Wall clock time and date at job start Wed Apr 1 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.44377 * 2 1 4 4 C 1.53038 * 109.46052 * 240.03691 * 2 1 3 5 5 C 1.53186 * 109.31151 * 178.61108 * 4 2 1 6 6 N 1.46924 * 108.77971 * 54.63658 * 5 4 2 7 7 C 1.36930 * 120.63674 * 126.41132 * 6 5 4 8 8 H 1.08004 * 119.99998 * 331.83705 * 7 6 5 9 9 C 1.38814 * 120.00462 * 151.83555 * 7 6 5 10 10 N 1.31621 * 119.99748 * 343.06828 * 9 7 6 11 11 Si 1.86793 * 120.00166 * 163.07132 * 9 7 6 12 12 H 1.48493 * 109.47442 * 89.99887 * 11 9 7 13 13 H 1.48504 * 109.46897 * 209.99792 * 11 9 7 14 14 H 1.48503 * 109.47481 * 329.99520 * 11 9 7 15 15 C 1.46999 * 118.74904 * 306.39279 * 6 5 4 16 16 C 1.53032 * 109.46177 * 119.96528 * 2 1 3 17 17 H 1.09007 * 109.50119 * 301.36965 * 16 2 1 18 18 N 1.46498 * 109.49907 * 61.43609 * 16 2 1 19 19 C 1.34773 * 120.00056 * 205.20816 * 18 16 2 20 20 O 1.21609 * 120.00274 * 359.72407 * 19 18 16 21 21 C 1.47419 * 120.00092 * 179.72565 * 19 18 16 22 22 N 1.36069 * 126.44932 * 0.02578 * 21 19 18 23 23 C 1.29935 * 108.47894 * 180.02562 * 22 21 19 24 24 O 1.34043 * 109.24458 * 0.02562 * 23 22 21 25 25 C 1.34260 * 108.22539 * 359.72926 * 24 23 22 26 26 C 1.50704 * 126.52674 * 180.26135 * 25 24 23 27 27 F 1.39902 * 109.47465 * 270.19696 * 26 25 24 28 28 F 1.39901 * 109.46950 * 30.19600 * 26 25 24 29 29 F 1.39892 * 109.47008 * 150.19132 * 26 25 24 30 30 H 1.08994 * 109.47115 * 300.02890 * 1 2 3 31 31 H 1.08994 * 109.47501 * 60.03645 * 1 2 3 32 32 H 1.09007 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49573 * 298.56357 * 4 2 1 34 34 H 1.09004 * 109.49905 * 58.65802 * 4 2 1 35 35 H 1.09003 * 109.58817 * 174.42166 * 5 4 2 36 36 H 1.09007 * 109.58814 * 294.70128 * 5 4 2 37 37 H 0.96996 * 120.00279 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.57977 * 293.82315 * 15 6 5 39 39 H 1.09009 * 109.62685 * 173.38170 * 15 6 5 40 40 H 0.97002 * 119.99843 * 24.93507 * 18 16 2 41 41 H 1.08003 * 125.37406 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5713 -0.6884 -1.2643 6 7 4.0680 -1.2487 -0.0001 7 6 4.9765 -2.2731 -0.0001 8 1 5.0047 -2.9700 -0.8247 9 6 5.8615 -2.4161 1.0598 10 7 6.0659 -1.4124 1.8864 11 14 6.7623 -4.0328 1.3129 12 1 8.0467 -4.0057 0.5683 13 1 7.0331 -4.2272 2.7600 14 1 5.9231 -5.1508 0.8118 15 6 3.5714 -0.6884 1.2650 16 6 2.0399 -0.7207 1.2500 17 1 1.6568 -0.2210 2.1399 18 7 1.5802 -2.1116 1.2342 19 6 1.4477 -2.7907 2.3908 20 8 1.7145 -2.2505 3.4472 21 6 0.9794 -4.1884 2.3754 22 7 0.6466 -4.9174 1.2757 23 6 0.2813 -6.1028 1.6625 24 8 0.3640 -6.1767 2.9983 25 6 0.8028 -4.9940 3.4579 26 6 1.0496 -4.6272 4.8987 27 9 -0.1208 -4.0969 5.4520 28 9 1.4269 -5.7696 5.6127 29 9 2.0718 -3.6747 4.9688 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5132 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7555 -1.2383 34 1 1.6572 -0.2206 -2.1399 35 1 3.9417 -1.2843 -2.0985 36 1 3.9142 0.3409 -1.3700 37 1 6.6845 -1.5120 2.6268 38 1 3.9142 0.3411 1.3681 39 1 3.9414 -1.2842 2.0995 40 1 1.3675 -2.5425 0.3916 41 1 -0.0385 -6.9023 1.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967029765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:44 Heat of formation + Delta-G solvation = -127.976247 kcal Electronic energy + Delta-G solvation = -32971.117563 eV Core-core repulsion = 28053.198387 eV Total energy + Delta-G solvation = -4917.919176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.16265 -47.76002 -47.53263 -43.81441 -39.63067 -37.61801 -35.20960 -34.15436 -32.82633 -31.69414 -31.01493 -29.31304 -27.41393 -26.46493 -24.40368 -23.88689 -22.71268 -22.00024 -21.10401 -20.75133 -19.13800 -18.69390 -18.64673 -18.27625 -17.82094 -16.97608 -16.72362 -16.06610 -15.38389 -14.94274 -14.62703 -14.59158 -14.43070 -14.20087 -14.06805 -13.99353 -13.81545 -13.70960 -13.66077 -13.47343 -13.26492 -12.99166 -12.77906 -12.54401 -11.95204 -11.70579 -11.57166 -11.41501 -11.16609 -11.08877 -10.91673 -10.71198 -10.51310 -10.23279 -9.94603 -9.81867 -9.67223 -9.60594 -9.49375 -8.46436 -8.43042 -6.63384 -5.75778 -3.18244 0.50463 1.56554 1.84215 2.83113 3.23806 3.37702 3.45383 3.46736 3.50362 3.56821 3.80832 4.18191 4.26262 4.51188 4.64459 4.99027 5.14011 5.18247 5.24402 5.33843 5.42936 5.56149 5.70374 5.88060 5.92830 6.00487 6.15477 6.26972 6.34937 6.43276 6.52155 6.62955 6.75253 6.84434 6.95818 7.01341 7.32705 7.65913 7.81838 7.96398 8.47630 8.55374 9.22799 9.86882 10.42643 11.32317 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.005382 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.769557 B = 5201.375399 C = 6491.645079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.080 0.920 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.252 4.252 8 H 0.063 0.937 9 C 0.007 3.993 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.287 1.287 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.160 3.840 16 C 0.123 3.877 17 H 0.080 0.920 18 N -0.669 5.669 19 C 0.581 3.419 20 O -0.517 6.517 21 C 0.035 3.965 22 N -0.460 5.460 23 C 0.214 3.786 24 O -0.175 6.175 25 C -0.097 4.097 26 C 0.564 3.436 27 F -0.163 7.163 28 F -0.171 7.171 29 F -0.118 7.118 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.029 0.971 39 H 0.098 0.902 40 H 0.405 0.595 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.303 -6.138 -0.454 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.170 4.170 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.382 4.382 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.214 1.214 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.033 3.967 16 C 0.018 3.982 17 H 0.098 0.902 18 N -0.319 5.319 19 C 0.363 3.637 20 O -0.394 6.394 21 C -0.087 4.087 22 N -0.189 5.189 23 C -0.013 4.013 24 O -0.061 6.061 25 C -0.154 4.154 26 C 0.509 3.491 27 F -0.144 7.144 28 F -0.153 7.153 29 F -0.098 7.098 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.241 0.759 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -14.943 -5.511 -0.149 15.928 hybrid contribution 0.429 -1.529 0.408 1.640 sum -14.514 -7.040 0.259 16.133 Atomic orbital electron populations 1.21861 0.95943 1.01427 1.01041 1.21314 0.94650 0.99931 0.95352 0.90174 1.22094 0.99255 0.99547 0.96065 1.20929 0.90661 0.96539 0.90253 1.43979 1.48222 1.39602 0.99125 1.19047 1.09639 1.02945 1.06541 0.91963 1.24995 0.97191 0.97109 0.99914 1.69982 1.37197 1.28874 1.17981 0.86433 0.79754 0.84135 0.77280 1.21353 1.21472 1.20737 1.21228 0.86303 0.98021 0.91110 1.21955 0.99305 0.79607 0.97357 0.90168 1.45632 1.64314 1.14006 1.07901 1.16626 0.79073 0.82560 0.85414 1.90922 1.50590 1.67722 1.30126 1.22099 1.01582 0.97584 0.87461 1.70972 1.15078 1.03623 1.29190 1.28464 0.96993 0.97326 0.78549 1.84344 1.63866 1.32615 1.25286 1.23141 1.10006 0.86503 0.95734 1.16488 0.75950 0.75616 0.81079 1.93258 1.48375 1.86633 1.86182 1.93242 1.91410 1.50667 1.79954 1.93508 1.57910 1.62648 1.95752 0.93047 0.93040 0.93041 0.92589 0.92684 0.92810 0.96385 0.93569 0.95328 0.88408 0.75854 0.71715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.05 37.16 0.34 -1.52 16 2 C -0.09 -1.44 2.48 -90.58 -0.22 -1.66 16 3 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 4 C -0.13 -2.05 5.20 -26.62 -0.14 -2.18 16 5 C 0.14 2.81 6.52 -3.71 -0.02 2.79 16 6 N -0.59 -14.09 2.91 -172.26 -0.50 -14.59 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.67 7.89 -52.48 -0.41 1.25 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -26.40 11.19 55.49 0.62 -25.77 16 11 Si 0.89 22.29 29.59 -169.99 -5.03 17.26 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.16 3.78 4.91 -3.67 -0.02 3.76 16 16 C 0.12 2.31 2.24 -67.82 -0.15 2.16 16 17 H 0.08 1.52 7.57 -51.92 -0.39 1.13 16 18 N -0.67 -12.24 4.25 -54.77 -0.23 -12.47 16 19 C 0.58 11.27 7.73 -12.52 -0.10 11.17 16 20 O -0.52 -11.23 12.81 5.27 0.07 -11.16 16 21 C 0.04 0.60 6.96 -83.02 -0.58 0.02 16 22 N -0.46 -6.46 11.06 -11.48 -0.13 -6.59 16 23 C 0.21 2.10 13.19 51.96 0.69 2.79 16 24 O -0.18 -2.13 10.72 6.52 0.07 -2.06 16 25 C -0.10 -1.48 6.75 -35.08 -0.24 -1.72 16 26 C 0.56 8.86 3.34 36.01 0.12 8.98 16 27 F -0.16 -2.42 17.30 2.25 0.04 -2.38 16 28 F -0.17 -2.49 17.30 2.25 0.04 -2.45 16 29 F -0.12 -2.22 13.49 2.25 0.03 -2.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 33 H 0.06 0.89 6.40 -51.93 -0.33 0.56 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 2.73 6.06 -51.92 -0.31 2.41 16 40 H 0.40 7.00 6.37 -40.82 -0.26 6.74 16 41 H 0.27 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -32.41 349.79 -4.92 -37.33 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.61 Total: 2.08 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -0.56 Total: 17.73 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.24 Total: -59.42 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.14 Total: -13.22 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.11 Total: -7.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.41 -4.92 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967029765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.651 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds