 37 37 H 1.09005 * 109.49562 * 58.58851 * 19 5 4 38 38 H 1.08993 * 109.49979 * 178.68078 * 19 5 4 39 39 H 1.08993 * 109.58969 * 174.41839 * 20 19 5 40 40 H 1.09001 * 109.58344 * 294.84356 * 20 19 5 41 41 H 0.96996 * 120.00390 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 1 4.0061 0.1474 -1.0995 7 7 4.0651 -1.5156 -2.3756 8 6 5.3289 -1.3008 -2.7918 9 8 6.0558 -0.5527 -2.1673 10 6 5.8298 -1.9727 -4.0058 11 6 7.0788 -1.8589 -4.5527 12 6 7.0287 -2.6987 -5.6875 13 6 8.1436 -2.9540 -6.6689 14 9 8.9014 -4.0486 -6.2393 15 9 7.6016 -3.2280 -7.9293 16 9 8.9624 -1.8225 -6.7492 17 7 5.8324 -3.2095 -5.7192 18 8 5.1526 -2.8274 -4.7955 19 6 3.9570 -1.6657 0.0632 20 6 3.4651 -0.9470 1.3236 21 7 2.0227 -0.6996 1.1944 22 6 1.1539 -1.1128 2.1689 23 1 0.1360 -1.3671 1.9124 24 6 1.5815 -1.2049 3.4863 25 7 2.7047 -0.6268 3.8556 26 14 0.5627 -2.1493 4.7351 27 1 0.4329 -3.5634 4.3003 28 1 1.2312 -2.0977 6.0601 29 1 -0.7865 -1.5373 4.8377 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3633 0.5192 0.8868 32 1 -0.3633 0.5083 -0.8930 33 1 1.7659 -0.1667 -2.1369 34 1 1.6030 -1.7252 -1.2921 35 1 3.4850 -2.1122 -2.8742 36 1 7.9094 -1.2661 -4.1989 37 1 3.4984 -2.6528 0.0049 38 1 5.0412 -1.7695 0.1033 39 1 3.6519 -1.5719 2.1969 40 1 3.9904 0.0019 1.4315 41 1 3.0033 -0.6908 4.7762 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947422264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:19 Heat of formation + Delta-G solvation = -97.820276 kcal Electronic energy + Delta-G solvation = -30379.480087 eV Core-core repulsion = 25462.868572 eV Total energy + Delta-G solvation = -4916.611515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.74179 -48.26730 -48.23119 -45.86887 -40.02428 -37.83435 -35.38595 -34.75134 -32.96113 -32.40973 -31.33095 -29.60548 -27.80031 -26.52673 -25.40441 -24.25553 -23.60600 -22.13132 -21.50265 -20.46634 -19.90682 -19.26870 -19.08321 -18.76126 -18.34127 -17.64426 -16.59632 -16.24922 -16.18765 -15.21562 -15.10481 -15.04118 -14.95664 -14.64530 -14.53605 -14.36054 -14.35374 -14.14927 -13.98878 -13.73920 -13.38868 -13.09893 -12.92189 -12.82455 -12.54245 -11.67340 -11.52936 -11.31580 -11.23319 -11.01538 -10.99795 -10.70656 -10.54995 -10.42505 -10.39596 -10.22676 -10.10735 -9.83830 -9.51714 -8.98763 -8.48441 -6.70498 -5.81515 -3.25718 0.18935 0.95462 1.65126 2.03631 2.69813 2.79668 2.81417 3.26775 3.35912 3.42432 3.42510 3.71415 3.98634 4.07903 4.41831 4.45398 4.53845 5.08206 5.14603 5.27435 5.36748 5.44338 5.65095 5.85576 6.00962 6.06908 6.23265 6.25782 6.32733 6.40317 6.52367 6.66635 6.68037 6.95657 7.02975 7.03518 7.28754 7.35770 7.63437 7.78212 7.82832 8.42273 9.17830 9.81132 10.37268 11.27211 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.025321 B = 0.002075 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.522616 B =13491.706765 C =13800.119924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.148 3.852 6 H 0.088 0.912 7 N -0.702 5.702 8 C 0.599 3.401 9 O -0.501 6.501 10 C -0.060 4.060 11 C -0.117 4.117 12 C -0.088 4.088 13 C 0.561 3.439 14 F -0.162 7.162 15 F -0.163 7.163 16 F -0.159 7.159 17 N -0.291 5.291 18 O 0.154 5.846 19 C -0.149 4.149 20 C 0.174 3.826 21 N -0.587 5.587 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.003 3.997 25 N -0.903 5.903 26 Si 0.901 3.099 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.199 0.801 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.512 -3.395 -20.145 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.175 4.175 5 C 0.046 3.954 6 H 0.106 0.894 7 N -0.351 5.351 8 C 0.380 3.620 9 O -0.376 6.376 10 C -0.125 4.125 11 C -0.139 4.139 12 C -0.246 4.246 13 C 0.506 3.494 14 F -0.143 7.143 15 F -0.144 7.144 16 F -0.140 7.140 17 N 0.018 4.982 18 O 0.068 5.932 19 C -0.189 4.189 20 C 0.048 3.952 21 N -0.311 5.311 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.195 4.195 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.216 0.784 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.558 -3.695 -20.391 22.058 hybrid contribution 0.059 -0.437 0.577 0.726 sum 7.616 -4.132 -19.814 21.626 Atomic orbital electron populations 1.21792 0.95628 1.01527 1.00393 1.20358 0.93193 0.93572 0.86483 0.95409 1.22420 0.93038 1.02051 1.00029 1.21279 0.94838 0.96886 0.82384 0.89368 1.46329 1.11971 1.47631 1.29198 1.16443 0.83185 0.81371 0.80977 1.90932 1.56348 1.36127 1.54202 1.24684 0.92954 0.97574 0.97327 1.22700 0.98731 0.99708 0.92789 1.23421 0.95277 1.04893 1.01002 1.16571 0.79725 0.74734 0.78377 1.93284 1.77034 1.54426 1.89596 1.93268 1.85660 1.93592 1.41881 1.93267 1.73552 1.51016 1.96201 1.73818 1.03446 1.15657 1.05237 1.85038 1.36456 1.45069 1.26598 1.22622 0.99922 0.99785 0.96585 1.20772 0.83254 0.97404 0.93782 1.44170 1.02984 1.64834 1.19076 1.19125 0.94821 1.38057 0.86233 0.91203 1.25094 0.97801 0.99648 0.97004 1.69988 1.23292 1.44385 1.17046 0.86394 0.79647 0.80131 0.80704 1.21067 1.21679 1.20900 0.92691 0.91814 0.94238 0.92373 0.91466 0.76196 0.78381 0.92310 0.92681 0.88956 0.96028 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.94 37.16 0.30 -2.03 16 2 C 0.17 3.22 3.50 -67.59 -0.24 2.98 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.14 -2.01 4.84 -26.61 -0.13 -2.14 16 5 C 0.15 2.25 2.42 -67.89 -0.16 2.09 16 6 H 0.09 1.49 7.57 -51.93 -0.39 1.09 16 7 N -0.70 -8.35 5.07 -54.82 -0.28 -8.63 16 8 C 0.60 7.51 7.78 -12.48 -0.10 7.41 16 9 O -0.50 -7.97 16.57 5.30 0.09 -7.88 16 10 C -0.06 -0.61 7.29 -36.31 -0.26 -0.88 16 11 C -0.12 -1.09 10.65 -38.95 -0.41 -1.50 16 12 C -0.09 -0.86 6.63 -82.17 -0.54 -1.41 16 13 C 0.56 5.04 3.56 36.01 0.13 5.16 16 14 F -0.16 -1.50 17.30 2.25 0.04 -1.46 16 15 F -0.16 -1.56 17.27 2.25 0.04 -1.52 16 16 F -0.16 -1.34 17.08 2.25 0.04 -1.30 16 17 N -0.29 -3.08 12.00 33.52 0.40 -2.68 16 18 O 0.15 1.50 11.04 15.56 0.17 1.68 16 19 C -0.15 -2.67 5.65 -26.61 -0.15 -2.82 16 20 C 0.17 3.93 5.29 -3.71 -0.02 3.91 16 21 N -0.59 -13.53 2.99 -164.77 -0.49 -14.02 16 22 C -0.25 -6.44 8.61 -15.06 -0.13 -6.57 16 23 H 0.07 1.73 6.20 -52.48 -0.33 1.40 16 24 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 25 N -0.90 -25.32 11.14 55.49 0.62 -24.70 16 26 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 30 H 0.05 0.95 7.40 -51.93 -0.38 0.56 16 31 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 3.72 8.43 -40.82 -0.34 3.37 16 36 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -28.79 357.16 -5.51 -34.30 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.68 Total: 0.69 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.81 Total: 4.23 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.25 Total: -50.03 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: 0.26 Total: -6.21 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.12 Total: -4.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.79 -5.51 -34.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947422264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.519 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds