Wall clock time and date at job start Wed Apr 1 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.44971 * 2 1 4 4 C 1.53035 * 109.45953 * 240.02892 * 2 1 3 5 5 C 1.53190 * 109.31446 * 178.61237 * 4 2 1 6 6 N 1.46933 * 108.77259 * 54.64083 * 5 4 2 7 7 C 1.36933 * 120.63445 * 126.41246 * 6 5 4 8 8 H 1.08003 * 119.99737 * 331.80874 * 7 6 5 9 9 C 1.38806 * 120.00246 * 151.80827 * 7 6 5 10 10 N 1.31616 * 120.00279 * 343.08484 * 9 7 6 11 11 Si 1.86803 * 120.00162 * 163.08824 * 9 7 6 12 12 H 1.48500 * 109.47056 * 59.99817 * 11 9 7 13 13 H 1.48498 * 109.47554 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47047 * 299.99995 * 11 9 7 15 15 C 1.46933 * 118.73690 * 306.39334 * 6 5 4 16 16 C 1.53044 * 109.45814 * 119.96502 * 2 1 3 17 17 H 1.09002 * 109.52543 * 61.41374 * 16 2 1 18 18 N 1.46496 * 109.49800 * 301.33784 * 16 2 1 19 19 C 1.34774 * 120.00295 * 155.43969 * 18 16 2 20 20 O 1.21587 * 119.99993 * 359.72278 * 19 18 16 21 21 C 1.47509 * 120.00254 * 179.72204 * 19 18 16 22 22 C 1.36825 * 126.94306 * 179.97438 * 21 19 18 23 23 C 1.41263 * 103.84850 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.70977 * 179.97438 * 23 22 21 25 25 F 1.39895 * 109.47006 * 90.00079 * 24 23 22 26 26 F 1.39898 * 109.47307 * 210.00405 * 24 23 22 27 27 F 1.39898 * 109.46793 * 330.00117 * 24 23 22 28 28 N 1.30133 * 106.59041 * 0.02562 * 23 22 21 29 29 O 1.20889 * 111.97605 * 359.69806 * 28 23 22 30 30 H 1.09003 * 109.47222 * 300.03780 * 1 2 3 31 31 H 1.09002 * 109.47053 * 60.03550 * 1 2 3 32 32 H 1.09003 * 109.47606 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49530 * 58.66444 * 4 2 1 34 34 H 1.08999 * 109.52904 * 298.58538 * 4 2 1 35 35 H 1.08994 * 109.59270 * 294.86020 * 5 4 2 36 36 H 1.08993 * 109.70810 * 174.49122 * 5 4 2 37 37 H 0.97003 * 120.00289 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.58435 * 293.81592 * 15 6 5 39 39 H 1.08998 * 109.58323 * 173.39483 * 15 6 5 40 40 H 0.96999 * 119.99956 * 335.15757 * 18 16 2 41 41 H 1.07996 * 128.08065 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2489 0.0001 7 6 4.9763 -2.2735 0.0002 8 1 5.0041 -2.9706 -0.8243 9 6 5.8615 -2.4161 1.0598 10 7 6.0661 -1.4123 1.8861 11 14 6.7627 -4.0327 1.3129 12 1 7.5864 -4.3332 0.1144 13 1 7.6430 -3.9275 2.5042 14 1 5.7755 -5.1224 1.5210 15 6 3.5713 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2501 17 1 1.6977 -1.7556 1.2390 18 7 1.5255 -0.0487 2.4459 19 6 1.4053 -0.7298 3.6027 20 8 1.7190 -1.9035 3.6525 21 6 0.8932 -0.0515 4.8083 22 6 0.7139 -0.6020 6.0480 23 6 0.2084 0.4660 6.8223 24 6 -0.1709 0.4211 8.2801 25 9 0.9417 0.7496 9.0618 26 9 -1.1988 1.3384 8.5230 27 9 -0.6079 -0.8667 8.6087 28 7 0.1333 1.4960 6.0305 29 8 0.5120 1.2356 4.9124 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6572 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2388 35 1 3.9143 0.3408 -1.3672 36 1 3.9437 -1.2831 -2.0984 37 1 6.6850 -1.5119 2.6264 38 1 3.9143 0.3408 1.3675 39 1 3.9416 -1.2846 2.0985 40 1 1.2753 0.8876 2.4063 41 1 0.9117 -1.6164 6.3613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966887974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:10 Heat of formation + Delta-G solvation = -99.421171 kcal Electronic energy + Delta-G solvation = -31031.717035 eV Core-core repulsion = 26115.036100 eV Total energy + Delta-G solvation = -4916.680935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.61932 -48.14453 -48.10818 -45.68728 -39.85599 -37.79893 -35.16588 -34.48486 -33.35469 -32.49752 -31.04221 -29.08314 -27.65253 -27.45984 -24.76823 -24.02809 -23.48751 -22.16281 -21.18756 -20.82802 -19.83814 -19.13251 -18.99863 -18.61344 -18.17371 -17.48219 -16.90597 -16.26096 -15.90899 -15.06047 -14.97475 -14.92148 -14.58397 -14.52118 -14.37656 -14.24134 -14.23988 -14.04008 -13.81359 -13.65815 -13.45478 -13.17766 -12.95023 -12.50528 -12.39440 -12.11058 -11.75920 -11.67565 -11.36076 -10.95371 -10.82710 -10.73960 -10.54336 -10.40462 -10.22845 -10.20130 -10.00568 -9.82713 -9.60643 -8.82444 -8.48789 -6.72557 -5.81797 -3.25433 0.38297 1.13021 1.79730 2.22191 2.92850 2.95332 3.01386 3.39264 3.44086 3.45936 3.47760 3.84494 4.14994 4.25329 4.48844 4.61270 4.74538 5.05639 5.16682 5.28528 5.30932 5.43087 5.51282 5.81184 5.90824 5.93803 6.01108 6.14953 6.26484 6.34235 6.39124 6.57080 6.63730 6.74011 6.89722 7.09945 7.25652 7.56879 7.60631 7.78008 8.09260 8.41751 9.16582 9.80265 10.34867 11.26439 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.003018 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.814251 B = 9273.918012 C =10890.771626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.900 5.900 11 Si 0.903 3.097 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.165 3.835 16 C 0.121 3.879 17 H 0.089 0.911 18 N -0.696 5.696 19 C 0.598 3.402 20 O -0.493 6.493 21 C -0.054 4.054 22 C -0.119 4.119 23 C -0.088 4.088 24 C 0.562 3.438 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.160 7.160 28 N -0.294 5.294 29 O 0.152 5.848 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.057 0.943 37 H 0.255 0.745 38 H 0.021 0.979 39 H 0.096 0.904 40 H 0.400 0.600 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.835 6.075 6.633 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.037 3.963 16 C 0.017 3.983 17 H 0.107 0.893 18 N -0.346 5.346 19 C 0.378 3.622 20 O -0.367 6.367 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.246 4.246 24 C 0.506 3.494 25 F -0.143 7.143 26 F -0.145 7.145 27 F -0.141 7.141 28 N 0.015 4.985 29 O 0.067 5.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.114 0.886 40 H 0.235 0.765 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.883 6.466 7.061 17.697 hybrid contribution 0.509 -0.983 0.645 1.281 sum -14.374 5.483 7.706 17.207 Atomic orbital electron populations 1.21878 0.95838 1.01693 1.00972 1.21313 0.94695 0.99855 0.95270 0.91157 1.22071 0.98925 1.00100 0.95378 1.20984 0.90778 0.96606 0.90163 1.43934 1.48036 1.39881 0.99072 1.19106 1.09606 1.03162 1.06925 0.91562 1.25038 0.97033 0.97386 0.99639 1.69990 1.37250 1.29068 1.18022 0.86373 0.79260 0.83843 0.77321 1.20862 1.21602 1.20811 1.21124 0.85951 0.97836 0.91348 1.22252 0.98813 0.96524 0.80746 0.89330 1.46023 1.64108 1.14556 1.09930 1.16382 0.79177 0.85887 0.80711 1.90963 1.48722 1.14264 1.82772 1.24743 1.04604 0.83909 0.98706 1.22684 0.99696 1.01695 0.90131 1.23395 1.10791 0.93473 0.96919 1.16573 0.75091 0.74401 0.83323 1.93283 1.52564 1.92328 1.76159 1.93259 1.59543 1.66689 1.95015 1.93263 1.89591 1.38034 1.93205 1.73799 1.11578 1.22112 0.91002 1.85020 1.57661 1.26681 1.23941 0.93180 0.92899 0.92808 0.92414 0.91986 0.96295 0.92480 0.93516 0.96124 0.88596 0.76510 0.78455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.02 37.16 0.34 -1.34 16 2 C -0.09 -1.31 2.27 -90.58 -0.21 -1.52 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -1.92 5.36 -26.61 -0.14 -2.06 16 5 C 0.14 2.73 6.52 -3.71 -0.02 2.71 16 6 N -0.59 -14.04 2.99 -172.32 -0.52 -14.56 16 7 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 10 N -0.90 -25.84 11.20 55.49 0.62 -25.22 16 11 Si 0.90 21.77 29.59 -169.99 -5.03 16.75 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.16 3.71 4.87 -3.71 -0.02 3.69 16 16 C 0.12 2.09 2.06 -67.81 -0.14 1.95 16 17 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 18 N -0.70 -9.90 4.37 -54.74 -0.24 -10.14 16 19 C 0.60 9.17 7.78 -12.48 -0.10 9.07 16 20 O -0.49 -9.55 16.58 5.29 0.09 -9.46 16 21 C -0.05 -0.68 7.29 -36.32 -0.26 -0.94 16 22 C -0.12 -1.38 10.65 -38.94 -0.41 -1.79 16 23 C -0.09 -1.02 6.63 -82.16 -0.54 -1.56 16 24 C 0.56 5.89 3.56 36.01 0.13 6.01 16 25 F -0.16 -1.76 17.30 2.25 0.04 -1.72 16 26 F -0.16 -1.77 17.27 2.25 0.04 -1.73 16 27 F -0.16 -1.58 17.08 2.25 0.04 -1.54 16 28 N -0.29 -3.58 12.00 33.52 0.40 -3.18 16 29 O 0.15 1.76 11.04 15.56 0.17 1.93 16 30 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 2.56 6.06 -51.93 -0.31 2.25 16 40 H 0.40 4.45 8.13 -40.82 -0.33 4.12 16 41 H 0.20 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -30.15 359.55 -5.35 -35.50 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.77 Total: 0.67 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.62 Total: 7.27 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.27 Total: -53.09 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: 0.26 Total: -7.53 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.12 Total: -4.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.15 -5.35 -35.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966887974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.922 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds