Wall clock time and date at job start Wed Apr 1 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.58685 * 2 1 4 4 C 1.53196 * 109.58504 * 239.71570 * 2 1 3 5 5 C 1.53037 * 109.31325 * 294.70155 * 4 2 1 6 6 H 1.09003 * 109.45891 * 58.64567 * 5 4 2 7 7 N 1.46500 * 109.45794 * 178.61348 * 5 4 2 8 8 C 1.34776 * 119.99581 * 205.00147 * 7 5 4 9 9 O 1.21609 * 120.00788 * 0.02562 * 8 7 5 10 10 C 1.47405 * 119.99621 * 180.02562 * 8 7 5 11 11 C 1.37360 * 128.56495 * 0.02684 * 10 8 7 12 12 O 1.33493 * 106.33924 * 179.97438 * 11 10 8 13 13 N 1.20660 * 113.16095 * 0.02562 * 12 11 10 14 14 C 1.30019 * 112.29692 * 359.97438 * 13 12 11 15 15 C 1.50702 * 127.33108 * 180.02562 * 14 13 12 16 16 F 1.39898 * 109.47460 * 4.98322 * 15 14 13 17 17 F 1.39907 * 109.46733 * 124.98150 * 15 14 13 18 18 F 1.39895 * 109.47263 * 244.98005 * 15 14 13 19 19 C 1.53035 * 109.54253 * 298.63892 * 5 4 2 20 20 C 1.53190 * 109.31534 * 61.35931 * 19 5 4 21 21 N 1.46924 * 108.77699 * 305.37023 * 20 19 5 22 22 C 1.36932 * 120.63264 * 233.62489 * 21 20 19 23 23 H 1.08001 * 120.00259 * 151.80586 * 22 21 20 24 24 C 1.38815 * 119.99818 * 331.81089 * 22 21 20 25 25 N 1.31621 * 120.00067 * 343.07799 * 24 22 21 26 26 Si 1.86803 * 119.99980 * 163.08559 * 24 22 21 27 27 H 1.48495 * 109.47570 * 89.99727 * 26 24 22 28 28 H 1.48501 * 109.46868 * 209.99780 * 26 24 22 29 29 H 1.48502 * 109.47071 * 329.99228 * 26 24 22 30 30 H 1.08998 * 109.46871 * 180.28439 * 1 2 3 31 31 H 1.09003 * 109.46724 * 300.28511 * 1 2 3 32 32 H 1.08996 * 109.46786 * 60.28440 * 1 2 3 33 33 H 1.09007 * 109.49456 * 174.75188 * 4 2 1 34 34 H 1.09000 * 109.49558 * 54.65955 * 4 2 1 35 35 H 0.96990 * 120.00200 * 25.00672 * 7 5 4 36 36 H 1.07994 * 126.82819 * 359.95951 * 11 10 8 37 37 H 1.08998 * 109.50280 * 181.31814 * 19 5 4 38 38 H 1.09002 * 109.49652 * 301.40958 * 19 5 4 39 39 H 1.09002 * 109.59244 * 185.57947 * 20 19 5 40 40 H 1.09008 * 109.70139 * 65.22298 * 20 19 5 41 41 H 0.96999 * 119.99990 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2464 5 6 1.6446 -2.2034 -1.1712 6 1 0.5599 -2.2830 -1.0989 7 7 2.1054 -2.8956 -2.3773 8 6 1.4799 -4.0149 -2.7923 9 8 0.5326 -4.4501 -2.1660 10 6 1.9439 -4.7117 -4.0056 11 6 2.9845 -4.3800 -4.8385 12 8 3.0114 -5.3107 -5.7950 13 7 2.1513 -6.1473 -5.6674 14 6 1.4069 -5.9342 -4.6229 15 6 0.2422 -6.7632 -4.1462 16 9 0.1245 -7.9053 -4.9456 17 9 0.4542 -7.1443 -2.8169 18 9 -0.9333 -6.0097 -4.2336 19 6 2.2859 -2.8449 0.0614 20 6 1.7752 -2.1411 1.3225 21 7 2.0255 -0.6991 1.1936 22 6 2.7078 -0.0196 2.1671 23 1 3.2776 0.8618 1.9121 24 6 2.6673 -0.4636 3.4817 25 7 1.7351 -1.3116 3.8614 26 14 3.9357 0.1426 4.7118 27 1 3.4346 1.3738 5.3736 28 1 4.1742 -0.9072 5.7347 29 1 5.2068 0.4427 4.0050 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 3.1296 -0.6466 -1.2935 34 1 1.6055 -0.2774 -2.1370 35 1 2.8607 -2.5484 -2.8770 36 1 3.6487 -3.5342 -4.7393 37 1 2.0204 -3.9013 0.1015 38 1 3.3696 -2.7438 0.0019 39 1 2.3022 -2.5268 2.1952 40 1 0.7053 -2.3177 1.4342 41 1 1.7070 -1.6222 4.7799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947547419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:36 Heat of formation + Delta-G solvation = -97.278973 kcal Electronic energy + Delta-G solvation = -31443.356747 eV Core-core repulsion = 26526.768705 eV Total energy + Delta-G solvation = -4916.588042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.36160 -47.92215 -47.81110 -45.76944 -39.92552 -37.85231 -34.80411 -34.69791 -33.08000 -32.39427 -30.83271 -29.62785 -27.66049 -26.99471 -25.39144 -24.18337 -22.41813 -22.15522 -21.87314 -20.65990 -19.57154 -18.97073 -18.73925 -18.46045 -18.19299 -17.87471 -16.86076 -16.32459 -16.07526 -15.12430 -14.88726 -14.73411 -14.65732 -14.55748 -14.24233 -14.00957 -13.97035 -13.92892 -13.80536 -13.74418 -13.18649 -12.80421 -12.74171 -12.61370 -12.37880 -12.28272 -11.48477 -11.26191 -11.13366 -11.00616 -10.86616 -10.67616 -10.47257 -10.38903 -10.29233 -10.25216 -10.00211 -9.79073 -9.45941 -8.90815 -8.46843 -6.73341 -5.82497 -3.25713 0.47357 0.73518 1.89903 2.26074 2.92489 2.96202 3.00068 3.32186 3.34883 3.42387 3.43550 4.00563 4.05771 4.16209 4.32434 4.45044 4.64956 4.83957 5.19274 5.30571 5.35692 5.49679 5.68211 5.92780 5.98093 6.12611 6.21365 6.30397 6.37464 6.50914 6.56154 6.71741 6.74715 6.88021 7.10206 7.25327 7.31810 7.41043 7.65261 7.76153 8.03904 8.41470 9.17098 9.80356 10.36768 11.25755 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.002642 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.412077 B =10595.933113 C =10873.555673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.090 0.910 7 N -0.711 5.711 8 C 0.582 3.418 9 O -0.510 6.510 10 C -0.201 4.201 11 C 0.001 3.999 12 O 0.132 5.868 13 N -0.297 5.297 14 C -0.039 4.039 15 C 0.562 3.438 16 F -0.168 7.168 17 F -0.150 7.150 18 F -0.156 7.156 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.585 5.585 22 C -0.256 4.256 23 H 0.066 0.934 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.394 0.606 36 H 0.241 0.759 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.023 0.977 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -5.878 -20.070 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.172 4.172 5 C 0.047 3.953 6 H 0.108 0.892 7 N -0.361 5.361 8 C 0.365 3.635 9 O -0.385 6.385 10 C -0.209 4.209 11 C -0.080 4.080 12 O 0.059 5.941 13 N 0.007 4.993 14 C -0.203 4.203 15 C 0.506 3.494 16 F -0.150 7.150 17 F -0.131 7.131 18 F -0.137 7.137 19 C -0.188 4.188 20 C 0.047 3.953 21 N -0.306 5.306 22 C -0.385 4.385 23 H 0.083 0.917 24 C -0.194 4.194 25 N -0.543 5.543 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.041 0.959 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.869 -7.242 -20.325 21.657 hybrid contribution 0.715 0.774 1.134 1.548 sum 2.583 -6.468 -19.191 20.416 Atomic orbital electron populations 1.22313 0.98647 1.01195 1.00134 1.20433 0.91802 0.95133 0.86440 0.91552 1.22323 1.01259 0.93781 0.99872 1.21243 1.00193 0.91376 0.82438 0.89182 1.46157 1.34387 1.26112 1.29418 1.16760 0.83380 0.81041 0.82275 1.90907 1.27042 1.64984 1.55595 1.22414 0.99685 0.97563 1.01247 1.26578 0.98515 0.95329 0.87603 1.84621 1.40178 1.26966 1.42330 1.73753 0.99378 1.09715 1.16443 1.24673 1.00961 0.98359 0.96273 1.16473 0.80135 0.76879 0.75889 1.93244 1.96223 1.51752 1.73732 1.93320 1.94621 1.91116 1.34016 1.93283 1.48580 1.75933 1.95880 1.22590 1.00201 0.99313 0.96700 1.20743 0.97893 0.82875 0.93755 1.44168 1.63687 1.03369 1.19395 1.19132 1.22082 1.10618 0.86680 0.91677 1.25063 0.97642 0.99878 0.96839 1.70027 1.31754 1.35562 1.16920 0.86332 0.81538 0.77944 0.81128 1.21410 1.21586 1.20510 0.93169 0.92558 0.94457 0.91742 0.92443 0.77292 0.74315 0.92728 0.92531 0.89248 0.95919 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.03 37.16 0.34 -2.63 16 2 C 0.17 3.20 3.28 -67.59 -0.22 2.98 16 3 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 4 C -0.13 -1.94 5.02 -26.61 -0.13 -2.08 16 5 C 0.15 2.32 2.21 -67.89 -0.15 2.17 16 6 H 0.09 1.60 5.94 -51.93 -0.31 1.29 16 7 N -0.71 -8.29 5.07 -54.85 -0.28 -8.57 16 8 C 0.58 7.82 7.78 -12.53 -0.10 7.72 16 9 O -0.51 -9.05 15.19 5.27 0.08 -8.97 16 10 C -0.20 -2.10 6.47 -102.89 -0.67 -2.76 16 11 C 0.00 0.00 11.85 30.41 0.36 0.36 16 12 O 0.13 1.00 11.06 18.65 0.21 1.20 16 13 N -0.30 -3.15 11.85 34.78 0.41 -2.74 16 14 C -0.04 -0.47 6.83 -79.76 -0.54 -1.02 16 15 C 0.56 7.44 3.01 36.01 0.11 7.55 16 16 F -0.17 -2.10 17.19 2.25 0.04 -2.06 16 17 F -0.15 -2.20 16.38 2.25 0.04 -2.17 16 18 F -0.16 -2.18 17.23 2.25 0.04 -2.15 16 19 C -0.15 -2.72 5.65 -26.62 -0.15 -2.87 16 20 C 0.17 3.98 4.89 -3.71 -0.02 3.96 16 21 N -0.58 -13.57 2.70 -164.77 -0.45 -14.02 16 22 C -0.26 -6.63 9.58 -15.06 -0.14 -6.78 16 23 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16 24 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 25 N -0.90 -25.41 11.20 55.49 0.62 -24.79 16 26 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.05 0.95 5.75 -51.93 -0.30 0.65 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.39 2.97 7.79 -40.82 -0.32 2.66 16 36 H 0.24 0.07 7.68 -52.49 -0.40 -0.33 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 40 H 0.02 0.56 7.50 -51.92 -0.39 0.17 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -32.09 353.02 -4.93 -37.03 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.53 Total: -0.72 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.41 Total: 6.65 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.31 Total: -50.11 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: 0.29 Total: -7.77 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 0.11 Total: -6.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.09 -4.93 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947547419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.250 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds