Wall clock time and date at job start Wed Apr 1 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.44377 * 2 1 4 4 C 1.53038 * 109.46052 * 240.03691 * 2 1 3 5 5 C 1.53186 * 109.31151 * 178.61108 * 4 2 1 6 6 N 1.46924 * 108.77971 * 54.63658 * 5 4 2 7 7 C 1.36930 * 120.63674 * 126.41132 * 6 5 4 8 8 H 1.08004 * 119.99998 * 331.83705 * 7 6 5 9 9 C 1.38814 * 120.00462 * 151.83555 * 7 6 5 10 10 N 1.31621 * 119.99748 * 343.06828 * 9 7 6 11 11 Si 1.86793 * 120.00166 * 163.07132 * 9 7 6 12 12 H 1.48493 * 109.47442 * 89.99887 * 11 9 7 13 13 H 1.48504 * 109.46897 * 209.99792 * 11 9 7 14 14 H 1.48503 * 109.47481 * 329.99520 * 11 9 7 15 15 C 1.46999 * 118.74904 * 306.39279 * 6 5 4 16 16 C 1.53032 * 109.46177 * 119.96528 * 2 1 3 17 17 H 1.09007 * 109.50119 * 301.36965 * 16 2 1 18 18 N 1.46498 * 109.49907 * 61.43609 * 16 2 1 19 19 C 1.34773 * 120.00056 * 205.20816 * 18 16 2 20 20 O 1.21609 * 120.00274 * 359.72407 * 19 18 16 21 21 C 1.47419 * 120.00092 * 179.72565 * 19 18 16 22 22 N 1.36069 * 126.44932 * 0.02578 * 21 19 18 23 23 C 1.29935 * 108.47894 * 180.02562 * 22 21 19 24 24 O 1.34043 * 109.24458 * 0.02562 * 23 22 21 25 25 C 1.34260 * 108.22539 * 359.72926 * 24 23 22 26 26 C 1.50704 * 126.52674 * 180.26135 * 25 24 23 27 27 F 1.39902 * 109.47465 * 270.19696 * 26 25 24 28 28 F 1.39901 * 109.46950 * 30.19600 * 26 25 24 29 29 F 1.39892 * 109.47008 * 150.19132 * 26 25 24 30 30 H 1.08994 * 109.47115 * 300.02890 * 1 2 3 31 31 H 1.08994 * 109.47501 * 60.03645 * 1 2 3 32 32 H 1.09007 * 109.46809 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.49573 * 298.56357 * 4 2 1 34 34 H 1.09004 * 109.49905 * 58.65802 * 4 2 1 35 35 H 1.09003 * 109.58817 * 174.42166 * 5 4 2 36 36 H 1.09007 * 109.58814 * 294.70128 * 5 4 2 37 37 H 0.96996 * 120.00279 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.57977 * 293.82315 * 15 6 5 39 39 H 1.09009 * 109.62685 * 173.38170 * 15 6 5 40 40 H 0.97002 * 119.99843 * 24.93507 * 18 16 2 41 41 H 1.08003 * 125.37406 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5713 -0.6884 -1.2643 6 7 4.0680 -1.2487 -0.0001 7 6 4.9765 -2.2731 -0.0001 8 1 5.0047 -2.9700 -0.8247 9 6 5.8615 -2.4161 1.0598 10 7 6.0659 -1.4124 1.8864 11 14 6.7623 -4.0328 1.3129 12 1 8.0467 -4.0057 0.5683 13 1 7.0331 -4.2272 2.7600 14 1 5.9231 -5.1508 0.8118 15 6 3.5714 -0.6884 1.2650 16 6 2.0399 -0.7207 1.2500 17 1 1.6568 -0.2210 2.1399 18 7 1.5802 -2.1116 1.2342 19 6 1.4477 -2.7907 2.3908 20 8 1.7145 -2.2505 3.4472 21 6 0.9794 -4.1884 2.3754 22 7 0.6466 -4.9174 1.2757 23 6 0.2813 -6.1028 1.6625 24 8 0.3640 -6.1767 2.9983 25 6 0.8028 -4.9940 3.4579 26 6 1.0496 -4.6272 4.8987 27 9 -0.1208 -4.0969 5.4520 28 9 1.4269 -5.7696 5.6127 29 9 2.0718 -3.6747 4.9688 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5132 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7555 -1.2383 34 1 1.6572 -0.2206 -2.1399 35 1 3.9417 -1.2843 -2.0985 36 1 3.9142 0.3409 -1.3700 37 1 6.6845 -1.5120 2.6268 38 1 3.9142 0.3411 1.3681 39 1 3.9414 -1.2842 2.0995 40 1 1.3675 -2.5425 0.3916 41 1 -0.0385 -6.9023 1.0106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967029765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:43 Heat of formation + Delta-G solvation = -151.896988 kcal Electronic energy + Delta-G solvation = -32972.154844 eV Core-core repulsion = 28053.198387 eV Total energy + Delta-G solvation = -4918.956457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.40874 -48.95850 -48.85689 -44.83771 -41.13317 -39.15645 -36.29804 -35.93671 -34.34398 -32.86246 -32.78930 -30.91898 -28.97509 -27.72964 -25.97044 -25.28305 -23.97332 -23.34695 -22.74776 -22.01473 -20.43647 -20.18246 -19.88656 -19.53541 -19.04733 -18.61028 -18.01991 -17.16101 -16.97181 -16.65753 -16.03947 -15.86590 -15.79503 -15.64640 -15.47783 -15.33426 -15.26541 -15.03669 -15.00176 -14.81934 -14.74515 -14.61508 -14.13859 -13.92567 -13.56276 -13.15355 -13.01671 -12.78905 -12.72438 -12.60193 -12.48129 -12.26921 -12.21084 -11.96462 -11.56279 -11.39700 -11.18025 -11.07207 -10.79134 -10.54434 -10.02486 -8.63463 -7.86674 -5.30527 -0.64662 0.46807 0.85387 1.37126 1.40154 1.47238 1.67643 1.89742 2.11823 2.44760 2.47103 2.82260 2.98193 3.02916 3.28941 3.41917 3.68786 3.81884 3.89914 3.99702 4.12395 4.13295 4.51414 4.67558 4.71287 4.78012 4.86447 4.90533 4.96399 5.08662 5.17781 5.24043 5.26583 5.46395 5.50804 5.58383 5.65869 5.71191 5.99342 6.39331 6.50402 7.09942 7.14660 7.88093 8.38681 9.18163 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009772 B = 0.005382 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.769557 B = 5201.375399 C = 6491.645079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.600 5.600 7 C -0.247 4.247 8 H 0.067 0.933 9 C -0.049 4.049 10 N -0.930 5.930 11 Si 0.948 3.052 12 H -0.280 1.280 13 H -0.302 1.302 14 H -0.271 1.271 15 C 0.170 3.830 16 C 0.133 3.867 17 H 0.073 0.927 18 N -0.662 5.662 19 C 0.571 3.429 20 O -0.551 6.551 21 C 0.016 3.984 22 N -0.489 5.489 23 C 0.253 3.747 24 O -0.168 6.168 25 C -0.103 4.103 26 C 0.564 3.436 27 F -0.160 7.160 28 F -0.165 7.165 29 F -0.142 7.142 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.245 0.755 38 H 0.004 0.996 39 H 0.050 0.950 40 H 0.411 0.589 41 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.759 -7.940 -2.837 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.084 0.916 9 C -0.245 4.245 10 N -0.577 5.577 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.229 1.229 14 H -0.196 1.196 15 C 0.043 3.957 16 C 0.028 3.972 17 H 0.091 0.909 18 N -0.312 5.312 19 C 0.355 3.645 20 O -0.429 6.429 21 C -0.106 4.106 22 N -0.217 5.217 23 C 0.027 3.973 24 O -0.054 6.054 25 C -0.162 4.162 26 C 0.508 3.492 27 F -0.141 7.141 28 F -0.146 7.146 29 F -0.123 7.123 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.068 0.932 40 H 0.249 0.751 41 H 0.346 0.654 Dipole moment (debyes) X Y Z Total from point charges -17.430 -7.317 -2.597 19.081 hybrid contribution 1.160 -1.018 1.084 1.886 sum -16.270 -8.335 -1.514 18.343 Atomic orbital electron populations 1.21765 0.93089 1.01936 1.02469 1.21287 0.96856 0.99326 0.93127 0.89911 1.21963 0.95697 1.00270 0.97621 1.21143 0.93602 0.96022 0.88118 1.44173 1.48031 1.39457 1.00677 1.19360 1.09012 1.03412 1.05972 0.91567 1.25666 0.98784 0.99629 1.00415 1.70148 1.38349 1.30602 1.18567 0.85562 0.79115 0.81358 0.76276 1.20613 1.22876 1.19617 1.20903 0.89662 0.95412 0.89678 1.21677 0.95640 0.80631 0.99300 0.90908 1.45541 1.63885 1.13703 1.08048 1.17092 0.78508 0.83810 0.85085 1.90899 1.51891 1.68930 1.31221 1.21736 1.03002 0.96705 0.89113 1.70954 1.17170 1.05149 1.28431 1.29962 0.92565 0.97021 0.77787 1.84392 1.63575 1.30936 1.26496 1.22873 1.10772 0.87505 0.95005 1.16511 0.75489 0.75314 0.81844 1.93257 1.47941 1.86652 1.86237 1.93248 1.91369 1.50054 1.79908 1.93456 1.59112 1.63800 1.95969 0.92913 0.90367 0.92969 0.92384 0.88913 0.92592 0.96580 0.94595 0.97832 0.93203 0.75081 0.65399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.05 71.98 0.65 -2.36 16 2 C -0.09 -2.51 2.48 -10.77 -0.03 -2.54 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 4 C -0.12 -3.32 5.20 30.67 0.16 -3.16 16 5 C 0.14 5.21 6.52 86.36 0.56 5.77 16 6 N -0.60 -29.20 2.91 -698.90 -2.04 -31.23 16 7 C -0.25 -13.50 9.58 84.04 0.81 -12.69 16 8 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 9 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 10 N -0.93 -57.45 11.19 21.65 0.24 -57.21 16 11 Si 0.95 46.79 29.59 68.60 2.03 48.82 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 15 C 0.17 8.40 4.91 86.35 0.42 8.82 16 16 C 0.13 5.06 2.24 45.07 0.10 5.16 16 17 H 0.07 2.87 7.57 -2.38 -0.02 2.85 16 18 N -0.66 -24.20 4.25 -445.45 -1.89 -26.10 16 19 C 0.57 22.62 7.73 86.66 0.67 23.29 16 20 O -0.55 -25.12 12.81 -4.06 -0.05 -25.17 16 21 C 0.02 0.54 6.96 40.41 0.28 0.82 16 22 N -0.49 -12.47 11.06 -305.16 -3.37 -15.85 16 23 C 0.25 3.88 13.19 130.52 1.72 5.60 16 24 O -0.17 -3.58 10.72 0.42 0.00 -3.58 16 25 C -0.10 -3.09 6.75 25.19 0.17 -2.92 16 26 C 0.56 17.88 3.34 71.24 0.24 18.12 16 27 F -0.16 -4.76 17.30 44.97 0.78 -3.99 16 28 F -0.16 -4.73 17.30 44.97 0.78 -3.95 16 29 F -0.14 -5.65 13.49 44.97 0.61 -5.04 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.17 7.54 -2.38 -0.02 1.15 16 33 H 0.06 1.66 6.40 -2.39 -0.02 1.65 16 34 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.06 2.09 7.93 -2.39 -0.02 2.08 16 36 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.24 14.95 8.31 -92.71 -0.77 14.18 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.05 2.95 6.06 -2.38 -0.01 2.94 16 40 H 0.41 13.74 6.37 -92.71 -0.59 13.15 16 41 H 0.33 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: -1.00 -75.88 349.79 3.77 -72.11 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.51 Total: 9.71 kcal Atomic # 6 Polarization: 35.30 SS G_CDS: 6.17 Total: 41.48 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -7.06 Total: -130.39 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 9 Polarization: -15.14 SS G_CDS: 2.16 Total: -12.98 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -75.88 3.77 -72.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967029765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.787 kcal (2) G-P(sol) polarization free energy of solvation -75.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds