Wall clock time and date at job start Wed Apr 1 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.08998 * 109.44839 * 301.21908 * 5 4 2 7 7 N 1.46509 * 109.45726 * 181.25630 * 5 4 2 8 8 C 1.34774 * 119.99718 * 154.93248 * 7 5 4 9 9 O 1.21613 * 120.00563 * 359.97438 * 8 7 5 10 10 C 1.47420 * 120.00182 * 180.02562 * 8 7 5 11 11 N 1.36072 * 126.44500 * 0.02562 * 10 8 7 12 12 C 1.29936 * 108.47849 * 179.97438 * 11 10 8 13 13 O 1.34054 * 109.24165 * 0.02562 * 12 11 10 14 14 C 1.34263 * 108.22739 * 359.76504 * 13 12 11 15 15 C 1.50699 * 126.52823 * 180.23090 * 14 13 12 16 16 F 1.39899 * 109.46907 * 270.16795 * 15 14 13 17 17 F 1.39907 * 109.47024 * 30.16098 * 15 14 13 18 18 F 1.39898 * 109.47314 * 150.16396 * 15 14 13 19 19 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 5 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99665 * 29.58632 * 22 21 2 24 24 C 1.38808 * 119.99877 * 209.58916 * 22 21 2 25 25 N 1.31618 * 120.00552 * 15.52077 * 24 22 21 26 26 Si 1.86804 * 119.99669 * 195.52646 * 24 22 21 27 27 H 1.48498 * 109.47155 * 180.02562 * 26 24 22 28 28 H 1.48506 * 109.46909 * 300.00011 * 26 24 22 29 29 H 1.48501 * 109.47361 * 59.99417 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 34 34 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 35 35 H 0.96997 * 120.00491 * 334.93339 * 7 5 4 36 36 H 1.07997 * 125.38275 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.49796 * 178.68040 * 19 5 4 38 38 H 1.08994 * 109.49791 * 58.58506 * 19 5 4 39 39 H 1.08998 * 109.58588 * 294.84653 * 20 19 5 40 40 H 1.08997 * 109.70252 * 174.49039 * 20 19 5 41 41 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0055 0.1478 -1.0995 7 7 4.0578 -1.5119 -2.3805 8 6 5.3217 -1.3001 -2.7977 9 8 6.0520 -0.5558 -2.1719 10 6 5.8187 -1.9697 -4.0134 11 7 5.1188 -2.8222 -4.8102 12 6 5.8913 -3.2054 -5.7821 13 8 7.0921 -2.6249 -5.6472 14 6 7.0622 -1.8478 -4.5527 15 6 8.1916 -1.0035 -4.0210 16 9 8.9577 -1.7591 -3.1269 17 9 8.9975 -0.5801 -5.0833 18 9 7.6681 0.1123 -3.3592 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3771 1.9102 24 6 1.5774 -1.1943 3.4879 25 7 2.6899 -0.5972 3.8596 26 14 0.5687 -2.1506 4.7359 27 1 1.2311 -2.0838 6.0633 28 1 -0.7904 -1.5597 4.8311 29 1 0.4631 -3.5679 4.3055 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7632 -0.1564 -2.1349 34 1 1.5964 -1.7169 -1.2937 35 1 3.4753 -2.1053 -2.8800 36 1 5.6108 -3.8850 -6.5732 37 1 5.0363 -1.7760 0.0965 38 1 3.4906 -2.6540 -0.0023 39 1 3.9928 -0.0049 1.4310 40 1 3.6506 -1.5776 2.1938 41 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947463229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:58 Heat of formation + Delta-G solvation = -128.867752 kcal Electronic energy + Delta-G solvation = -31475.197414 eV Core-core repulsion = 26557.239580 eV Total energy + Delta-G solvation = -4917.957834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.42839 -48.00609 -47.83022 -44.14375 -39.78896 -37.72524 -35.54865 -34.68653 -32.43350 -32.03779 -31.32194 -29.59363 -26.98420 -26.33098 -25.08189 -24.20219 -22.90976 -21.98048 -21.25611 -20.21843 -19.69376 -19.07983 -18.92728 -18.55462 -17.96378 -17.28661 -16.47860 -16.23785 -15.91620 -15.11671 -14.97490 -14.82591 -14.73934 -14.45905 -14.35999 -14.17791 -13.99639 -13.95503 -13.78285 -13.58836 -13.28671 -13.02594 -12.82450 -12.72868 -12.00216 -11.60487 -11.51623 -11.23234 -11.12649 -10.94314 -10.90065 -10.65865 -10.34804 -10.26639 -10.10441 -10.02848 -10.00037 -9.74866 -9.43339 -8.79282 -8.42312 -6.63254 -5.76383 -3.20620 0.16800 1.25536 1.48877 2.55319 2.88297 3.01925 3.27689 3.39074 3.45535 3.45810 3.47699 3.89213 3.96443 4.27814 4.49941 4.63481 4.82424 5.23067 5.35311 5.37289 5.43553 5.55288 5.75960 5.96259 6.15267 6.19306 6.31222 6.36307 6.41194 6.49147 6.61490 6.64273 6.77372 6.83923 7.02573 7.10000 7.37024 7.52593 7.69240 7.83404 8.11007 8.48098 9.23259 9.86770 10.43972 11.32516 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.002683 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.114169 B =10433.755750 C =10977.602966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.086 0.914 7 N -0.696 5.696 8 C 0.580 3.420 9 O -0.509 6.509 10 C 0.025 3.975 11 N -0.464 5.464 12 C 0.219 3.781 13 O -0.173 6.173 14 C -0.089 4.089 15 C 0.564 3.436 16 F -0.159 7.159 17 F -0.170 7.170 18 F -0.122 7.122 19 C -0.147 4.147 20 C 0.176 3.824 21 N -0.587 5.587 22 C -0.253 4.253 23 H 0.069 0.931 24 C 0.004 3.996 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.269 0.731 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.089 0.911 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -4.576 -21.998 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.105 0.895 7 N -0.345 5.345 8 C 0.362 3.638 9 O -0.384 6.384 10 C -0.097 4.097 11 N -0.193 5.193 12 C -0.008 4.008 13 O -0.058 6.058 14 C -0.147 4.147 15 C 0.509 3.491 16 F -0.140 7.140 17 F -0.151 7.151 18 F -0.102 7.102 19 C -0.188 4.188 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.217 1.217 28 H -0.209 1.209 29 H -0.211 1.211 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.239 0.761 36 H 0.285 0.715 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.107 0.893 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.554 -4.174 -21.241 22.927 hybrid contribution 0.069 -0.785 0.141 0.801 sum 7.623 -4.959 -21.100 22.976 Atomic orbital electron populations 1.21791 0.95696 1.01397 1.00397 1.20265 0.93144 0.93635 0.86527 0.95497 1.22327 0.93302 1.01893 0.99877 1.21209 0.94653 0.96885 0.82593 0.89546 1.46154 1.12030 1.47764 1.28602 1.16757 0.83340 0.81530 0.82126 1.90968 1.55774 1.36336 1.55315 1.22070 0.90346 0.98759 0.98541 1.70973 1.32119 1.11898 1.04271 1.28519 0.76862 0.96572 0.98873 1.84379 1.37406 1.46333 1.37700 1.23203 0.97897 1.01790 0.91801 1.16480 0.78495 0.78333 0.75829 1.93292 1.76086 1.76029 1.68589 1.93254 1.74790 1.90556 1.56511 1.93475 1.85669 1.51089 1.80005 1.22594 0.99879 0.99640 0.96665 1.20737 0.83317 0.97350 0.93669 1.44144 1.03017 1.64850 1.19054 1.19112 0.95089 1.37961 0.86141 0.91306 1.25100 0.97861 0.99511 0.96984 1.70007 1.23967 1.43726 1.16854 0.86409 0.79614 0.80216 0.80723 1.21684 1.20918 1.21085 0.91795 0.94293 0.92781 0.92496 0.91645 0.76054 0.71516 0.92745 0.92504 0.96004 0.89288 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.29 -2.15 16 2 C 0.17 3.44 3.48 -67.83 -0.24 3.21 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.21 4.81 -26.83 -0.13 -2.34 16 5 C 0.15 2.57 2.42 -67.88 -0.16 2.40 16 6 H 0.09 1.64 7.57 -51.93 -0.39 1.25 16 7 N -0.70 -10.16 5.07 -54.84 -0.28 -10.44 16 8 C 0.58 8.92 7.73 -12.52 -0.10 8.82 16 9 O -0.51 -9.25 12.81 5.27 0.07 -9.18 16 10 C 0.03 0.32 6.96 -83.02 -0.58 -0.26 16 11 N -0.46 -4.63 11.06 -11.48 -0.13 -4.76 16 12 C 0.22 1.35 13.19 51.96 0.69 2.04 16 13 O -0.17 -1.49 10.72 6.49 0.07 -1.43 16 14 C -0.09 -1.04 6.75 -35.08 -0.24 -1.27 16 15 C 0.56 6.95 3.34 36.01 0.12 7.07 16 16 F -0.16 -2.04 17.30 2.25 0.04 -2.00 16 17 F -0.17 -1.88 17.30 2.25 0.04 -1.84 16 18 F -0.12 -1.77 13.49 2.25 0.03 -1.74 16 19 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 20 C 0.18 4.19 5.29 -3.71 -0.02 4.17 16 21 N -0.59 -14.22 2.99 -165.03 -0.49 -14.71 16 22 C -0.25 -6.69 8.57 -15.06 -0.13 -6.82 16 23 H 0.07 1.76 6.23 -52.49 -0.33 1.43 16 24 C 0.00 0.12 4.94 -17.43 -0.09 0.03 16 25 N -0.90 -26.01 11.23 55.49 0.62 -25.38 16 26 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 5.09 8.33 -40.82 -0.34 4.75 16 36 H 0.27 -0.02 8.06 -52.49 -0.42 -0.44 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -31.78 350.65 -5.18 -36.96 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.68 Total: 0.97 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -0.72 Total: 11.85 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.28 Total: -55.29 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.14 Total: -10.61 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.11 Total: -5.58 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.78 -5.18 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947463229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.910 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds