Wall clock time and date at job start Wed Apr 1 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.08998 * 109.44839 * 301.21908 * 5 4 2 7 7 N 1.46509 * 109.45726 * 181.25630 * 5 4 2 8 8 C 1.34774 * 119.99718 * 154.93248 * 7 5 4 9 9 O 1.21613 * 120.00563 * 359.97438 * 8 7 5 10 10 C 1.47420 * 120.00182 * 180.02562 * 8 7 5 11 11 N 1.36072 * 126.44500 * 0.02562 * 10 8 7 12 12 C 1.29936 * 108.47849 * 179.97438 * 11 10 8 13 13 O 1.34054 * 109.24165 * 0.02562 * 12 11 10 14 14 C 1.34263 * 108.22739 * 359.76504 * 13 12 11 15 15 C 1.50699 * 126.52823 * 180.23090 * 14 13 12 16 16 F 1.39899 * 109.46907 * 270.16795 * 15 14 13 17 17 F 1.39907 * 109.47024 * 30.16098 * 15 14 13 18 18 F 1.39898 * 109.47314 * 150.16396 * 15 14 13 19 19 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 5 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99665 * 29.58632 * 22 21 2 24 24 C 1.38808 * 119.99877 * 209.58916 * 22 21 2 25 25 N 1.31618 * 120.00552 * 15.52077 * 24 22 21 26 26 Si 1.86804 * 119.99669 * 195.52646 * 24 22 21 27 27 H 1.48498 * 109.47155 * 180.02562 * 26 24 22 28 28 H 1.48506 * 109.46909 * 300.00011 * 26 24 22 29 29 H 1.48501 * 109.47361 * 59.99417 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 34 34 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 35 35 H 0.96997 * 120.00491 * 334.93339 * 7 5 4 36 36 H 1.07997 * 125.38275 * 179.97438 * 12 11 10 37 37 H 1.08996 * 109.49796 * 178.68040 * 19 5 4 38 38 H 1.08994 * 109.49791 * 58.58506 * 19 5 4 39 39 H 1.08998 * 109.58588 * 294.84653 * 20 19 5 40 40 H 1.08997 * 109.70252 * 174.49039 * 20 19 5 41 41 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 4.0055 0.1478 -1.0995 7 7 4.0578 -1.5119 -2.3805 8 6 5.3217 -1.3001 -2.7977 9 8 6.0520 -0.5558 -2.1719 10 6 5.8187 -1.9697 -4.0134 11 7 5.1188 -2.8222 -4.8102 12 6 5.8913 -3.2054 -5.7821 13 8 7.0921 -2.6249 -5.6472 14 6 7.0622 -1.8478 -4.5527 15 6 8.1916 -1.0035 -4.0210 16 9 8.9577 -1.7591 -3.1269 17 9 8.9975 -0.5801 -5.0833 18 9 7.6681 0.1123 -3.3592 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3771 1.9102 24 6 1.5774 -1.1943 3.4879 25 7 2.6899 -0.5972 3.8596 26 14 0.5687 -2.1506 4.7359 27 1 1.2311 -2.0838 6.0633 28 1 -0.7904 -1.5597 4.8311 29 1 0.4631 -3.5679 4.3055 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7632 -0.1564 -2.1349 34 1 1.5964 -1.7169 -1.2937 35 1 3.4753 -2.1053 -2.8800 36 1 5.6108 -3.8850 -6.5732 37 1 5.0363 -1.7760 0.0965 38 1 3.4906 -2.6540 -0.0023 39 1 3.9928 -0.0049 1.4310 40 1 3.6506 -1.5776 2.1938 41 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947463229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:57 Heat of formation + Delta-G solvation = -152.650961 kcal Electronic energy + Delta-G solvation = -31476.228731 eV Core-core repulsion = 26557.239580 eV Total energy + Delta-G solvation = -4918.989152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.39616 -48.94761 -48.85031 -44.86477 -41.08014 -39.30490 -36.36455 -36.16092 -34.23224 -33.06508 -32.75811 -31.32444 -28.23603 -27.65817 -26.68096 -25.31942 -23.94854 -23.46035 -22.49009 -21.59514 -21.11369 -20.23078 -19.87338 -19.53012 -18.99033 -18.21922 -18.02807 -17.38105 -17.12789 -16.75468 -16.14640 -15.82325 -15.75789 -15.73552 -15.55805 -15.35921 -15.34237 -15.20059 -14.99502 -14.91645 -14.75207 -14.53979 -14.35773 -13.91319 -13.32687 -12.94786 -12.81343 -12.72351 -12.65861 -12.61445 -12.36263 -12.24438 -12.11939 -11.87845 -11.71953 -11.53364 -11.50894 -11.11070 -10.81635 -10.53349 -10.11980 -8.62982 -7.82512 -5.29043 -0.68692 0.45493 0.80555 1.48859 1.51028 1.57408 1.66716 1.81760 1.92335 2.44636 2.54173 2.76207 2.97894 3.00263 3.32345 3.36778 3.60659 3.77276 3.86253 4.03272 4.11813 4.25958 4.38233 4.61586 4.69807 4.75452 4.78477 4.85587 4.95353 5.05333 5.06767 5.15750 5.37299 5.40643 5.52426 5.56973 5.71961 5.74575 5.95039 6.37582 6.44790 6.95532 7.18739 7.90363 8.43357 9.25038 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019211 B = 0.002683 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.114169 B =10433.755750 C =10977.602966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.013 0.987 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.066 0.934 7 N -0.685 5.685 8 C 0.577 3.423 9 O -0.544 6.544 10 C 0.014 3.986 11 N -0.488 5.488 12 C 0.257 3.743 13 O -0.167 6.167 14 C -0.095 4.095 15 C 0.562 3.438 16 F -0.166 7.166 17 F -0.163 7.163 18 F -0.140 7.140 19 C -0.131 4.131 20 C 0.184 3.816 21 N -0.603 5.603 22 C -0.251 4.251 23 H 0.080 0.920 24 C -0.055 4.055 25 N -0.940 5.940 26 Si 0.963 3.037 27 H -0.300 1.300 28 H -0.274 1.274 29 H -0.278 1.278 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.418 0.582 36 H 0.331 0.669 37 H 0.047 0.953 38 H 0.061 0.939 39 H -0.010 1.010 40 H 0.054 0.946 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.115 -6.425 -25.451 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.084 0.916 7 N -0.335 5.335 8 C 0.361 3.639 9 O -0.422 6.422 10 C -0.108 4.108 11 N -0.216 5.216 12 C 0.031 3.969 13 O -0.054 6.054 14 C -0.154 4.154 15 C 0.507 3.493 16 F -0.147 7.147 17 F -0.144 7.144 18 F -0.120 7.120 19 C -0.171 4.171 20 C 0.058 3.942 21 N -0.327 5.327 22 C -0.381 4.381 23 H 0.098 0.902 24 C -0.249 4.249 25 N -0.586 5.586 26 Si 0.792 3.208 27 H -0.227 1.227 28 H -0.199 1.199 29 H -0.204 1.204 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.256 0.744 36 H 0.345 0.655 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.008 0.992 40 H 0.073 0.927 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.064 -6.044 -24.749 26.188 hybrid contribution 0.548 -0.212 1.076 1.226 sum 6.612 -6.256 -23.673 25.363 Atomic orbital electron populations 1.21709 0.93809 1.01730 1.01166 1.20543 0.94780 0.92982 0.86302 0.96918 1.22129 0.92076 1.02462 0.99082 1.20833 0.95392 0.95484 0.82607 0.91600 1.45845 1.12238 1.47757 1.27641 1.17122 0.82987 0.81042 0.82755 1.90957 1.56609 1.37855 1.56729 1.21594 0.91082 0.99913 0.98206 1.70972 1.32799 1.12518 1.05340 1.29961 0.74839 0.94178 0.97932 1.84428 1.38573 1.45966 1.36406 1.22867 0.97101 1.02546 0.92873 1.16550 0.78896 0.78064 0.75788 1.93273 1.76353 1.76073 1.68979 1.93262 1.74658 1.90513 1.55952 1.93435 1.85961 1.52130 1.80520 1.22323 0.99236 0.99580 0.95991 1.20430 0.83726 0.95546 0.94536 1.44406 1.02671 1.65571 1.20057 1.19509 0.95616 1.36423 0.86568 0.90249 1.25866 0.99111 1.00979 0.98993 1.70187 1.25979 1.45858 1.16619 0.85402 0.78347 0.79109 0.77959 1.22692 1.19935 1.20359 0.94131 0.90420 0.92595 0.89102 0.90574 0.74427 0.65506 0.93449 0.92004 0.99162 0.92726 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.94 71.98 0.57 -3.75 16 2 C 0.16 6.29 3.48 44.83 0.16 6.45 16 3 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.12 -3.62 4.81 30.53 0.15 -3.47 16 5 C 0.16 5.45 2.42 45.02 0.11 5.56 16 6 H 0.07 2.55 7.57 -2.39 -0.02 2.53 16 7 N -0.68 -19.02 5.07 -445.66 -2.26 -21.28 16 8 C 0.58 17.44 7.73 86.66 0.67 18.11 16 9 O -0.54 -20.27 12.81 -4.07 -0.05 -20.32 16 10 C 0.01 0.33 6.96 40.41 0.28 0.61 16 11 N -0.49 -8.10 11.06 -305.14 -3.37 -11.47 16 12 C 0.26 1.95 13.19 130.52 1.72 3.67 16 13 O -0.17 -2.34 10.72 0.29 0.00 -2.34 16 14 C -0.10 -2.07 6.75 25.19 0.17 -1.90 16 15 C 0.56 13.75 3.34 71.24 0.24 13.99 16 16 F -0.17 -4.28 17.30 44.97 0.78 -3.50 16 17 F -0.16 -3.48 17.30 44.97 0.78 -2.70 16 18 F -0.14 -4.19 13.49 44.97 0.61 -3.58 16 19 C -0.13 -5.26 5.65 30.67 0.17 -5.08 16 20 C 0.18 9.24 5.29 86.36 0.46 9.69 16 21 N -0.60 -29.68 2.99 -676.05 -2.02 -31.71 16 22 C -0.25 -13.35 8.57 84.03 0.72 -12.63 16 23 H 0.08 4.00 6.23 -2.91 -0.02 3.98 16 24 C -0.05 -3.05 4.94 84.86 0.42 -2.63 16 25 N -0.94 -56.68 11.23 21.65 0.24 -56.43 16 26 Si 0.96 44.82 29.58 68.60 2.03 46.85 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 30 H 0.04 1.55 7.62 -2.39 -0.02 1.53 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.88 7.44 -2.39 -0.02 1.86 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 35 H 0.42 9.42 8.33 -92.71 -0.77 8.65 16 36 H 0.33 -2.34 8.06 -2.91 -0.02 -2.37 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.05 3.09 6.14 -2.39 -0.01 3.08 16 41 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -73.82 350.65 2.89 -70.92 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.33 Total: 6.95 kcal Atomic # 6 Polarization: 22.78 SS G_CDS: 5.83 Total: 28.61 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -7.41 Total: -120.89 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 9 Polarization: -11.95 SS G_CDS: 2.16 Total: -9.79 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.82 2.89 -70.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947463229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.726 kcal (2) G-P(sol) polarization free energy of solvation -73.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds