Wall clock time and date at job start Wed Apr 1 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.58536 * 2 1 4 4 C 1.53190 * 109.70727 * 120.36155 * 2 1 3 5 5 C 1.53034 * 109.31431 * 174.49166 * 4 2 1 6 6 H 1.09004 * 109.44893 * 58.65158 * 5 4 2 7 7 N 1.46506 * 109.46177 * 178.61072 * 5 4 2 8 8 C 1.34766 * 120.00361 * 205.07061 * 7 5 4 9 9 O 1.21690 * 119.99806 * 359.97438 * 8 7 5 10 10 C 1.46720 * 120.00597 * 180.02562 * 8 7 5 11 11 O 1.35348 * 126.63871 * 359.67902 * 10 8 7 12 12 C 1.33661 * 107.68596 * 180.26741 * 11 10 8 13 13 N 1.30622 * 109.15261 * 359.97438 * 12 11 10 14 14 C 1.33686 * 108.99572 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.27573 * 180.02562 * 14 13 12 16 16 F 1.39897 * 109.47158 * 269.97405 * 15 14 13 17 17 F 1.39901 * 109.46796 * 29.97165 * 15 14 13 18 18 F 1.39894 * 109.47397 * 149.97087 * 15 14 13 19 19 C 1.53038 * 109.54190 * 298.63471 * 5 4 2 20 20 C 1.53196 * 109.31249 * 61.36052 * 19 5 4 21 21 N 1.46924 * 108.77551 * 305.37053 * 20 19 5 22 22 C 1.36938 * 120.62708 * 233.62468 * 21 20 19 23 23 H 1.08001 * 119.99384 * 150.16598 * 22 21 20 24 24 C 1.38807 * 120.00253 * 330.17451 * 22 21 20 25 25 N 1.31624 * 119.99956 * 344.48271 * 24 22 21 26 26 Si 1.86800 * 120.00159 * 164.49349 * 24 22 21 27 27 H 1.48498 * 109.47543 * 89.99055 * 26 24 22 28 28 H 1.48501 * 109.47170 * 209.99731 * 26 24 22 29 29 H 1.48503 * 109.46845 * 329.99106 * 26 24 22 30 30 H 1.09004 * 109.47023 * 180.27912 * 1 2 3 31 31 H 1.08997 * 109.46920 * 300.28101 * 1 2 3 32 32 H 1.09003 * 109.47262 * 60.28152 * 1 2 3 33 33 H 1.08995 * 109.49666 * 54.53569 * 4 2 1 34 34 H 1.09005 * 109.49343 * 294.44344 * 4 2 1 35 35 H 0.96998 * 119.99278 * 25.07037 * 7 5 4 36 36 H 1.07996 * 125.42454 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.49971 * 181.31578 * 19 5 4 38 38 H 1.09002 * 109.49507 * 301.41211 * 19 5 4 39 39 H 1.08998 * 109.58408 * 65.15900 * 20 19 5 40 40 H 1.08998 * 109.58614 * 185.43568 * 20 19 5 41 41 H 0.97002 * 119.99847 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7290 1.2444 5 6 3.5706 -0.8444 1.1672 6 1 4.0069 0.1520 1.0963 7 7 4.0712 -1.5117 2.3716 8 6 5.3349 -1.2947 2.7863 9 8 6.0605 -0.5447 2.1602 10 6 5.8365 -1.9634 3.9921 11 8 5.1491 -2.8146 4.7888 12 6 5.9645 -3.1931 5.7779 13 7 7.1240 -2.6117 5.6236 14 6 7.0834 -1.8433 4.5304 15 6 8.2097 -0.9997 3.9911 16 9 8.1455 0.2792 4.5545 17 9 9.4340 -1.5924 4.3182 18 9 8.0953 -0.9029 2.6002 19 6 3.9603 -1.6607 -0.0673 20 6 3.4653 -0.9423 -1.3266 21 7 2.0225 -0.6980 -1.1954 22 6 1.1533 -1.1132 -2.1687 23 1 0.1402 -1.3825 -1.9087 24 6 1.5743 -1.1881 -3.4893 25 7 2.6832 -0.5847 -3.8618 26 14 0.5670 -2.1450 -4.7379 27 1 -0.4297 -1.2415 -5.3669 28 1 1.4669 -2.6940 -5.7838 29 1 -0.1372 -3.2603 -4.0556 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5182 0.8874 32 1 -0.3634 0.5095 -0.8925 33 1 1.6080 -1.7257 1.2903 34 1 1.7689 -0.1673 2.1364 35 1 3.4929 -2.1098 2.8704 36 1 5.7059 -3.8715 6.5774 37 1 5.0447 -1.7623 -0.1088 38 1 3.5038 -2.6488 -0.0089 39 1 3.9885 0.0077 -1.4347 40 1 3.6547 -1.5652 -2.2008 41 1 2.9772 -0.6368 -4.7847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947572088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:14:31 Heat of formation + Delta-G solvation = -154.556980 kcal Electronic energy + Delta-G solvation = -31503.255939 eV Core-core repulsion = 26584.184136 eV Total energy + Delta-G solvation = -4919.071803 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.27148 -48.82223 -48.73045 -44.89951 -41.13178 -39.30592 -36.75920 -36.12236 -34.26070 -33.22449 -32.42590 -31.22360 -28.34760 -27.78239 -26.68955 -25.22372 -23.94881 -23.44357 -22.59142 -21.68420 -21.15373 -20.17894 -19.72853 -19.42648 -18.99438 -18.22286 -18.14227 -17.41001 -17.06624 -16.86098 -16.07944 -15.88324 -15.75707 -15.67017 -15.55888 -15.35671 -15.26577 -15.14618 -14.90834 -14.89241 -14.80893 -14.54995 -14.33018 -13.62324 -13.32558 -13.03680 -12.95694 -12.72594 -12.70626 -12.60519 -12.35517 -12.30021 -12.11137 -11.89170 -11.71979 -11.59131 -11.53444 -11.13059 -10.73744 -10.54300 -10.17826 -8.62582 -7.82717 -5.29108 -0.77539 0.84355 0.97964 1.36006 1.48392 1.50355 1.58898 1.64112 1.88480 2.33411 2.54121 2.64462 3.15218 3.27671 3.35240 3.51595 3.60847 3.72452 3.84381 4.01219 4.03060 4.24960 4.38800 4.61468 4.67021 4.75693 4.78374 4.80782 4.95829 5.04346 5.06149 5.16580 5.33027 5.40805 5.52902 5.57799 5.72831 5.75120 5.96754 6.25570 6.44924 6.82493 7.18959 7.90723 8.43192 9.24773 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.002697 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.355610 B =10379.508835 C =10932.147481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.013 0.987 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.068 0.932 7 N -0.685 5.685 8 C 0.588 3.412 9 O -0.525 6.525 10 C -0.030 4.030 11 O -0.164 6.164 12 C 0.255 3.745 13 N -0.495 5.495 14 C -0.042 4.042 15 C 0.545 3.455 16 F -0.172 7.172 17 F -0.168 7.168 18 F -0.152 7.152 19 C -0.132 4.132 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.249 4.249 23 H 0.080 0.920 24 C -0.055 4.055 25 N -0.940 5.940 26 Si 0.962 3.038 27 H -0.287 1.287 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.420 0.580 36 H 0.331 0.669 37 H 0.048 0.952 38 H 0.065 0.935 39 H -0.011 1.011 40 H 0.054 0.946 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -6.975 24.045 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.053 3.947 3 H 0.031 0.969 4 C -0.158 4.158 5 C 0.057 3.943 6 H 0.086 0.914 7 N -0.336 5.336 8 C 0.371 3.629 9 O -0.403 6.403 10 C -0.090 4.090 11 O -0.049 6.049 12 C 0.031 3.969 13 N -0.221 5.221 14 C -0.166 4.166 15 C 0.490 3.510 16 F -0.153 7.153 17 F -0.149 7.149 18 F -0.133 7.133 19 C -0.172 4.172 20 C 0.057 3.943 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.098 0.902 24 C -0.250 4.250 25 N -0.587 5.587 26 Si 0.790 3.210 27 H -0.214 1.214 28 H -0.226 1.226 29 H -0.190 1.190 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.257 0.743 36 H 0.345 0.655 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.047 -6.510 23.831 25.034 hybrid contribution -0.421 -0.209 -1.575 1.644 sum 3.627 -6.720 22.256 23.529 Atomic orbital electron populations 1.21710 0.93843 1.01755 1.01145 1.20642 0.94745 0.92975 0.86354 0.96949 1.22205 0.91832 1.02629 0.99090 1.20870 0.95436 0.95568 0.82435 0.91419 1.45907 1.11910 1.47547 1.28199 1.16597 0.83175 0.81470 0.81622 1.91048 1.56619 1.37291 1.55313 1.22693 0.91803 0.98325 0.96151 1.84636 1.41499 1.46773 1.32023 1.29959 0.80653 0.95731 0.90586 1.70210 1.25660 1.10619 1.15566 1.21550 0.94186 1.03385 0.97479 1.16956 0.80190 0.77556 0.76306 1.93221 1.96306 1.40731 1.85067 1.93218 1.45620 1.83599 1.92473 1.93394 1.95566 1.95970 1.28394 1.22336 0.99367 0.99720 0.95825 1.20429 0.83665 0.95554 0.94675 1.44437 1.02566 1.65674 1.20058 1.19529 0.95763 1.36110 0.86495 0.90203 1.25862 0.99097 1.01008 0.99038 1.70195 1.26199 1.45814 1.16465 0.85362 0.77780 0.78923 0.78907 1.21394 1.22645 1.19046 0.92530 0.90385 0.94261 0.90234 0.88856 0.74260 0.65502 0.93308 0.91657 0.99244 0.92797 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.96 71.98 0.57 -3.56 16 2 C 0.16 5.95 3.49 44.97 0.16 6.11 16 3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.12 -3.29 4.85 30.67 0.15 -3.14 16 5 C 0.16 4.97 2.42 45.01 0.11 5.08 16 6 H 0.07 2.43 7.57 -2.38 -0.02 2.42 16 7 N -0.69 -16.23 5.07 -446.34 -2.26 -18.49 16 8 C 0.59 16.07 7.70 86.46 0.67 16.73 16 9 O -0.53 -18.68 12.81 -4.32 -0.06 -18.73 16 10 C -0.03 -0.66 7.14 24.04 0.17 -0.48 16 11 O -0.16 -2.07 10.57 -7.10 -0.08 -2.14 16 12 C 0.26 1.95 13.21 130.42 1.72 3.67 16 13 N -0.49 -8.90 11.21 -303.13 -3.40 -12.30 16 14 C -0.04 -0.99 6.49 41.83 0.27 -0.72 16 15 C 0.55 15.09 3.33 71.24 0.24 15.32 16 16 F -0.17 -4.84 17.30 44.97 0.78 -4.07 16 17 F -0.17 -4.47 17.27 44.97 0.78 -3.69 16 18 F -0.15 -4.93 13.48 44.97 0.61 -4.33 16 19 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16 20 C 0.18 8.89 5.28 86.36 0.46 9.35 16 21 N -0.60 -28.72 2.99 -675.24 -2.02 -30.73 16 22 C -0.25 -12.91 8.57 84.03 0.72 -12.19 16 23 H 0.08 3.92 6.24 -2.91 -0.02 3.90 16 24 C -0.06 -3.03 4.94 84.86 0.42 -2.61 16 25 N -0.94 -55.94 11.23 21.65 0.24 -55.69 16 26 Si 0.96 44.11 29.58 68.60 2.03 46.14 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.06 1.81 7.43 -2.38 -0.02 1.79 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.45 7.63 -2.39 -0.02 1.44 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.42 6.94 8.40 -92.71 -0.78 6.16 16 36 H 0.33 -2.33 8.06 -2.91 -0.02 -2.35 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.53 350.65 2.77 -71.76 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 0.33 Total: 3.52 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 5.82 Total: 28.76 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.44 Total: -117.21 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.13 Total: -20.87 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 2.16 Total: -12.08 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -74.53 2.77 -71.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947572088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.797 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds