Wall clock time and date at job start Wed Apr 1 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.57995 * 2 1 4 4 C 1.53192 * 109.70209 * 120.35530 * 2 1 3 5 5 C 1.53036 * 109.31632 * 65.22311 * 4 2 1 6 6 H 1.08999 * 109.44576 * 301.34888 * 5 4 2 7 7 N 1.46497 * 109.45834 * 181.38394 * 5 4 2 8 8 C 1.34779 * 119.99921 * 154.93404 * 7 5 4 9 9 O 1.21618 * 119.99883 * 359.97438 * 8 7 5 10 10 C 1.47416 * 120.00220 * 180.27368 * 8 7 5 11 11 C 1.36092 * 126.45190 * 179.43782 * 10 8 7 12 12 O 1.34252 * 106.94944 * 179.90206 * 11 10 8 13 13 C 1.34054 * 108.22885 * 0.36000 * 12 11 10 14 14 C 1.50698 * 125.37543 * 179.77200 * 13 12 11 15 15 F 1.39897 * 109.47086 * 269.99757 * 14 13 12 16 16 F 1.39898 * 109.47275 * 30.00110 * 14 13 12 17 17 F 1.39899 * 109.46617 * 150.00255 * 14 13 12 18 18 N 1.29933 * 109.24077 * 359.77390 * 13 12 11 19 19 C 1.53039 * 109.53519 * 61.36044 * 5 4 2 20 20 C 1.53188 * 109.31544 * 298.63572 * 19 5 4 21 21 N 1.46923 * 108.77768 * 54.63772 * 20 19 5 22 22 C 1.36930 * 120.63165 * 126.41061 * 21 20 19 23 23 H 1.08002 * 119.99932 * 207.67561 * 22 21 20 24 24 C 1.38807 * 120.00119 * 27.67986 * 22 21 20 25 25 N 1.31618 * 120.00087 * 17.35530 * 24 22 21 26 26 Si 1.86804 * 120.00185 * 197.35222 * 24 22 21 27 27 H 1.48496 * 109.46861 * 90.00244 * 26 24 22 28 28 H 1.48507 * 109.47219 * 210.00151 * 26 24 22 29 29 H 1.48501 * 109.47031 * 329.99890 * 26 24 22 30 30 H 1.09006 * 109.47188 * 180.28893 * 1 2 3 31 31 H 1.09001 * 109.47106 * 300.28018 * 1 2 3 32 32 H 1.08999 * 109.47619 * 60.28393 * 1 2 3 33 33 H 1.08997 * 109.49502 * 305.26666 * 4 2 1 34 34 H 1.09003 * 109.49188 * 185.17718 * 4 2 1 35 35 H 0.97000 * 120.00056 * 334.92401 * 7 5 4 36 36 H 1.07997 * 126.52083 * 0.03686 * 11 10 8 37 37 H 1.08997 * 109.49869 * 58.59405 * 19 5 4 38 38 H 1.09004 * 109.49740 * 178.68377 * 19 5 4 39 39 H 1.09004 * 109.58819 * 174.42764 * 20 19 5 40 40 H 1.09004 * 109.58698 * 294.84951 * 20 19 5 41 41 H 0.97001 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6474 -2.2043 1.1692 6 1 0.5625 -2.2837 1.0995 7 7 2.1111 -2.8975 2.3736 8 6 1.4858 -4.0164 2.7901 9 8 0.5362 -4.4503 2.1663 10 6 1.9486 -4.7105 4.0055 11 6 1.4109 -5.8371 4.5476 12 8 2.1336 -6.1289 5.6407 13 6 3.0893 -5.1980 5.7723 14 6 4.1162 -5.1517 6.8742 15 9 3.6175 -4.4022 7.9451 16 9 4.3962 -6.4526 7.3058 17 9 5.2882 -4.5570 6.3947 18 7 2.9902 -4.3422 4.7997 19 6 2.2858 -2.8448 -0.0655 20 6 1.7719 -2.1400 -1.3248 21 7 2.0225 -0.6981 -1.1954 22 6 2.7018 -0.0177 -2.1704 23 1 3.2655 0.8683 -1.9178 24 6 2.6659 -0.4666 -3.4834 25 7 1.7345 -1.3153 -3.8635 26 14 3.9395 0.1339 -4.7110 27 1 5.1121 -0.7771 -4.6932 28 1 3.3459 0.1503 -6.0721 29 1 4.3729 1.5059 -4.3435 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.6106 -0.2791 2.1366 34 1 3.1326 -0.6475 1.2891 35 1 2.8683 -2.5512 2.8712 36 1 0.5652 -6.3920 4.1691 37 1 3.3695 -2.7437 -0.0085 38 1 2.0201 -3.9012 -0.1058 39 1 2.2969 -2.5251 -2.1990 40 1 0.7016 -2.3167 -1.4315 41 1 1.7097 -1.6293 -4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947502383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:16 Heat of formation + Delta-G solvation = -134.415985 kcal Electronic energy + Delta-G solvation = -30651.345537 eV Core-core repulsion = 25733.147113 eV Total energy + Delta-G solvation = -4918.198424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.88889 -48.41811 -48.37980 -44.23527 -39.81781 -37.81391 -35.69135 -34.59060 -32.56372 -31.99276 -30.80675 -29.58505 -27.41237 -26.98240 -25.09873 -24.02886 -22.79846 -22.00899 -21.78440 -20.73028 -19.61705 -19.36876 -19.05861 -18.40964 -17.72041 -17.39517 -17.03449 -16.55630 -15.99918 -15.20417 -15.16621 -14.84705 -14.79061 -14.76690 -14.48824 -14.48164 -14.46140 -14.09368 -13.78682 -13.74473 -13.46474 -13.09964 -12.72742 -12.53944 -12.25953 -12.10286 -11.69512 -11.43614 -11.09976 -10.95749 -10.84310 -10.66883 -10.39108 -10.29393 -10.19006 -9.97924 -9.95731 -9.74354 -9.41486 -8.81772 -8.43180 -6.70964 -5.79481 -3.21942 0.32302 0.96826 1.16195 2.08513 2.64267 3.02197 3.05034 3.37910 3.45006 3.45814 3.49151 3.54478 4.03287 4.27432 4.48123 4.59162 4.88637 5.12419 5.27078 5.36408 5.39183 5.55551 5.75498 5.97845 6.04302 6.21188 6.25919 6.37122 6.41446 6.49240 6.56800 6.61913 6.75118 6.81913 6.92150 7.13691 7.36153 7.53357 7.67777 7.79610 8.11325 8.44439 9.20350 9.83673 10.40022 11.28802 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002302 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.258416 B =12161.549987 C =12528.941849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.701 5.701 8 C 0.597 3.403 9 O -0.529 6.529 10 C -0.062 4.062 11 C 0.054 3.946 12 O -0.168 6.168 13 C 0.090 3.910 14 C 0.588 3.412 15 F -0.153 7.153 16 F -0.156 7.156 17 F -0.141 7.141 18 N -0.388 5.388 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.253 4.253 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.404 0.596 36 H 0.249 0.751 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.022 0.978 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.847 -9.224 22.671 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.350 5.350 8 C 0.380 3.620 9 O -0.406 6.406 10 C -0.185 4.185 11 C -0.021 4.021 12 O -0.052 6.052 13 C -0.120 4.120 14 C 0.532 3.468 15 F -0.134 7.134 16 F -0.137 7.137 17 F -0.121 7.121 18 N -0.120 5.120 19 C -0.188 4.188 20 C 0.048 3.952 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.265 0.735 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.040 0.960 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.585 -9.063 21.997 23.844 hybrid contribution 0.657 -0.237 -0.226 0.734 sum 2.242 -9.300 21.772 23.781 Atomic orbital electron populations 1.22308 0.98652 1.01097 1.00153 1.20437 0.91797 0.95165 0.86384 0.91534 1.22314 1.01433 0.93787 0.99751 1.21250 0.99965 0.91557 0.82699 0.89300 1.46206 1.34131 1.25705 1.28912 1.16592 0.82819 0.81027 0.81550 1.90874 1.27718 1.66027 1.55953 1.22234 0.96721 0.98916 1.00598 1.25793 0.96052 0.96551 0.83660 1.84403 1.35147 1.45268 1.40342 1.25435 0.96163 0.90009 1.00392 1.15952 0.78033 0.74913 0.77913 1.93326 1.87314 1.76428 1.56321 1.93307 1.93791 1.36497 1.90107 1.93339 1.47272 1.83590 1.87948 1.70665 1.16008 1.23985 1.01387 1.22597 1.00365 0.99165 0.96689 1.20749 0.97764 0.82910 0.93800 1.44170 1.63915 1.03404 1.19155 1.19177 1.22202 1.10159 0.86723 0.91593 1.25040 0.97698 0.99996 0.96792 1.70033 1.31723 1.35699 1.16980 0.86302 0.81344 0.78499 0.80679 1.21487 1.21815 1.20449 0.93221 0.94461 0.92531 0.92431 0.91667 0.76091 0.73543 0.92487 0.92846 0.89189 0.95977 0.93605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.03 37.16 0.34 -2.71 16 2 C 0.17 3.37 3.28 -67.60 -0.22 3.14 16 3 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 4 C -0.13 -2.18 5.03 -26.61 -0.13 -2.31 16 5 C 0.15 2.50 2.21 -67.89 -0.15 2.35 16 6 H 0.09 1.64 5.94 -51.93 -0.31 1.34 16 7 N -0.70 -10.06 5.07 -54.85 -0.28 -10.34 16 8 C 0.60 8.60 7.78 -12.52 -0.10 8.50 16 9 O -0.53 -9.03 16.55 5.26 0.09 -8.95 16 10 C -0.06 -0.72 6.99 -83.02 -0.58 -1.30 16 11 C 0.05 0.45 11.95 29.96 0.36 0.81 16 12 O -0.17 -1.45 10.70 6.51 0.07 -1.38 16 13 C 0.09 0.86 7.53 -13.08 -0.10 0.77 16 14 C 0.59 4.77 3.57 36.00 0.13 4.90 16 15 F -0.15 -1.22 17.30 2.25 0.04 -1.18 16 16 F -0.16 -1.18 17.28 2.25 0.04 -1.14 16 17 F -0.14 -1.23 17.23 2.25 0.04 -1.19 16 18 N -0.39 -4.41 10.96 -7.65 -0.08 -4.49 16 19 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 20 C 0.17 4.09 4.90 -3.71 -0.02 4.08 16 21 N -0.58 -14.01 2.70 -164.78 -0.45 -14.46 16 22 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 23 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 25 N -0.90 -25.75 11.19 55.49 0.62 -25.13 16 26 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 30 H 0.05 0.96 5.74 -51.93 -0.30 0.66 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.40 5.15 8.33 -40.82 -0.34 4.81 16 36 H 0.25 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 40 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 356.90 15.07 5.38 5.38 Total: -1.00 -30.33 356.90 -4.99 -35.32 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.57 Total: 2.83 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.86 Total: 8.34 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.19 Total: -54.42 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.16 Total: -10.33 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.12 Total: -3.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.33 -4.99 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947502383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.095 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds