Wall clock time and date at job start Wed Apr 1 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.44798 * 2 1 4 4 C 1.53036 * 109.46176 * 119.97071 * 2 1 3 5 5 C 1.53194 * 109.31264 * 181.38417 * 4 2 1 6 6 N 1.46923 * 108.77909 * 305.36703 * 5 4 2 7 7 C 1.36937 * 120.62967 * 233.63373 * 6 5 4 8 8 H 1.08000 * 120.00143 * 27.65846 * 7 6 5 9 9 C 1.38813 * 119.99812 * 207.66528 * 7 6 5 10 10 N 1.31617 * 120.00264 * 17.35256 * 9 7 6 11 11 Si 1.86800 * 119.99726 * 197.35818 * 9 7 6 12 12 H 1.48498 * 109.47215 * 60.00040 * 11 9 7 13 13 H 1.48502 * 109.46990 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47222 * 299.99545 * 11 9 7 15 15 C 1.46924 * 118.73897 * 53.60655 * 6 5 4 16 16 C 1.53047 * 109.46163 * 240.03874 * 2 1 3 17 17 H 1.08995 * 109.52129 * 298.58425 * 16 2 1 18 18 N 1.46501 * 109.49771 * 58.66037 * 16 2 1 19 19 C 1.34780 * 120.00399 * 204.84249 * 18 16 2 20 20 O 1.21587 * 119.99234 * 359.97438 * 19 18 16 21 21 C 1.47511 * 120.00191 * 179.97438 * 19 18 16 22 22 C 1.36825 * 126.94288 * 179.97438 * 21 19 18 23 23 C 1.41261 * 103.84821 * 180.02562 * 22 21 19 24 24 C 1.50691 * 126.70741 * 179.97438 * 23 22 21 25 25 F 1.39900 * 109.47068 * 89.99835 * 24 23 22 26 26 F 1.39896 * 109.47577 * 210.00321 * 24 23 22 27 27 F 1.39909 * 109.47076 * 330.00151 * 24 23 22 28 28 N 1.30134 * 106.58786 * 0.02562 * 23 22 21 29 29 O 1.20887 * 111.98216 * 0.02562 * 28 23 22 30 30 H 1.08997 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 299.96307 * 1 2 3 32 32 H 1.09005 * 109.46886 * 59.96395 * 1 2 3 33 33 H 1.08993 * 109.50048 * 61.43509 * 4 2 1 34 34 H 1.08995 * 109.52142 * 301.34911 * 4 2 1 35 35 H 1.09002 * 109.58934 * 185.57427 * 5 4 2 36 36 H 1.08999 * 109.58401 * 65.15303 * 5 4 2 37 37 H 0.96997 * 119.99980 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58520 * 186.60950 * 15 6 5 39 39 H 1.08999 * 109.70475 * 66.25022 * 15 6 5 40 40 H 0.97002 * 119.99900 * 24.83918 * 18 16 2 41 41 H 1.08003 * 128.07029 * 0.25597 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 6 3.5714 -0.6886 1.2641 6 7 4.0679 -1.2487 -0.0002 7 6 4.9758 -2.2739 -0.0003 8 1 5.0086 -2.9662 0.8280 9 6 5.8540 -2.4232 -1.0649 10 7 6.0603 -1.4214 -1.8933 11 14 6.7429 -4.0459 -1.3218 12 1 5.7474 -5.1292 -1.5234 13 1 7.6162 -3.9478 -2.5189 14 1 7.5716 -4.3509 -0.1278 15 6 3.5714 -0.6884 -1.2644 16 6 2.0399 -0.7207 -1.2502 17 1 1.6978 -1.7555 -1.2391 18 7 1.5256 -0.0485 -2.4460 19 6 1.4001 -0.7311 -3.6014 20 8 1.7143 -1.9047 -3.6512 21 6 0.8817 -0.0545 -4.8053 22 6 0.6975 -0.6063 -6.0437 23 6 0.1883 0.4607 -6.8169 24 6 -0.1960 0.4144 -8.2732 25 9 -1.5435 0.0566 -8.3888 26 9 0.0030 1.6740 -8.8484 27 9 0.5958 -0.5306 -8.9347 28 7 0.1171 1.4917 -6.0260 29 8 0.4961 1.2314 -4.9080 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5132 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 1.6979 -1.7556 1.2382 34 1 1.6573 -0.2213 2.1400 35 1 3.9418 -1.2846 2.0982 36 1 3.9143 0.3409 1.3673 37 1 6.6737 -1.5259 -2.6374 38 1 3.9417 -1.2843 -2.0986 39 1 3.9143 0.3409 -1.3700 40 1 1.2753 0.8878 -2.4063 41 1 0.8921 -1.6217 -6.3560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966887973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:03 Heat of formation + Delta-G solvation = -118.069969 kcal Electronic energy + Delta-G solvation = -31033.962437 eV Core-core repulsion = 26116.472829 eV Total energy + Delta-G solvation = -4917.489607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -51.46365 -48.97719 -48.95989 -46.66570 -41.19234 -39.24575 -36.32157 -35.91212 -34.80395 -33.58968 -32.78315 -30.57246 -28.97254 -28.54722 -26.18688 -25.52878 -24.50862 -23.46735 -22.63824 -21.99385 -21.24373 -20.09182 -20.00924 -19.59605 -19.13098 -18.73834 -18.41727 -17.42682 -17.28082 -16.79125 -16.06198 -15.81348 -15.79952 -15.69836 -15.39934 -15.35701 -15.24034 -15.13493 -15.07931 -15.01749 -14.88721 -14.50196 -14.06575 -13.85901 -13.57736 -13.34420 -13.26512 -13.03371 -12.68936 -12.55907 -12.34878 -12.29924 -12.19072 -11.91073 -11.72502 -11.61059 -11.26706 -11.21810 -11.17401 -10.52635 -10.24617 -8.67590 -7.88034 -5.32740 -0.64590 0.17045 0.89587 1.14758 1.44281 1.49092 1.53756 1.74296 1.91685 2.06457 2.44975 2.52208 2.99597 3.20458 3.28466 3.30911 3.58228 3.66645 3.80271 3.86062 4.02916 4.17635 4.38462 4.48987 4.59179 4.70239 4.76435 4.95866 5.01919 5.11160 5.18042 5.22601 5.27708 5.36338 5.49038 5.55954 5.64250 5.78001 6.12725 6.38178 6.45868 6.90696 7.14699 7.86947 8.35440 9.16845 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012644 B = 0.003018 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.913765 B = 9274.845362 C =10888.707397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.068 0.932 9 C -0.046 4.046 10 N -0.930 5.930 11 Si 0.958 3.042 12 H -0.283 1.283 13 H -0.295 1.295 14 H -0.271 1.271 15 C 0.174 3.826 16 C 0.139 3.861 17 H 0.064 0.936 18 N -0.685 5.685 19 C 0.602 3.398 20 O -0.539 6.539 21 C -0.061 4.061 22 C -0.108 4.108 23 C -0.089 4.089 24 C 0.568 3.432 25 F -0.160 7.160 26 F -0.165 7.165 27 F -0.156 7.156 28 N -0.299 5.299 29 O 0.166 5.834 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.248 0.752 38 H 0.049 0.951 39 H 0.003 0.997 40 H 0.419 0.581 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.816 6.902 -6.106 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.395 4.395 8 H 0.086 0.914 9 C -0.242 4.242 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.196 1.196 15 C 0.047 3.953 16 C 0.033 3.967 17 H 0.083 0.917 18 N -0.335 5.335 19 C 0.385 3.615 20 O -0.416 6.416 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.246 4.246 24 C 0.513 3.487 25 F -0.142 7.142 26 F -0.147 7.147 27 F -0.137 7.137 28 N 0.012 4.988 29 O 0.078 5.922 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.021 0.979 40 H 0.257 0.743 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.902 7.338 -6.519 19.545 hybrid contribution 1.094 -1.187 -0.790 1.797 sum -15.807 6.151 -7.309 18.470 Atomic orbital electron populations 1.21804 0.92870 1.01933 1.02926 1.21290 0.96999 0.99564 0.92639 0.90001 1.21964 0.95524 1.00422 0.97551 1.21192 0.93689 0.96181 0.87981 1.44211 1.48122 1.39802 1.01019 1.19454 1.09801 1.03974 1.06225 0.91441 1.25711 0.98474 1.00060 0.99922 1.70145 1.38485 1.30696 1.18230 0.85476 0.78119 0.80531 0.77210 1.20916 1.22156 1.19602 1.20841 0.89427 0.95477 0.89553 1.21730 0.95102 0.96401 0.83468 0.91741 1.45802 1.63361 1.15281 1.09086 1.16564 0.78205 0.85397 0.81348 1.90944 1.50729 1.16360 1.83562 1.24129 1.05972 0.84612 0.97926 1.22918 0.98155 1.02333 0.89622 1.23508 1.10544 0.93050 0.97498 1.16412 0.75131 0.74423 0.82734 1.93281 1.32932 1.91664 1.96297 1.93262 1.94739 1.40780 1.85876 1.93285 1.73918 1.64725 1.81763 1.73779 1.11622 1.22257 0.91173 1.85025 1.57339 1.26047 1.23755 0.93442 0.90489 0.91743 0.92817 0.88624 0.92710 0.96058 0.94341 0.93264 0.97878 0.74349 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.02 71.98 0.65 -2.00 16 2 C -0.09 -2.24 2.27 -10.77 -0.02 -2.27 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -3.27 5.36 30.67 0.16 -3.11 16 5 C 0.13 5.11 6.52 86.36 0.56 5.68 16 6 N -0.61 -29.67 2.99 -699.10 -2.09 -31.77 16 7 C -0.26 -14.54 9.58 84.03 0.81 -13.73 16 8 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 9 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 10 N -0.93 -55.59 11.19 21.65 0.24 -55.34 16 11 Si 0.96 45.92 29.59 68.60 2.03 47.95 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.17 8.10 4.89 86.36 0.42 8.53 16 16 C 0.14 4.77 2.06 45.07 0.09 4.87 16 17 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 18 N -0.68 -19.04 4.37 -445.35 -1.95 -20.99 16 19 C 0.60 18.47 7.78 86.69 0.67 19.14 16 20 O -0.54 -21.47 16.58 -3.99 -0.07 -21.54 16 21 C -0.06 -1.46 7.29 24.39 0.18 -1.28 16 22 C -0.11 -2.36 10.65 22.68 0.24 -2.11 16 23 C -0.09 -1.89 6.63 43.55 0.29 -1.61 16 24 C 0.57 10.97 3.56 71.23 0.25 11.23 16 25 F -0.16 -3.02 17.30 44.97 0.78 -2.24 16 26 F -0.17 -3.39 17.27 44.97 0.78 -2.62 16 27 F -0.16 -2.93 17.08 44.97 0.77 -2.16 16 28 N -0.30 -6.75 12.00 -48.86 -0.59 -7.33 16 29 O 0.17 3.55 11.04 65.86 0.73 4.27 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.07 7.36 -2.38 -0.02 1.05 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.05 2.76 6.03 -2.39 -0.01 2.75 16 39 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 40 H 0.42 8.55 8.13 -92.71 -0.75 7.80 16 41 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -68.07 359.52 5.70 -62.37 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.35 Total: 8.26 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 4.73 Total: 21.14 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -4.38 Total: -115.44 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.66 Total: -17.27 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 2.32 Total: -7.02 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -68.07 5.70 -62.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966887973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.705 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds