Wall clock time and date at job start Wed Apr 1 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.58685 * 2 1 4 4 C 1.53196 * 109.58504 * 239.71570 * 2 1 3 5 5 C 1.53037 * 109.31325 * 294.70155 * 4 2 1 6 6 H 1.09003 * 109.45891 * 58.64567 * 5 4 2 7 7 N 1.46500 * 109.45794 * 178.61348 * 5 4 2 8 8 C 1.34776 * 119.99581 * 205.00147 * 7 5 4 9 9 O 1.21609 * 120.00788 * 0.02562 * 8 7 5 10 10 C 1.47405 * 119.99621 * 180.02562 * 8 7 5 11 11 C 1.37360 * 128.56495 * 0.02684 * 10 8 7 12 12 O 1.33493 * 106.33924 * 179.97438 * 11 10 8 13 13 N 1.20660 * 113.16095 * 0.02562 * 12 11 10 14 14 C 1.30019 * 112.29692 * 359.97438 * 13 12 11 15 15 C 1.50702 * 127.33108 * 180.02562 * 14 13 12 16 16 F 1.39898 * 109.47460 * 4.98322 * 15 14 13 17 17 F 1.39907 * 109.46733 * 124.98150 * 15 14 13 18 18 F 1.39895 * 109.47263 * 244.98005 * 15 14 13 19 19 C 1.53035 * 109.54253 * 298.63892 * 5 4 2 20 20 C 1.53190 * 109.31534 * 61.35931 * 19 5 4 21 21 N 1.46924 * 108.77699 * 305.37023 * 20 19 5 22 22 C 1.36932 * 120.63264 * 233.62489 * 21 20 19 23 23 H 1.08001 * 120.00259 * 151.80586 * 22 21 20 24 24 C 1.38815 * 119.99818 * 331.81089 * 22 21 20 25 25 N 1.31621 * 120.00067 * 343.07799 * 24 22 21 26 26 Si 1.86803 * 119.99980 * 163.08559 * 24 22 21 27 27 H 1.48495 * 109.47570 * 89.99727 * 26 24 22 28 28 H 1.48501 * 109.46868 * 209.99780 * 26 24 22 29 29 H 1.48502 * 109.47071 * 329.99228 * 26 24 22 30 30 H 1.08998 * 109.46871 * 180.28439 * 1 2 3 31 31 H 1.09003 * 109.46724 * 300.28511 * 1 2 3 32 32 H 1.08996 * 109.46786 * 60.28440 * 1 2 3 33 33 H 1.09007 * 109.49456 * 174.75188 * 4 2 1 34 34 H 1.09000 * 109.49558 * 54.65955 * 4 2 1 35 35 H 0.96990 * 120.00200 * 25.00672 * 7 5 4 36 36 H 1.07994 * 126.82819 * 359.95951 * 11 10 8 37 37 H 1.08998 * 109.50280 * 181.31814 * 19 5 4 38 38 H 1.09002 * 109.49652 * 301.40958 * 19 5 4 39 39 H 1.09002 * 109.59244 * 185.57947 * 20 19 5 40 40 H 1.09008 * 109.70139 * 65.22298 * 20 19 5 41 41 H 0.96999 * 119.99990 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2464 5 6 1.6446 -2.2034 -1.1712 6 1 0.5599 -2.2830 -1.0989 7 7 2.1054 -2.8956 -2.3773 8 6 1.4799 -4.0149 -2.7923 9 8 0.5326 -4.4501 -2.1660 10 6 1.9439 -4.7117 -4.0056 11 6 2.9845 -4.3800 -4.8385 12 8 3.0114 -5.3107 -5.7950 13 7 2.1513 -6.1473 -5.6674 14 6 1.4069 -5.9342 -4.6229 15 6 0.2422 -6.7632 -4.1462 16 9 0.1245 -7.9053 -4.9456 17 9 0.4542 -7.1443 -2.8169 18 9 -0.9333 -6.0097 -4.2336 19 6 2.2859 -2.8449 0.0614 20 6 1.7752 -2.1411 1.3225 21 7 2.0255 -0.6991 1.1936 22 6 2.7078 -0.0196 2.1671 23 1 3.2776 0.8618 1.9121 24 6 2.6673 -0.4636 3.4817 25 7 1.7351 -1.3116 3.8614 26 14 3.9357 0.1426 4.7118 27 1 3.4346 1.3738 5.3736 28 1 4.1742 -0.9072 5.7347 29 1 5.2068 0.4427 4.0050 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 3.1296 -0.6466 -1.2935 34 1 1.6055 -0.2774 -2.1370 35 1 2.8607 -2.5484 -2.8770 36 1 3.6487 -3.5342 -4.7393 37 1 2.0204 -3.9013 0.1015 38 1 3.3696 -2.7438 0.0019 39 1 2.3022 -2.5268 2.1952 40 1 0.7053 -2.3177 1.4342 41 1 1.7070 -1.6222 4.7799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947547419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:34 Heat of formation + Delta-G solvation = -119.282130 kcal Electronic energy + Delta-G solvation = -31444.310876 eV Core-core repulsion = 26526.768705 eV Total energy + Delta-G solvation = -4917.542171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -51.39504 -48.94252 -48.88798 -46.51622 -41.07164 -39.29645 -36.11194 -35.55303 -34.44107 -33.56496 -32.37083 -31.23768 -28.77701 -28.34164 -26.50290 -25.75848 -23.72082 -23.27415 -23.22222 -21.74927 -20.49920 -19.97829 -19.92744 -19.51631 -19.13481 -19.01715 -18.40868 -17.40625 -17.21902 -16.60116 -16.04119 -15.96125 -15.73394 -15.70133 -15.48574 -15.39906 -15.29293 -15.04496 -15.00509 -14.81380 -14.59937 -14.28401 -14.15095 -13.88053 -13.68183 -13.18954 -13.11801 -12.90918 -12.60007 -12.54778 -12.25702 -12.06121 -12.00018 -11.98232 -11.75995 -11.47603 -11.35910 -11.11990 -10.97117 -10.53244 -10.05775 -8.65137 -7.83114 -5.28161 -0.18969 -0.01213 1.02875 1.48940 1.51057 1.59409 1.60156 1.96982 2.05424 2.13220 2.45889 2.54409 3.03741 3.18467 3.32508 3.38934 3.55993 3.65968 3.82991 3.98255 4.11951 4.32484 4.43010 4.48815 4.56297 4.74420 4.78390 4.88418 4.91124 5.13244 5.16209 5.21104 5.37780 5.47616 5.48620 5.58577 5.71788 5.80301 6.43682 6.45008 6.65393 7.12223 7.19008 7.91553 8.43081 9.23333 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.002642 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.412077 B =10595.933113 C =10873.555673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.072 0.928 4 C -0.116 4.116 5 C 0.163 3.837 6 H 0.064 0.936 7 N -0.691 5.691 8 C 0.584 3.416 9 O -0.564 6.564 10 C -0.235 4.235 11 C 0.061 3.939 12 O 0.153 5.847 13 N -0.308 5.308 14 C -0.064 4.064 15 C 0.556 3.444 16 F -0.168 7.168 17 F -0.165 7.165 18 F -0.166 7.166 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.255 4.255 23 H 0.074 0.926 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.963 3.037 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.265 1.265 30 H 0.033 0.967 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.420 0.580 36 H 0.304 0.696 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.050 0.950 40 H -0.012 1.012 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -4.072 -23.428 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.090 0.910 4 C -0.156 4.156 5 C 0.058 3.942 6 H 0.083 0.917 7 N -0.342 5.342 8 C 0.370 3.630 9 O -0.443 6.443 10 C -0.244 4.244 11 C -0.019 4.019 12 O 0.078 5.922 13 N -0.002 5.002 14 C -0.226 4.226 15 C 0.501 3.499 16 F -0.149 7.149 17 F -0.146 7.146 18 F -0.147 7.147 19 C -0.173 4.173 20 C 0.057 3.943 21 N -0.322 5.322 22 C -0.385 4.385 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.584 5.584 26 Si 0.792 3.208 27 H -0.215 1.215 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.258 0.742 36 H 0.319 0.681 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.006 0.994 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.736 -5.424 -23.758 24.825 hybrid contribution -0.168 0.241 2.091 2.112 sum 4.568 -5.183 -21.667 22.742 Atomic orbital electron populations 1.22213 0.98548 1.00196 1.00508 1.20733 0.91917 0.95689 0.86431 0.91006 1.22143 1.02449 0.92130 0.98839 1.20792 0.98524 0.92254 0.82598 0.91738 1.45690 1.34962 1.25429 1.28135 1.17076 0.82501 0.80826 0.82599 1.90895 1.29527 1.66380 1.57495 1.22041 1.02408 0.98102 1.01824 1.27615 0.95922 0.94354 0.84026 1.84624 1.38744 1.26641 1.42240 1.73781 0.99719 1.10690 1.16021 1.24524 1.01243 0.99319 0.97526 1.16688 0.80699 0.77136 0.75399 1.93233 1.96291 1.51853 1.73528 1.93280 1.94719 1.91320 1.35266 1.93251 1.49413 1.76146 1.95882 1.22325 1.00680 0.98165 0.96119 1.20400 0.95345 0.83769 0.94748 1.44389 1.64016 1.03484 1.20276 1.19537 1.21482 1.10283 0.87242 0.90812 1.25810 0.99478 1.00769 0.98791 1.70207 1.33845 1.37626 1.16678 0.85340 0.79852 0.76826 0.78792 1.21479 1.22636 1.18955 0.94836 0.95615 0.90570 0.89919 0.88479 0.74177 0.68139 0.93973 0.91437 0.93122 0.99437 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.55 9.03 71.98 0.65 -4.90 16 2 C 0.16 5.69 3.28 44.98 0.15 5.84 16 3 H 0.07 2.50 7.93 -2.38 -0.02 2.48 16 4 C -0.12 -2.93 5.02 30.67 0.15 -2.78 16 5 C 0.16 4.70 2.21 45.02 0.10 4.80 16 6 H 0.06 2.27 5.94 -2.39 -0.01 2.26 16 7 N -0.69 -13.56 5.07 -445.70 -2.26 -15.82 16 8 C 0.58 14.58 7.78 86.66 0.67 15.25 16 9 O -0.56 -20.33 15.19 -4.06 -0.06 -20.39 16 10 C -0.23 -4.21 6.47 -18.74 -0.12 -4.33 16 11 C 0.06 0.34 11.85 67.61 0.80 1.14 16 12 O 0.15 1.60 11.06 76.98 0.85 2.45 16 13 N -0.31 -5.78 11.85 -44.78 -0.53 -6.31 16 14 C -0.06 -1.45 6.83 45.16 0.31 -1.15 16 15 C 0.56 15.07 3.01 71.24 0.21 15.29 16 16 F -0.17 -4.28 17.19 44.97 0.77 -3.50 16 17 F -0.16 -5.09 16.38 44.97 0.74 -4.35 16 18 F -0.17 -4.84 17.23 44.97 0.78 -4.06 16 19 C -0.13 -4.86 5.65 30.67 0.17 -4.69 16 20 C 0.18 8.80 4.89 86.36 0.42 9.22 16 21 N -0.60 -27.93 2.70 -675.20 -1.83 -29.76 16 22 C -0.26 -13.25 9.58 84.03 0.81 -12.45 16 23 H 0.07 3.64 7.88 -2.91 -0.02 3.62 16 24 C -0.05 -2.91 4.92 84.86 0.42 -2.50 16 25 N -0.94 -55.52 11.20 21.65 0.24 -55.28 16 26 Si 0.96 43.84 29.59 68.60 2.03 45.87 16 27 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 30 H 0.03 1.29 5.75 -2.39 -0.01 1.28 16 31 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.42 3.74 7.79 -92.72 -0.72 3.01 16 36 H 0.30 -2.52 7.68 -2.91 -0.02 -2.54 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 40 H -0.01 -0.67 7.50 -2.38 -0.02 -0.69 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -78.05 353.02 5.86 -72.18 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: 0.39 Total: 0.23 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 4.75 Total: 18.76 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -4.37 Total: -107.18 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.79 Total: -17.94 kcal Atomic # 9 Polarization: -14.20 SS G_CDS: 2.28 Total: -11.92 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.05 5.86 -72.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947547419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.100 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds