Wall clock time and date at job start Wed Apr 1 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58176 * 2 1 4 4 C 1.53187 * 109.70631 * 239.64261 * 2 1 3 5 5 C 1.53046 * 109.31183 * 294.77963 * 4 2 1 6 6 H 1.08998 * 109.46221 * 58.65177 * 5 4 2 7 7 N 1.46499 * 109.45791 * 178.61385 * 5 4 2 8 8 C 1.34781 * 119.99985 * 204.99746 * 7 5 4 9 9 O 1.21608 * 119.99838 * 359.97438 * 8 7 5 10 10 C 1.47419 * 119.99886 * 179.97438 * 8 7 5 11 11 C 1.36096 * 126.44390 * 179.71211 * 10 8 7 12 12 O 1.34262 * 106.94343 * 179.84722 * 11 10 8 13 13 C 1.34052 * 108.22955 * 0.42162 * 12 11 10 14 14 C 1.50694 * 125.37540 * 179.69863 * 13 12 11 15 15 F 1.39909 * 109.47122 * 270.04025 * 14 13 12 16 16 F 1.39894 * 109.47700 * 30.04194 * 14 13 12 17 17 F 1.39905 * 109.47137 * 150.04480 * 14 13 12 18 18 N 1.29937 * 109.24050 * 359.73473 * 13 12 11 19 19 C 1.53044 * 109.53404 * 298.63052 * 5 4 2 20 20 C 1.52755 * 109.38132 * 61.24392 * 19 5 4 21 21 N 1.46923 * 109.00900 * 305.58408 * 20 19 5 22 22 C 1.36943 * 120.62930 * 233.58508 * 21 20 19 23 23 H 1.08004 * 119.99729 * 152.16663 * 22 21 20 24 24 C 1.38806 * 119.99865 * 332.16538 * 22 21 20 25 25 N 1.31614 * 120.00503 * 342.77410 * 24 22 21 26 26 Si 1.86807 * 119.99640 * 162.77186 * 24 22 21 27 27 H 1.48505 * 109.47082 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47280 * 300.00267 * 26 24 22 29 29 H 1.48498 * 109.46916 * 60.00563 * 26 24 22 30 30 H 1.09006 * 109.47413 * 299.71489 * 1 2 3 31 31 H 1.08996 * 109.47336 * 59.71776 * 1 2 3 32 32 H 1.09006 * 109.47238 * 179.72000 * 1 2 3 33 33 H 1.09004 * 109.49624 * 54.72651 * 4 2 1 34 34 H 1.08999 * 109.49918 * 174.82652 * 4 2 1 35 35 H 0.97006 * 120.00167 * 24.99764 * 7 5 4 36 36 H 1.07997 * 126.52852 * 0.02562 * 11 10 8 37 37 H 1.09007 * 109.49256 * 181.31765 * 19 5 4 38 38 H 1.09002 * 109.49531 * 301.41463 * 19 5 4 39 39 H 1.09005 * 109.50719 * 185.70148 * 20 19 5 40 40 H 1.09006 * 109.43430 * 65.42411 * 20 19 5 41 41 H 0.97004 * 120.00231 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2444 5 6 1.6473 -2.2044 -1.1690 6 1 0.5624 -2.2840 -1.0994 7 7 2.1111 -2.8976 -2.3734 8 6 1.4866 -4.0174 -2.7890 9 8 0.5384 -4.4524 -2.1641 10 6 1.9529 -4.7146 -4.0013 11 6 1.4264 -5.8513 -4.5332 12 8 2.1449 -6.1392 -5.6302 13 6 3.0976 -5.2058 -5.7645 14 6 4.1263 -5.1612 -6.8648 15 9 5.2620 -5.8771 -6.4708 16 9 3.5936 -5.7334 -8.0249 17 9 4.4786 -3.8315 -7.1201 18 7 2.9944 -4.3462 -4.7956 19 6 2.2858 -2.8448 0.0657 20 6 1.7768 -2.1410 1.3223 21 7 2.0225 -0.6980 1.1954 22 6 2.7026 -0.0177 2.1700 23 1 3.2649 0.8692 1.9173 24 6 2.6694 -0.4679 3.4826 25 7 1.7412 -1.3200 3.8628 26 14 3.9422 0.1357 4.7095 27 1 3.6896 -0.4894 6.0327 28 1 5.3002 -0.2357 4.2372 29 1 3.8480 1.6124 4.8343 30 1 -0.3634 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3634 -1.0277 -0.0050 33 1 1.6106 -0.2792 -2.1366 34 1 3.1326 -0.6476 -1.2891 35 1 2.8676 -2.5508 -2.8717 36 1 0.5883 -6.4130 -4.1480 37 1 2.0201 -3.9012 0.1060 38 1 3.3696 -2.7436 0.0086 39 1 2.3050 -2.5263 2.1945 40 1 0.7073 -2.3214 1.4311 41 1 1.7182 -1.6349 4.7800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947502382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:02 Heat of formation + Delta-G solvation = -156.002564 kcal Electronic energy + Delta-G solvation = -30653.801468 eV Core-core repulsion = 25734.666980 eV Total energy + Delta-G solvation = -4919.134488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.52243 -49.03542 -49.02632 -44.98622 -41.07475 -39.34560 -36.50805 -36.07871 -34.31026 -32.86626 -32.41437 -31.29359 -28.64668 -28.07184 -26.43450 -25.51785 -23.77199 -23.53040 -23.05421 -21.87278 -20.64033 -20.00924 -19.89703 -19.66281 -18.88808 -18.41888 -18.12578 -17.56910 -17.40273 -16.63263 -16.05532 -15.86336 -15.80163 -15.72329 -15.51032 -15.39585 -15.26848 -15.12039 -15.11531 -15.10830 -14.63478 -14.34301 -14.16887 -14.13442 -13.89585 -13.14956 -12.99679 -12.90377 -12.62766 -12.56272 -12.47577 -12.31307 -12.06184 -12.03865 -11.81529 -11.50849 -11.44897 -11.02268 -10.76020 -10.54048 -10.07949 -8.67615 -7.84921 -5.29227 -0.38946 0.28479 0.29101 1.37414 1.48220 1.50475 1.56836 1.88481 1.99728 2.05740 2.52835 2.84929 2.90452 3.17596 3.30776 3.41325 3.63557 3.80762 3.85830 4.05791 4.24120 4.27326 4.34853 4.43992 4.51556 4.71372 4.75498 4.85626 4.87143 5.06495 5.10645 5.17258 5.33389 5.41393 5.45565 5.55699 5.69434 5.72991 5.77446 6.40629 6.42268 6.99779 7.17319 7.89255 8.40759 9.21636 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018977 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.147137 B =12154.173660 C =12521.147518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.075 0.925 7 N -0.696 5.696 8 C 0.600 3.400 9 O -0.560 6.560 10 C -0.094 4.094 11 C 0.088 3.912 12 O -0.161 6.161 13 C 0.090 3.910 14 C 0.597 3.403 15 F -0.152 7.152 16 F -0.150 7.150 17 F -0.143 7.143 18 N -0.404 5.404 19 C -0.133 4.133 20 C 0.185 3.815 21 N -0.600 5.600 22 C -0.259 4.259 23 H 0.070 0.930 24 C -0.050 4.050 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.298 1.298 28 H -0.279 1.279 29 H -0.275 1.275 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.282 0.718 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.053 0.947 40 H -0.004 1.004 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -9.317 -25.172 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.087 0.913 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.093 0.907 7 N -0.345 5.345 8 C 0.386 3.614 9 O -0.439 6.439 10 C -0.215 4.215 11 C 0.014 3.986 12 O -0.044 6.044 13 C -0.120 4.120 14 C 0.540 3.460 15 F -0.133 7.133 16 F -0.131 7.131 17 F -0.124 7.124 18 N -0.136 5.136 19 C -0.174 4.174 20 C 0.059 3.941 21 N -0.322 5.322 22 C -0.390 4.390 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.580 5.580 26 Si 0.792 3.208 27 H -0.224 1.224 28 H -0.205 1.205 29 H -0.201 1.201 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.251 0.749 36 H 0.298 0.702 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.215 -9.141 -24.552 26.292 hybrid contribution 0.441 -0.234 0.933 1.058 sum 2.655 -9.375 -23.619 25.550 Atomic orbital electron populations 1.22182 0.97866 1.00533 1.00634 1.20684 0.92418 0.95420 0.86025 0.91296 1.22151 1.01808 0.92866 0.99104 1.20870 0.98835 0.92017 0.82588 0.90670 1.45960 1.34623 1.25867 1.28035 1.16837 0.82087 0.80559 0.81953 1.90858 1.29158 1.66787 1.57093 1.21834 0.98640 1.00250 1.00793 1.26432 0.95210 0.94891 0.82095 1.84458 1.35166 1.44903 1.39862 1.25614 0.96256 0.89770 1.00400 1.15776 0.77437 0.75137 0.77607 1.93337 1.51365 1.78007 1.90618 1.93320 1.85883 1.84536 1.49372 1.93333 1.91840 1.33507 1.93763 1.70579 1.16102 1.24900 1.01979 1.22282 1.00213 0.98646 0.96224 1.20334 0.95778 0.83532 0.94503 1.44353 1.64375 1.03540 1.19964 1.19485 1.22073 1.09949 0.87445 0.91221 1.25763 0.99493 1.00730 0.98587 1.70185 1.33726 1.37214 1.16917 0.85395 0.79447 0.78012 0.77908 1.22420 1.20512 1.20077 0.95171 0.90695 0.94334 0.89067 0.91162 0.74880 0.70228 0.93143 0.92529 0.92828 0.98634 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.04 71.98 0.65 -4.97 16 2 C 0.16 6.22 3.28 44.97 0.15 6.37 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 4 C -0.12 -3.66 5.03 30.67 0.15 -3.51 16 5 C 0.16 5.27 2.21 45.02 0.10 5.37 16 6 H 0.08 2.73 5.94 -2.39 -0.01 2.72 16 7 N -0.70 -18.83 5.07 -445.66 -2.26 -21.09 16 8 C 0.60 16.42 7.78 86.66 0.67 17.10 16 9 O -0.56 -18.61 16.55 -4.05 -0.07 -18.67 16 10 C -0.09 -1.96 6.99 40.41 0.28 -1.68 16 11 C 0.09 1.23 11.95 67.32 0.80 2.04 16 12 O -0.16 -2.31 10.70 0.32 0.00 -2.31 16 13 C 0.09 1.53 7.53 88.39 0.67 2.19 16 14 C 0.60 8.47 3.57 71.23 0.25 8.72 16 15 F -0.15 -2.23 17.30 44.97 0.78 -1.45 16 16 F -0.15 -1.92 17.28 44.97 0.78 -1.14 16 17 F -0.14 -2.22 17.23 44.97 0.78 -1.44 16 18 N -0.40 -8.34 10.96 -293.04 -3.21 -11.55 16 19 C -0.13 -5.23 5.63 30.53 0.17 -5.06 16 20 C 0.19 9.03 4.87 86.22 0.42 9.45 16 21 N -0.60 -29.17 2.71 -676.06 -1.83 -31.00 16 22 C -0.26 -13.96 9.58 84.03 0.81 -13.16 16 23 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 24 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 25 N -0.93 -55.52 11.19 21.65 0.24 -55.28 16 26 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 30 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.04 1.48 5.76 -2.38 -0.01 1.47 16 33 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.41 9.67 8.33 -92.70 -0.77 8.90 16 36 H 0.28 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.05 2.99 6.04 -2.38 -0.01 2.97 16 40 H 0.00 -0.23 7.52 -2.38 -0.02 -0.25 16 41 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -67.43 356.91 3.12 -64.31 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.34 Total: 12.33 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: 5.55 Total: 20.48 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -7.06 Total: -118.92 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.98 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 2.33 Total: -4.03 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -67.43 3.12 -64.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947502382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.690 kcal (2) G-P(sol) polarization free energy of solvation -67.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds