Wall clock time and date at job start Wed Apr 1 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.44971 * 2 1 4 4 C 1.53035 * 109.45953 * 240.02892 * 2 1 3 5 5 C 1.53190 * 109.31446 * 178.61237 * 4 2 1 6 6 N 1.46933 * 108.77259 * 54.64083 * 5 4 2 7 7 C 1.36933 * 120.63445 * 126.41246 * 6 5 4 8 8 H 1.08003 * 119.99737 * 331.80874 * 7 6 5 9 9 C 1.38806 * 120.00246 * 151.80827 * 7 6 5 10 10 N 1.31616 * 120.00279 * 343.08484 * 9 7 6 11 11 Si 1.86803 * 120.00162 * 163.08824 * 9 7 6 12 12 H 1.48500 * 109.47056 * 59.99817 * 11 9 7 13 13 H 1.48498 * 109.47554 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47047 * 299.99995 * 11 9 7 15 15 C 1.46933 * 118.73690 * 306.39334 * 6 5 4 16 16 C 1.53044 * 109.45814 * 119.96502 * 2 1 3 17 17 H 1.09002 * 109.52543 * 61.41374 * 16 2 1 18 18 N 1.46496 * 109.49800 * 301.33784 * 16 2 1 19 19 C 1.34774 * 120.00295 * 155.43969 * 18 16 2 20 20 O 1.21587 * 119.99993 * 359.72278 * 19 18 16 21 21 C 1.47509 * 120.00254 * 179.72204 * 19 18 16 22 22 C 1.36825 * 126.94306 * 179.97438 * 21 19 18 23 23 C 1.41263 * 103.84850 * 180.02562 * 22 21 19 24 24 C 1.50702 * 126.70977 * 179.97438 * 23 22 21 25 25 F 1.39895 * 109.47006 * 90.00079 * 24 23 22 26 26 F 1.39898 * 109.47307 * 210.00405 * 24 23 22 27 27 F 1.39898 * 109.46793 * 330.00117 * 24 23 22 28 28 N 1.30133 * 106.59041 * 0.02562 * 23 22 21 29 29 O 1.20889 * 111.97605 * 359.69806 * 28 23 22 30 30 H 1.09003 * 109.47222 * 300.03780 * 1 2 3 31 31 H 1.09002 * 109.47053 * 60.03550 * 1 2 3 32 32 H 1.09003 * 109.47606 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49530 * 58.66444 * 4 2 1 34 34 H 1.08999 * 109.52904 * 298.58538 * 4 2 1 35 35 H 1.08994 * 109.59270 * 294.86020 * 5 4 2 36 36 H 1.08993 * 109.70810 * 174.49122 * 5 4 2 37 37 H 0.97003 * 120.00289 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.58435 * 293.81592 * 15 6 5 39 39 H 1.08998 * 109.58323 * 173.39483 * 15 6 5 40 40 H 0.96999 * 119.99956 * 335.15757 * 18 16 2 41 41 H 1.07996 * 128.08065 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2489 0.0001 7 6 4.9763 -2.2735 0.0002 8 1 5.0041 -2.9706 -0.8243 9 6 5.8615 -2.4161 1.0598 10 7 6.0661 -1.4123 1.8861 11 14 6.7627 -4.0327 1.3129 12 1 7.5864 -4.3332 0.1144 13 1 7.6430 -3.9275 2.5042 14 1 5.7755 -5.1224 1.5210 15 6 3.5713 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2501 17 1 1.6977 -1.7556 1.2390 18 7 1.5255 -0.0487 2.4459 19 6 1.4053 -0.7298 3.6027 20 8 1.7190 -1.9035 3.6525 21 6 0.8932 -0.0515 4.8083 22 6 0.7139 -0.6020 6.0480 23 6 0.2084 0.4660 6.8223 24 6 -0.1709 0.4211 8.2801 25 9 0.9417 0.7496 9.0618 26 9 -1.1988 1.3384 8.5230 27 9 -0.6079 -0.8667 8.6087 28 7 0.1333 1.4960 6.0305 29 8 0.5120 1.2356 4.9124 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0277 0.0005 33 1 1.6572 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2388 35 1 3.9143 0.3408 -1.3672 36 1 3.9437 -1.2831 -2.0984 37 1 6.6850 -1.5119 2.6264 38 1 3.9143 0.3408 1.3675 39 1 3.9416 -1.2846 2.0985 40 1 1.2753 0.8876 2.4063 41 1 0.9117 -1.6164 6.3613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966887974.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:09 Heat of formation + Delta-G solvation = -118.235107 kcal Electronic energy + Delta-G solvation = -31032.532869 eV Core-core repulsion = 26115.036100 eV Total energy + Delta-G solvation = -4917.496768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -51.46463 -48.97333 -48.96532 -46.66486 -41.19281 -39.24488 -36.32086 -35.91121 -34.80347 -33.58922 -32.78394 -30.57258 -28.97113 -28.54650 -26.18676 -25.52891 -24.50841 -23.46743 -22.63877 -21.99326 -21.24415 -20.09266 -20.00810 -19.59747 -19.13071 -18.73619 -18.41712 -17.42745 -17.28070 -16.79144 -16.06092 -15.81109 -15.80427 -15.69906 -15.39666 -15.35704 -15.23801 -15.13570 -15.08027 -15.01538 -14.88764 -14.50137 -14.06705 -13.85837 -13.57645 -13.34388 -13.26389 -13.03311 -12.68892 -12.55997 -12.35189 -12.29927 -12.18962 -11.91178 -11.72640 -11.61060 -11.26675 -11.21802 -11.17274 -10.53056 -10.24511 -8.66889 -7.88003 -5.33374 -0.64576 0.17063 0.89584 1.14769 1.44346 1.48916 1.53755 1.74317 1.91809 2.06474 2.45122 2.52151 2.99354 3.20597 3.28556 3.30981 3.58251 3.66711 3.80205 3.86118 4.02880 4.17670 4.38509 4.48985 4.59250 4.70264 4.76445 4.95931 5.01934 5.11212 5.18125 5.22707 5.27756 5.36330 5.49064 5.55805 5.64285 5.77697 6.12753 6.38364 6.45910 6.90697 7.14772 7.86800 8.35584 9.16842 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.003018 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.814251 B = 9273.918012 C =10890.771626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 H 0.082 0.918 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.608 5.608 7 C -0.264 4.264 8 H 0.068 0.932 9 C -0.046 4.046 10 N -0.930 5.930 11 Si 0.959 3.041 12 H -0.271 1.271 13 H -0.295 1.295 14 H -0.283 1.283 15 C 0.175 3.825 16 C 0.139 3.861 17 H 0.064 0.936 18 N -0.685 5.685 19 C 0.602 3.398 20 O -0.539 6.539 21 C -0.061 4.061 22 C -0.108 4.108 23 C -0.089 4.089 24 C 0.568 3.432 25 F -0.164 7.164 26 F -0.164 7.164 27 F -0.154 7.154 28 N -0.299 5.299 29 O 0.165 5.835 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.248 0.752 38 H 0.003 0.997 39 H 0.048 0.952 40 H 0.419 0.581 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.811 6.878 6.133 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.100 0.900 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.395 4.395 8 H 0.085 0.915 9 C -0.241 4.241 10 N -0.576 5.576 11 Si 0.787 3.213 12 H -0.196 1.196 13 H -0.221 1.221 14 H -0.209 1.209 15 C 0.047 3.953 16 C 0.033 3.967 17 H 0.083 0.917 18 N -0.335 5.335 19 C 0.385 3.615 20 O -0.416 6.416 21 C -0.126 4.126 22 C -0.130 4.130 23 C -0.246 4.246 24 C 0.513 3.487 25 F -0.145 7.145 26 F -0.145 7.145 27 F -0.135 7.135 28 N 0.012 4.988 29 O 0.078 5.922 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.021 0.979 39 H 0.067 0.933 40 H 0.256 0.744 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.901 7.313 6.544 19.543 hybrid contribution 1.114 -1.178 0.789 1.804 sum -15.786 6.135 7.333 18.456 Atomic orbital electron populations 1.21804 0.92862 1.01937 1.02926 1.21286 0.97004 0.99558 0.92632 0.90005 1.21962 0.95505 1.00425 0.97552 1.21190 0.93684 0.96176 0.87989 1.44213 1.48105 1.39836 1.01010 1.19447 1.09527 1.03861 1.06639 0.91481 1.25725 0.98451 1.00035 0.99937 1.70142 1.38227 1.30672 1.18519 0.85472 0.78138 0.80476 0.77220 1.19616 1.22141 1.20889 1.20842 0.89425 0.95453 0.89534 1.21731 0.95095 0.96409 0.83474 0.91733 1.45801 1.63391 1.15338 1.08993 1.16562 0.78193 0.85405 0.81351 1.90944 1.50655 1.16342 1.83650 1.24131 1.06047 0.84540 0.97915 1.22917 0.98200 1.02299 0.89617 1.23513 1.10601 0.93105 0.97382 1.16411 0.74989 0.74578 0.82723 1.93284 1.52713 1.92374 1.76114 1.93262 1.59528 1.66766 1.94958 1.93279 1.89504 1.37641 1.93095 1.73781 1.11529 1.22330 0.91192 1.85024 1.57427 1.25938 1.23787 0.91739 0.90493 0.93436 0.88631 0.92805 0.96095 0.92719 0.94336 0.97877 0.93313 0.74350 0.77112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.02 71.98 0.65 -2.00 16 2 C -0.09 -2.24 2.27 -10.77 -0.02 -2.26 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.12 -3.27 5.36 30.67 0.16 -3.10 16 5 C 0.13 5.12 6.52 86.36 0.56 5.68 16 6 N -0.61 -29.69 2.99 -699.10 -2.09 -31.78 16 7 C -0.26 -14.55 9.58 84.03 0.81 -13.75 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 9 C -0.05 -2.58 4.92 84.86 0.42 -2.17 16 10 N -0.93 -55.59 11.20 21.65 0.24 -55.34 16 11 Si 0.96 45.91 29.59 68.60 2.03 47.94 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 15 C 0.17 8.12 4.87 86.36 0.42 8.55 16 16 C 0.14 4.77 2.06 45.07 0.09 4.86 16 17 H 0.06 2.58 7.58 -2.39 -0.02 2.56 16 18 N -0.68 -19.03 4.37 -445.37 -1.95 -20.98 16 19 C 0.60 18.47 7.78 86.69 0.67 19.14 16 20 O -0.54 -21.47 16.58 -3.99 -0.07 -21.53 16 21 C -0.06 -1.46 7.29 24.39 0.18 -1.28 16 22 C -0.11 -2.36 10.65 22.68 0.24 -2.12 16 23 C -0.09 -1.90 6.63 43.55 0.29 -1.61 16 24 C 0.57 10.98 3.56 71.24 0.25 11.23 16 25 F -0.16 -3.32 17.30 44.97 0.78 -2.54 16 26 F -0.16 -3.25 17.27 44.97 0.78 -2.48 16 27 F -0.15 -2.77 17.08 44.97 0.77 -2.01 16 28 N -0.30 -6.75 12.00 -48.86 -0.59 -7.34 16 29 O 0.17 3.55 11.04 65.86 0.73 4.27 16 30 H 0.06 1.07 7.36 -2.39 -0.02 1.05 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.05 2.74 6.06 -2.39 -0.01 2.72 16 40 H 0.42 8.55 8.13 -92.71 -0.75 7.80 16 41 H 0.21 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -68.07 359.55 5.70 -62.37 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.35 Total: 8.24 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 4.72 Total: 21.18 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -4.38 Total: -115.44 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.66 Total: -17.26 kcal Atomic # 9 Polarization: -9.35 SS G_CDS: 2.32 Total: -7.03 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -68.07 5.70 -62.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966887974.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.868 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds