Wall clock time and date at job start Wed Apr 1 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58176 * 2 1 4 4 C 1.53187 * 109.70631 * 239.64261 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.77963 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46499 * 109.45791 * 178.61385 * 5 4 2 8 8 C 1.34781 * 119.99985 * 204.99746 * 7 5 4 9 9 O 1.21608 * 119.99838 * 359.97438 * 8 7 5 10 10 C 1.47419 * 119.99886 * 179.97438 * 8 7 5 11 11 C 1.36096 * 126.44390 * 179.71211 * 10 8 7 12 12 O 1.34262 * 106.94343 * 179.84722 * 11 10 8 13 13 C 1.34052 * 108.22955 * 0.42162 * 12 11 10 14 14 C 1.50694 * 125.37540 * 179.69863 * 13 12 11 15 15 F 1.39909 * 109.47122 * 270.04025 * 14 13 12 16 16 F 1.39894 * 109.47700 * 30.04194 * 14 13 12 17 17 F 1.39905 * 109.47137 * 150.04480 * 14 13 12 18 18 N 1.29937 * 109.24050 * 359.73473 * 13 12 11 19 19 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 20 20 C 1.52755 * 109.38132 * 61.24392 * 19 5 4 21 21 N 1.46923 * 109.00900 * 305.58408 * 20 19 5 22 22 C 1.36943 * 120.62930 * 233.58508 * 21 20 19 23 23 H 1.08004 * 119.99729 * 152.16663 * 22 21 20 24 24 C 1.38806 * 119.99865 * 332.16538 * 22 21 20 25 25 N 1.31614 * 120.00503 * 342.77410 * 24 22 21 26 26 Si 1.86807 * 119.99640 * 162.77186 * 24 22 21 27 27 H 1.48505 * 109.47082 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47280 * 300.00267 * 26 24 22 29 29 H 1.48498 * 109.46916 * 60.00563 * 26 24 22 30 30 H 1.09006 * 109.47413 * 299.71489 * 1 2 3 31 31 H 1.08996 * 109.47336 * 59.71776 * 1 2 3 32 32 H 1.09006 * 109.47238 * 179.72000 * 1 2 3 33 33 H 1.09004 * 109.49624 * 54.72651 * 4 2 1 34 34 H 1.08999 * 109.49918 * 174.82652 * 4 2 1 35 35 H 0.97006 * 120.00167 * 24.99764 * 7 5 4 36 36 H 1.07997 * 126.52852 * 0.02562 * 11 10 8 37 37 H 1.09007 * 109.49256 * 181.31765 * 19 5 4 38 38 H 1.09002 * 109.49531 * 301.41463 * 19 5 4 39 39 H 1.09005 * 109.50719 * 185.70148 * 20 19 5 40 40 H 1.09006 * 109.43430 * 65.42411 * 20 19 5 41 41 H 0.97004 * 120.00231 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5624 -2.2840 -1.0994 7 7 2.1111 -2.8976 -2.3734 8 6 1.4866 -4.0174 -2.7890 9 8 0.5384 -4.4524 -2.1641 10 6 1.9529 -4.7146 -4.0013 11 6 1.4264 -5.8513 -4.5332 12 8 2.1449 -6.1392 -5.6302 13 6 3.0976 -5.2058 -5.7645 14 6 4.1263 -5.1612 -6.8648 15 9 5.2620 -5.8771 -6.4708 16 9 3.5936 -5.7334 -8.0249 17 9 4.4786 -3.8315 -7.1201 18 7 2.9944 -4.3462 -4.7956 19 6 2.2858 -2.8448 0.0657 20 6 1.7768 -2.1410 1.3223 21 7 2.0225 -0.6980 1.1954 22 6 2.7026 -0.0177 2.1700 23 1 3.2649 0.8692 1.9173 24 6 2.6694 -0.4679 3.4826 25 7 1.7412 -1.3200 3.8628 26 14 3.9422 0.1357 4.7095 27 1 3.6896 -0.4894 6.0327 28 1 5.3002 -0.2357 4.2372 29 1 3.8480 1.6124 4.8343 30 1 -0.3634 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0050 33 1 1.6106 -0.2792 -2.1366 34 1 3.1326 -0.6476 -1.2891 35 1 2.8676 -2.5508 -2.8717 36 1 0.5883 -6.4130 -4.1480 37 1 2.0201 -3.9012 0.1060 38 1 3.3696 -2.7436 0.0086 39 1 2.3050 -2.5263 2.1945 40 1 0.7073 -2.3214 1.4311 41 1 1.7182 -1.6349 4.7800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947502382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:03 Heat of formation + Delta-G solvation = -134.298460 kcal Electronic energy + Delta-G solvation = -30652.860308 eV Core-core repulsion = 25734.666980 eV Total energy + Delta-G solvation = -4918.193328 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 6.35 seconds Orbital eigenvalues (eV) -50.88741 -48.41709 -48.37820 -44.23413 -39.82073 -37.82052 -35.69107 -34.58764 -32.56174 -31.99306 -30.83275 -29.58218 -27.41285 -26.98531 -25.09846 -24.02481 -22.79837 -22.00816 -21.77963 -20.73140 -19.61566 -19.36572 -19.06021 -18.40654 -17.71905 -17.39406 -17.03423 -16.55517 -15.99898 -15.20197 -15.16710 -14.84723 -14.78505 -14.76592 -14.48794 -14.48115 -14.46264 -14.09558 -13.78890 -13.75049 -13.46441 -13.09591 -12.73436 -12.53884 -12.25593 -12.10270 -11.69454 -11.43614 -11.09817 -10.96548 -10.83103 -10.65057 -10.39199 -10.29300 -10.22052 -9.98141 -9.95920 -9.73923 -9.41602 -8.81538 -8.42615 -6.70359 -5.79235 -3.21614 0.32299 0.96845 1.16252 2.08537 2.64296 3.01519 3.05807 3.38447 3.44570 3.45449 3.49106 3.54541 4.03290 4.27469 4.48353 4.59196 4.88684 5.12441 5.27078 5.36471 5.39559 5.55239 5.75518 5.97892 6.04276 6.21395 6.26082 6.37494 6.41310 6.49425 6.56982 6.62165 6.75495 6.82222 6.92268 7.13909 7.36430 7.53370 7.67845 7.79346 8.11359 8.44747 9.20627 9.84039 10.40338 11.29168 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.147137 B =12154.173660 C =12521.147518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.701 5.701 8 C 0.597 3.403 9 O -0.529 6.529 10 C -0.062 4.062 11 C 0.054 3.946 12 O -0.168 6.168 13 C 0.090 3.910 14 C 0.588 3.412 15 F -0.152 7.152 16 F -0.156 7.156 17 F -0.141 7.141 18 N -0.388 5.388 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.291 1.291 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.841 -9.249 -22.637 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.350 5.350 8 C 0.380 3.620 9 O -0.406 6.406 10 C -0.185 4.185 11 C -0.021 4.021 12 O -0.052 6.052 13 C -0.120 4.120 14 C 0.532 3.468 15 F -0.133 7.133 16 F -0.137 7.137 17 F -0.122 7.122 18 N -0.120 5.120 19 C -0.188 4.188 20 C 0.048 3.952 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.217 1.217 28 H -0.211 1.211 29 H -0.209 1.209 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.575 -9.096 -21.960 23.821 hybrid contribution 0.669 -0.225 0.226 0.741 sum 2.243 -9.321 -21.733 23.754 Atomic orbital electron populations 1.22306 0.98646 1.01094 1.00149 1.20432 0.91810 0.95164 0.86357 0.91542 1.22317 1.01431 0.93789 0.99763 1.21253 0.99964 0.91558 0.82697 0.89297 1.46208 1.34178 1.25689 1.28886 1.16590 0.82813 0.81045 0.81535 1.90872 1.27814 1.66060 1.55816 1.22234 0.96911 0.98636 1.00687 1.25797 0.96102 0.96541 0.83616 1.84405 1.35445 1.45338 1.39975 1.25432 0.96027 0.90007 1.00531 1.15954 0.77782 0.75260 0.77816 1.93334 1.51397 1.78016 1.90587 1.93304 1.85968 1.84652 1.49797 1.93336 1.91850 1.33226 1.93776 1.70664 1.15855 1.24080 1.01445 1.22527 1.00381 0.99187 0.96699 1.20655 0.97822 0.82931 0.93821 1.44143 1.64004 1.03299 1.19180 1.19123 1.22370 1.10108 0.86764 0.91676 1.25035 0.97708 0.99947 0.96779 1.70022 1.31900 1.35461 1.17049 0.86387 0.81655 0.78345 0.80464 1.21681 1.21056 1.20909 0.92533 0.94461 0.93225 0.92422 0.91669 0.76090 0.73542 0.92811 0.92508 0.89217 0.96027 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.04 37.16 0.34 -2.71 16 2 C 0.17 3.37 3.28 -67.60 -0.22 3.15 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.18 5.03 -26.61 -0.13 -2.32 16 5 C 0.15 2.50 2.21 -67.88 -0.15 2.35 16 6 H 0.09 1.65 5.94 -51.93 -0.31 1.34 16 7 N -0.70 -10.07 5.07 -54.84 -0.28 -10.35 16 8 C 0.60 8.60 7.78 -12.52 -0.10 8.51 16 9 O -0.53 -9.03 16.55 5.27 0.09 -8.94 16 10 C -0.06 -0.72 6.99 -83.02 -0.58 -1.30 16 11 C 0.05 0.45 11.95 29.96 0.36 0.81 16 12 O -0.17 -1.45 10.70 6.49 0.07 -1.39 16 13 C 0.09 0.87 7.53 -13.08 -0.10 0.77 16 14 C 0.59 4.77 3.57 36.00 0.13 4.90 16 15 F -0.15 -1.26 17.30 2.25 0.04 -1.22 16 16 F -0.16 -1.17 17.28 2.25 0.04 -1.13 16 17 F -0.14 -1.22 17.23 2.25 0.04 -1.18 16 18 N -0.39 -4.41 10.96 -7.66 -0.08 -4.50 16 19 C -0.15 -2.87 5.63 -26.83 -0.15 -3.02 16 20 C 0.17 4.09 4.87 -3.94 -0.02 4.07 16 21 N -0.58 -14.02 2.71 -165.04 -0.45 -14.47 16 22 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 23 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 24 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 25 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 26 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.96 5.76 -51.93 -0.30 0.66 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.40 5.16 8.33 -40.82 -0.34 4.82 16 36 H 0.25 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 40 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -30.33 356.91 -5.00 -35.33 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.57 Total: 2.87 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -0.86 Total: 8.33 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.19 Total: -54.45 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.16 Total: -10.33 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.12 Total: -3.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.33 -5.00 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947502382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.968 kcal (2) G-P(sol) polarization free energy of solvation -30.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.35 seconds