Wall clock time and date at job start Wed Apr 1 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44798 * 2 1 4 4 C 1.53036 * 109.46176 * 119.97071 * 2 1 3 5 5 C 1.53194 * 109.31264 * 181.38417 * 4 2 1 6 6 N 1.46923 * 108.77909 * 305.36703 * 5 4 2 7 7 C 1.36937 * 120.62967 * 233.63373 * 6 5 4 8 8 H 1.08000 * 120.00143 * 27.65846 * 7 6 5 9 9 C 1.38813 * 119.99812 * 207.66528 * 7 6 5 10 10 N 1.31617 * 120.00264 * 17.35256 * 9 7 6 11 11 Si 1.86800 * 119.99726 * 197.35818 * 9 7 6 12 12 H 1.48498 * 109.47215 * 60.00040 * 11 9 7 13 13 H 1.48502 * 109.46990 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47222 * 299.99545 * 11 9 7 15 15 C 1.46924 * 118.73897 * 53.60655 * 6 5 4 16 16 C 1.53047 * 109.46163 * 240.03874 * 2 1 3 17 17 H 1.08995 * 109.52129 * 298.58425 * 16 2 1 18 18 N 1.46501 * 109.49771 * 58.66037 * 16 2 1 19 19 C 1.34780 * 120.00399 * 204.84249 * 18 16 2 20 20 O 1.21587 * 119.99234 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00191 * 179.97438 * 19 18 16 22 22 C 1.36825 * 126.94288 * 179.97438 * 21 19 18 23 23 C 1.41261 * 103.84821 * 180.02562 * 22 21 19 24 24 C 1.50691 * 126.70741 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47068 * 89.99835 * 24 23 22 26 26 F 1.39896 * 109.47577 * 210.00321 * 24 23 22 27 27 F 1.39909 * 109.47076 * 330.00151 * 24 23 22 28 28 N 1.30134 * 106.58786 * 0.02562 * 23 22 21 29 29 O 1.20887 * 111.98216 * 0.02562 * 28 23 22 30 30 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 299.96307 * 1 2 3 32 32 H 1.09005 * 109.46886 * 59.96395 * 1 2 3 33 33 H 1.08993 * 109.50048 * 61.43509 * 4 2 1 34 34 H 1.08995 * 109.52142 * 301.34911 * 4 2 1 35 35 H 1.09002 * 109.58934 * 185.57427 * 5 4 2 36 36 H 1.08999 * 109.58401 * 65.15303 * 5 4 2 37 37 H 0.96997 * 119.99980 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58520 * 186.60950 * 15 6 5 39 39 H 1.08999 * 109.70475 * 66.25022 * 15 6 5 40 40 H 0.97002 * 119.99900 * 24.83918 * 18 16 2 41 41 H 1.08003 * 128.07029 * 0.25597 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2641 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2739 -0.0003 8 1 5.0086 -2.9662 0.8280 9 6 5.8540 -2.4232 -1.0649 10 7 6.0603 -1.4214 -1.8933 11 14 6.7429 -4.0459 -1.3218 12 1 5.7474 -5.1292 -1.5234 13 1 7.6162 -3.9478 -2.5189 14 1 7.5716 -4.3509 -0.1278 15 6 3.5714 -0.6884 -1.2644 16 6 2.0399 -0.7207 -1.2502 17 1 1.6978 -1.7555 -1.2391 18 7 1.5256 -0.0485 -2.4460 19 6 1.4001 -0.7311 -3.6014 20 8 1.7143 -1.9047 -3.6512 21 6 0.8817 -0.0545 -4.8053 22 6 0.6975 -0.6063 -6.0437 23 6 0.1883 0.4607 -6.8169 24 6 -0.1960 0.4144 -8.2732 25 9 -1.5435 0.0566 -8.3888 26 9 0.0030 1.6740 -8.8484 27 9 0.5958 -0.5306 -8.9347 28 7 0.1171 1.4917 -6.0260 29 8 0.4961 1.2314 -4.9080 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6979 -1.7556 1.2382 34 1 1.6573 -0.2213 2.1400 35 1 3.9418 -1.2846 2.0982 36 1 3.9143 0.3409 1.3673 37 1 6.6737 -1.5259 -2.6374 38 1 3.9417 -1.2843 -2.0986 39 1 3.9143 0.3409 -1.3700 40 1 1.2753 0.8878 -2.4063 41 1 0.8921 -1.6217 -6.3560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966887973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:05 Heat of formation + Delta-G solvation = -99.254879 kcal Electronic energy + Delta-G solvation = -31033.146553 eV Core-core repulsion = 26116.472829 eV Total energy + Delta-G solvation = -4916.673724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.61857 -48.13713 -48.11472 -45.68873 -39.85564 -37.79992 -35.16741 -34.48587 -33.35530 -32.49834 -31.04222 -29.08312 -27.65369 -27.46160 -24.76836 -24.02867 -23.48819 -22.16271 -21.18798 -20.82844 -19.83851 -19.13879 -18.99401 -18.61040 -18.17585 -17.48336 -16.90800 -16.26137 -15.90891 -15.05895 -14.97338 -14.92750 -14.57644 -14.52102 -14.38210 -14.24256 -14.23888 -14.04059 -13.81384 -13.65977 -13.45634 -13.17770 -12.95130 -12.50455 -12.39487 -12.11237 -11.76049 -11.67526 -11.36192 -10.95648 -10.82798 -10.73733 -10.54088 -10.40361 -10.22898 -10.20243 -10.00175 -9.82814 -9.60675 -8.82486 -8.48549 -6.73317 -5.81812 -3.24841 0.38219 1.12902 1.79692 2.22128 2.92787 2.95391 3.01260 3.39338 3.44130 3.46095 3.47945 3.84132 4.15005 4.25232 4.48960 4.61198 4.74468 5.05615 5.16680 5.28399 5.30813 5.42945 5.51381 5.81156 5.90744 5.93710 6.01097 6.14906 6.26506 6.34174 6.39094 6.57015 6.63545 6.73871 6.89495 7.09883 7.25568 7.56842 7.60954 7.78015 8.09234 8.41462 9.16533 9.80394 10.34684 11.26433 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003018 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.913765 B = 9274.845362 C =10888.707397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.900 5.900 11 Si 0.902 3.098 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.164 3.836 16 C 0.121 3.879 17 H 0.089 0.911 18 N -0.696 5.696 19 C 0.598 3.402 20 O -0.493 6.493 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.088 4.088 24 C 0.562 3.438 25 F -0.164 7.164 26 F -0.163 7.163 27 F -0.159 7.159 28 N -0.294 5.294 29 O 0.152 5.848 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.096 0.904 39 H 0.021 0.979 40 H 0.400 0.600 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.843 6.090 -6.610 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.037 3.963 16 C 0.017 3.983 17 H 0.107 0.893 18 N -0.346 5.346 19 C 0.378 3.622 20 O -0.367 6.367 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.246 4.246 24 C 0.506 3.494 25 F -0.145 7.145 26 F -0.144 7.144 27 F -0.140 7.140 28 N 0.015 4.985 29 O 0.067 5.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.039 0.961 40 H 0.235 0.765 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.887 6.481 -7.040 17.697 hybrid contribution 0.489 -0.990 -0.645 1.278 sum -14.398 5.492 -7.685 17.220 Atomic orbital electron populations 1.21877 0.95841 1.01692 1.00972 1.21317 0.94693 0.99858 0.95278 0.91159 1.22073 0.98938 1.00104 0.95378 1.20985 0.90788 0.96599 0.90154 1.43932 1.48060 1.39846 0.99078 1.19112 1.09897 1.03279 1.06499 0.91531 1.25025 0.97065 0.97408 0.99623 1.69994 1.37481 1.29102 1.17745 0.86375 0.79209 0.83915 0.77317 1.20824 1.21604 1.20861 1.21120 0.85955 0.97855 0.91363 1.22252 0.98816 0.96519 0.80738 0.89331 1.46024 1.64075 1.14498 1.10021 1.16384 0.79183 0.85881 0.80714 1.90963 1.48793 1.14281 1.82681 1.24743 1.04536 0.83976 0.98713 1.22685 0.99650 1.01729 0.90139 1.23391 1.10732 0.93417 0.97034 1.16574 0.75035 0.74473 0.83308 1.93272 1.33165 1.91708 1.96361 1.93264 1.94705 1.40550 1.85914 1.93274 1.73958 1.64864 1.81903 1.73797 1.11670 1.22039 0.90985 1.85020 1.57574 1.26790 1.23913 0.92809 0.92896 0.93183 0.91988 0.92407 0.92482 0.96274 0.93518 0.88553 0.96133 0.76510 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.02 37.16 0.34 -1.34 16 2 C -0.09 -1.31 2.27 -90.58 -0.21 -1.52 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -1.92 5.36 -26.61 -0.14 -2.07 16 5 C 0.14 2.73 6.52 -3.71 -0.02 2.71 16 6 N -0.59 -14.04 2.99 -172.32 -0.52 -14.55 16 7 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 10 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 11 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.16 3.70 4.89 -3.71 -0.02 3.68 16 16 C 0.12 2.10 2.06 -67.81 -0.14 1.96 16 17 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 18 N -0.70 -9.90 4.37 -54.74 -0.24 -10.14 16 19 C 0.60 9.16 7.78 -12.48 -0.10 9.07 16 20 O -0.49 -9.55 16.58 5.29 0.09 -9.46 16 21 C -0.05 -0.68 7.29 -36.32 -0.26 -0.94 16 22 C -0.12 -1.38 10.65 -38.95 -0.41 -1.79 16 23 C -0.09 -1.01 6.63 -82.17 -0.54 -1.56 16 24 C 0.56 5.88 3.56 36.00 0.13 6.01 16 25 F -0.16 -1.68 17.30 2.25 0.04 -1.65 16 26 F -0.16 -1.80 17.27 2.25 0.04 -1.76 16 27 F -0.16 -1.62 17.08 2.25 0.04 -1.58 16 28 N -0.29 -3.58 12.00 33.52 0.40 -3.18 16 29 O 0.15 1.76 11.04 15.56 0.17 1.93 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.40 4.45 8.13 -40.82 -0.33 4.12 16 41 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -30.15 359.52 -5.35 -35.50 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.76 Total: 0.68 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.62 Total: 7.25 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.27 Total: -53.09 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.26 Total: -7.53 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.12 Total: -4.99 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.15 -5.35 -35.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966887973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.752 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds