Wall clock time and date at job start Wed Apr 1 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.57995 * 2 1 4 4 C 1.53192 * 109.70209 * 120.35530 * 2 1 3 5 5 C 1.53036 * 109.31632 * 65.22311 * 4 2 1 6 6 H 1.08999 * 109.44576 * 301.34888 * 5 4 2 7 7 N 1.46497 * 109.45834 * 181.38394 * 5 4 2 8 8 C 1.34779 * 119.99921 * 154.93404 * 7 5 4 9 9 O 1.21618 * 119.99883 * 359.97438 * 8 7 5 10 10 C 1.47416 * 120.00220 * 180.27368 * 8 7 5 11 11 C 1.36092 * 126.45190 * 179.43782 * 10 8 7 12 12 O 1.34252 * 106.94944 * 179.90206 * 11 10 8 13 13 C 1.34054 * 108.22885 * 0.36000 * 12 11 10 14 14 C 1.50698 * 125.37543 * 179.77200 * 13 12 11 15 15 F 1.39897 * 109.47086 * 269.99757 * 14 13 12 16 16 F 1.39898 * 109.47275 * 30.00110 * 14 13 12 17 17 F 1.39899 * 109.46617 * 150.00255 * 14 13 12 18 18 N 1.29933 * 109.24077 * 359.77390 * 13 12 11 19 19 C 1.53039 * 109.53519 * 61.36044 * 5 4 2 20 20 C 1.53188 * 109.31544 * 298.63572 * 19 5 4 21 21 N 1.46923 * 108.77768 * 54.63772 * 20 19 5 22 22 C 1.36930 * 120.63165 * 126.41061 * 21 20 19 23 23 H 1.08002 * 119.99932 * 207.67561 * 22 21 20 24 24 C 1.38807 * 120.00119 * 27.67986 * 22 21 20 25 25 N 1.31618 * 120.00087 * 17.35530 * 24 22 21 26 26 Si 1.86804 * 120.00185 * 197.35222 * 24 22 21 27 27 H 1.48496 * 109.46861 * 90.00244 * 26 24 22 28 28 H 1.48507 * 109.47219 * 210.00151 * 26 24 22 29 29 H 1.48501 * 109.47031 * 329.99890 * 26 24 22 30 30 H 1.09006 * 109.47188 * 180.28893 * 1 2 3 31 31 H 1.09001 * 109.47106 * 300.28018 * 1 2 3 32 32 H 1.08999 * 109.47619 * 60.28393 * 1 2 3 33 33 H 1.08997 * 109.49502 * 305.26666 * 4 2 1 34 34 H 1.09003 * 109.49188 * 185.17718 * 4 2 1 35 35 H 0.97000 * 120.00056 * 334.92401 * 7 5 4 36 36 H 1.07997 * 126.52083 * 0.03686 * 11 10 8 37 37 H 1.08997 * 109.49869 * 58.59405 * 19 5 4 38 38 H 1.09004 * 109.49740 * 178.68377 * 19 5 4 39 39 H 1.09004 * 109.58819 * 174.42764 * 20 19 5 40 40 H 1.09004 * 109.58698 * 294.84951 * 20 19 5 41 41 H 0.97001 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 1.6474 -2.2043 1.1692 6 1 0.5625 -2.2837 1.0995 7 7 2.1111 -2.8975 2.3736 8 6 1.4858 -4.0164 2.7901 9 8 0.5362 -4.4503 2.1663 10 6 1.9486 -4.7105 4.0055 11 6 1.4109 -5.8371 4.5476 12 8 2.1336 -6.1289 5.6407 13 6 3.0893 -5.1980 5.7723 14 6 4.1162 -5.1517 6.8742 15 9 3.6175 -4.4022 7.9451 16 9 4.3962 -6.4526 7.3058 17 9 5.2882 -4.5570 6.3947 18 7 2.9902 -4.3422 4.7997 19 6 2.2858 -2.8448 -0.0655 20 6 1.7719 -2.1400 -1.3248 21 7 2.0225 -0.6981 -1.1954 22 6 2.7018 -0.0177 -2.1704 23 1 3.2655 0.8683 -1.9178 24 6 2.6659 -0.4666 -3.4834 25 7 1.7345 -1.3153 -3.8635 26 14 3.9395 0.1339 -4.7110 27 1 5.1121 -0.7771 -4.6932 28 1 3.3459 0.1503 -6.0721 29 1 4.3729 1.5059 -4.3435 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.6106 -0.2791 2.1366 34 1 3.1326 -0.6475 1.2891 35 1 2.8683 -2.5512 2.8712 36 1 0.5652 -6.3920 4.1691 37 1 3.3695 -2.7437 -0.0085 38 1 2.0201 -3.9012 -0.1058 39 1 2.2969 -2.5251 -2.1990 40 1 0.7016 -2.3167 -1.4315 41 1 1.7097 -1.6293 -4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947502383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:15 Heat of formation + Delta-G solvation = -156.112073 kcal Electronic energy + Delta-G solvation = -30652.286350 eV Core-core repulsion = 25733.147113 eV Total energy + Delta-G solvation = -4919.139237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.52351 -49.03662 -49.02698 -44.98685 -41.07045 -39.33896 -36.50781 -36.08142 -34.31070 -32.86073 -32.39185 -31.29518 -28.64334 -28.07161 -26.43573 -25.51928 -23.77289 -23.53548 -23.05176 -21.87197 -20.64190 -20.00934 -19.89868 -19.66302 -18.88814 -18.42003 -18.12644 -17.56957 -17.40315 -16.63556 -16.05430 -15.86681 -15.79385 -15.72282 -15.50573 -15.39598 -15.26910 -15.12002 -15.11514 -15.10762 -14.63870 -14.33277 -14.16904 -14.13471 -13.89886 -13.15897 -12.99402 -12.89801 -12.66407 -12.55409 -12.47567 -12.31632 -12.05166 -11.99865 -11.81722 -11.51099 -11.44776 -11.02250 -10.76013 -10.55067 -10.08096 -8.68152 -7.85026 -5.29438 -0.38882 0.28601 0.29010 1.37427 1.47908 1.49630 1.57810 1.88642 1.99754 2.05542 2.52603 2.84833 2.90693 3.17609 3.30545 3.41349 3.63573 3.80824 3.85878 4.06156 4.24133 4.27419 4.34867 4.43928 4.51634 4.71177 4.74707 4.85458 4.87283 5.06628 5.10661 5.17153 5.33378 5.41481 5.45347 5.55638 5.69651 5.73010 5.77424 6.40654 6.42216 6.99807 7.17114 7.88967 8.40520 9.21495 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.002302 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.258416 B =12161.549987 C =12528.941849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.075 0.925 7 N -0.696 5.696 8 C 0.600 3.400 9 O -0.560 6.560 10 C -0.094 4.094 11 C 0.088 3.912 12 O -0.161 6.161 13 C 0.090 3.910 14 C 0.597 3.403 15 F -0.150 7.150 16 F -0.151 7.151 17 F -0.144 7.144 18 N -0.404 5.404 19 C -0.134 4.134 20 C 0.185 3.815 21 N -0.600 5.600 22 C -0.257 4.257 23 H 0.071 0.929 24 C -0.051 4.051 25 N -0.935 5.935 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.282 0.718 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.053 0.947 40 H -0.004 1.004 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -9.280 25.237 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.087 0.913 4 C -0.159 4.159 5 C 0.057 3.943 6 H 0.093 0.907 7 N -0.345 5.345 8 C 0.386 3.614 9 O -0.439 6.439 10 C -0.215 4.215 11 C 0.014 3.986 12 O -0.044 6.044 13 C -0.120 4.120 14 C 0.540 3.460 15 F -0.132 7.132 16 F -0.132 7.132 17 F -0.125 7.125 18 N -0.136 5.136 19 C -0.174 4.174 20 C 0.058 3.942 21 N -0.322 5.322 22 C -0.388 4.388 23 H 0.088 0.912 24 C -0.246 4.246 25 N -0.581 5.581 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.225 1.225 29 H -0.191 1.191 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.251 0.749 36 H 0.298 0.702 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.225 -9.096 24.622 26.343 hybrid contribution 0.428 -0.251 -0.941 1.064 sum 2.653 -9.347 23.681 25.597 Atomic orbital electron populations 1.22185 0.97878 1.00536 1.00636 1.20688 0.92400 0.95423 0.86047 0.91285 1.22148 1.01820 0.92857 0.99087 1.20866 0.98835 0.92022 0.82587 0.90678 1.45959 1.34577 1.25882 1.28061 1.16839 0.82091 0.80537 0.81974 1.90861 1.29064 1.66758 1.57228 1.21834 0.98447 1.00554 1.00686 1.26428 0.95213 0.94865 0.82122 1.84457 1.34872 1.44835 1.40224 1.25617 0.96395 0.89771 1.00262 1.15774 0.77566 0.75034 0.77579 1.93333 1.87276 1.76427 1.56124 1.93321 1.93709 1.36167 1.89987 1.93334 1.47473 1.83703 1.88025 1.70580 1.16251 1.24803 1.01922 1.22353 1.00203 0.98616 0.96203 1.20428 0.95739 0.83518 0.94476 1.44380 1.64285 1.03646 1.19929 1.19526 1.21872 1.09968 0.87391 0.91181 1.25765 0.99475 1.00796 0.98598 1.70192 1.33555 1.37454 1.16872 0.85316 0.78888 0.78447 0.78093 1.21492 1.22538 1.19148 0.94331 0.90700 0.95170 0.89080 0.91144 0.74878 0.70230 0.92494 0.93188 0.92815 0.98568 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 9.03 71.98 0.65 -4.97 16 2 C 0.16 6.21 3.28 44.98 0.15 6.36 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 4 C -0.12 -3.65 5.03 30.67 0.15 -3.50 16 5 C 0.16 5.26 2.21 45.02 0.10 5.36 16 6 H 0.08 2.73 5.94 -2.39 -0.01 2.72 16 7 N -0.70 -18.81 5.07 -445.68 -2.26 -21.07 16 8 C 0.60 16.41 7.78 86.66 0.67 17.09 16 9 O -0.56 -18.61 16.55 -4.09 -0.07 -18.68 16 10 C -0.09 -1.96 6.99 40.41 0.28 -1.68 16 11 C 0.09 1.23 11.95 67.32 0.80 2.03 16 12 O -0.16 -2.31 10.70 0.39 0.00 -2.30 16 13 C 0.09 1.52 7.53 88.39 0.67 2.19 16 14 C 0.60 8.46 3.57 71.24 0.25 8.71 16 15 F -0.15 -2.10 17.30 44.97 0.78 -1.32 16 16 F -0.15 -1.97 17.28 44.97 0.78 -1.19 16 17 F -0.14 -2.29 17.23 44.97 0.77 -1.51 16 18 N -0.40 -8.33 10.96 -293.04 -3.21 -11.54 16 19 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 20 C 0.18 9.02 4.90 86.36 0.42 9.44 16 21 N -0.60 -29.13 2.70 -675.23 -1.82 -30.95 16 22 C -0.26 -13.84 9.58 84.03 0.81 -13.03 16 23 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 24 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 25 N -0.93 -55.52 11.19 21.65 0.24 -55.28 16 26 Si 0.96 44.82 29.59 68.60 2.03 46.85 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 29 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 30 H 0.04 1.48 5.74 -2.38 -0.01 1.47 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.41 9.66 8.33 -92.71 -0.77 8.89 16 36 H 0.28 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.05 3.00 6.04 -2.39 -0.01 2.98 16 40 H 0.00 -0.20 7.50 -2.38 -0.02 -0.22 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -67.43 356.90 3.13 -64.30 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.34 Total: 12.17 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 5.55 Total: 20.54 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -7.06 Total: -118.85 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.06 Total: -20.98 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 2.33 Total: -4.03 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.43 3.13 -64.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947502383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.810 kcal (2) G-P(sol) polarization free energy of solvation -67.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds