Wall clock time and date at job start Wed Apr 1 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.45779 * 2 1 4 4 C 1.53036 * 109.46177 * 119.96456 * 2 1 3 5 5 C 1.53194 * 109.31443 * 181.38765 * 4 2 1 6 6 N 1.46927 * 108.77021 * 305.36255 * 5 4 2 7 7 C 1.36939 * 120.62818 * 233.58583 * 6 5 4 8 8 H 1.08007 * 119.99954 * 27.68012 * 7 6 5 9 9 C 1.38812 * 120.00068 * 207.68417 * 7 6 5 10 10 N 1.31610 * 119.99975 * 17.37414 * 9 7 6 11 11 Si 1.86797 * 119.99830 * 197.38045 * 9 7 6 12 12 H 1.48504 * 109.47609 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47089 * 119.99761 * 11 9 7 14 14 H 1.48502 * 109.47069 * 239.99516 * 11 9 7 15 15 C 1.46917 * 118.74052 * 53.60915 * 6 5 4 16 16 C 1.53044 * 109.45930 * 240.03064 * 2 1 3 17 17 H 1.08998 * 109.49324 * 58.62869 * 16 2 1 18 18 N 1.46495 * 109.49580 * 298.56607 * 16 2 1 19 19 C 1.34781 * 119.99950 * 155.00007 * 18 16 2 20 20 O 1.21612 * 119.99767 * 359.97438 * 19 18 16 21 21 C 1.47418 * 119.99892 * 179.97438 * 19 18 16 22 22 N 1.36067 * 126.45296 * 359.97438 * 21 19 18 23 23 C 1.29927 * 108.47979 * 180.02562 * 22 21 19 24 24 O 1.34048 * 109.24491 * 359.97438 * 23 22 21 25 25 C 1.34260 * 108.22636 * 0.02562 * 24 23 22 26 26 C 1.50702 * 126.52292 * 180.02562 * 25 24 23 27 27 F 1.39899 * 109.47031 * 269.95349 * 26 25 24 28 28 F 1.39898 * 109.47353 * 29.95936 * 26 25 24 29 29 F 1.39901 * 109.46819 * 149.95822 * 26 25 24 30 30 H 1.08997 * 109.47180 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46931 * 299.96934 * 1 2 3 32 32 H 1.09001 * 109.47100 * 59.96993 * 1 2 3 33 33 H 1.09010 * 109.49845 * 301.33328 * 4 2 1 34 34 H 1.08996 * 109.49954 * 61.42921 * 4 2 1 35 35 H 1.08996 * 109.58567 * 65.15035 * 5 4 2 36 36 H 1.08995 * 109.58552 * 185.43168 * 5 4 2 37 37 H 0.97004 * 120.00459 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.59100 * 186.60281 * 15 6 5 39 39 H 1.09001 * 109.58986 * 66.18242 * 15 6 5 40 40 H 0.97001 * 120.00174 * 334.99763 * 18 16 2 41 41 H 1.07999 * 125.37922 * 179.72953 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9764 -2.2734 0.0000 8 1 5.0098 -2.9655 0.8285 9 6 5.8546 -2.4223 -1.0646 10 7 6.0604 -1.4206 -1.8930 11 14 6.7441 -4.0447 -1.3216 12 1 6.3425 -5.0030 -0.2606 13 1 6.3867 -4.5999 -2.6518 14 1 8.2107 -3.8208 -1.2564 15 6 3.5713 -0.6887 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6567 -0.2212 -2.1398 18 7 1.5801 -2.1117 -1.2341 19 6 1.4515 -2.7922 -2.3904 20 8 1.7167 -2.2515 -3.4469 21 6 0.9894 -4.1920 -2.3743 22 7 0.6590 -4.9217 -1.2744 23 6 0.3003 -6.1093 -1.6605 24 8 0.3851 -6.1840 -2.9962 25 6 0.8132 -4.9978 -3.4568 26 6 1.0522 -4.6286 -4.8982 27 9 2.3756 -4.9247 -5.2422 28 9 0.1832 -5.3579 -5.7167 29 9 0.8198 -3.2602 -5.0737 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6573 -0.2206 2.1399 34 1 1.6978 -1.7555 1.2384 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2822 2.0999 37 1 6.6743 -1.5245 -2.6368 38 1 3.9416 -1.2846 -2.0984 39 1 3.9143 0.3408 -1.3675 40 1 1.3683 -2.5429 -0.3914 41 1 -0.0126 -6.9110 -1.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967029768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:47 Heat of formation + Delta-G solvation = -152.050812 kcal Electronic energy + Delta-G solvation = -32975.973588 eV Core-core repulsion = 28057.010461 eV Total energy + Delta-G solvation = -4918.963127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.41322 -48.97173 -48.85316 -44.83917 -41.13718 -39.16204 -36.30013 -35.94447 -34.34751 -32.86649 -32.79234 -30.92120 -28.97867 -27.73379 -25.97732 -25.28719 -23.97787 -23.34616 -22.74964 -22.01977 -20.43962 -20.18640 -19.88555 -19.55061 -19.05118 -18.61603 -18.02259 -17.15565 -16.97751 -16.66673 -16.05561 -15.83490 -15.78050 -15.68520 -15.50915 -15.33779 -15.26967 -15.03238 -15.01725 -14.81564 -14.75017 -14.59560 -14.13778 -13.92515 -13.57740 -13.17233 -13.00479 -12.78980 -12.75810 -12.62692 -12.48847 -12.21693 -12.21202 -11.94808 -11.56314 -11.38370 -11.19884 -11.07574 -10.79448 -10.56007 -10.02565 -8.64857 -7.87247 -5.30646 -0.64922 0.46486 0.85335 1.36328 1.39726 1.47799 1.68023 1.88581 2.11794 2.44416 2.46564 2.82081 2.98310 3.01617 3.28264 3.41776 3.68427 3.81743 3.89778 3.99821 4.12393 4.13210 4.51193 4.67641 4.71368 4.78110 4.86421 4.90322 4.96438 5.08729 5.17813 5.24099 5.26547 5.46482 5.50767 5.58203 5.65642 5.70782 5.99138 6.38615 6.50129 7.09717 7.14071 7.87667 8.37806 9.17594 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.005393 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.808075 B = 5190.700887 C = 6476.137902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.600 5.600 7 C -0.244 4.244 8 H 0.068 0.932 9 C -0.050 4.050 10 N -0.930 5.930 11 Si 0.946 3.054 12 H -0.260 1.260 13 H -0.303 1.303 14 H -0.290 1.290 15 C 0.170 3.830 16 C 0.133 3.867 17 H 0.073 0.927 18 N -0.662 5.662 19 C 0.571 3.429 20 O -0.551 6.551 21 C 0.016 3.984 22 N -0.489 5.489 23 C 0.253 3.747 24 O -0.168 6.168 25 C -0.104 4.104 26 C 0.564 3.436 27 F -0.171 7.171 28 F -0.160 7.160 29 F -0.137 7.137 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.056 0.944 37 H 0.245 0.755 38 H 0.050 0.950 39 H 0.004 0.996 40 H 0.411 0.589 41 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 -7.871 2.984 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.323 5.323 7 C -0.375 4.375 8 H 0.086 0.914 9 C -0.246 4.246 10 N -0.577 5.577 11 Si 0.775 3.225 12 H -0.184 1.184 13 H -0.231 1.231 14 H -0.217 1.217 15 C 0.043 3.957 16 C 0.028 3.972 17 H 0.091 0.909 18 N -0.312 5.312 19 C 0.355 3.645 20 O -0.430 6.430 21 C -0.106 4.106 22 N -0.217 5.217 23 C 0.027 3.973 24 O -0.054 6.054 25 C -0.162 4.162 26 C 0.508 3.492 27 F -0.152 7.152 28 F -0.141 7.141 29 F -0.118 7.118 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.022 0.978 40 H 0.249 0.751 41 H 0.346 0.654 Dipole moment (debyes) X Y Z Total from point charges -17.605 -7.249 2.758 19.238 hybrid contribution 1.194 -1.030 -1.132 1.941 sum -16.411 -8.279 1.626 18.453 Atomic orbital electron populations 1.21764 0.93081 1.01945 1.02464 1.21288 0.96865 0.99321 0.93113 0.89912 1.21966 0.95686 1.00287 0.97623 1.21145 0.93614 0.96031 0.88100 1.44175 1.47998 1.39467 1.00710 1.19413 1.09132 1.03462 1.05495 0.91447 1.25648 0.98855 0.99629 1.00449 1.70154 1.38658 1.30551 1.18340 0.85509 0.78233 0.81457 0.77252 1.18419 1.23105 1.21705 1.20897 0.89707 0.95437 0.89700 1.21678 0.95598 0.80638 0.99331 0.90890 1.45541 1.63909 1.13658 1.08049 1.17094 0.78585 0.83726 0.85071 1.90900 1.51831 1.69108 1.31171 1.21737 1.02987 0.96732 0.89099 1.70950 1.17194 1.05123 1.28385 1.29967 0.92517 0.97027 0.77794 1.84393 1.63859 1.30654 1.26507 1.22870 1.10876 0.87434 0.94991 1.16512 0.74662 0.76043 0.81944 1.93274 1.36115 1.93141 1.92684 1.93250 1.69182 1.77308 1.74366 1.93423 1.94018 1.29218 1.95099 0.92953 0.90371 0.92919 0.88899 0.92360 0.96571 0.92532 0.94622 0.93203 0.97817 0.75058 0.65375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.05 71.98 0.65 -2.35 16 2 C -0.09 -2.50 2.48 -10.77 -0.03 -2.53 16 3 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.12 -3.31 5.20 30.67 0.16 -3.15 16 5 C 0.14 5.19 6.51 86.36 0.56 5.75 16 6 N -0.60 -29.15 2.91 -699.12 -2.04 -31.19 16 7 C -0.24 -13.34 9.59 84.03 0.81 -12.53 16 8 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 9 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 10 N -0.93 -57.55 11.19 21.65 0.24 -57.30 16 11 Si 0.95 46.90 29.59 68.60 2.03 48.93 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.30 -15.63 7.11 99.48 0.71 -14.93 16 14 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 15 C 0.17 8.36 4.91 86.36 0.42 8.78 16 16 C 0.13 5.06 2.24 45.07 0.10 5.16 16 17 H 0.07 2.87 7.58 -2.39 -0.02 2.86 16 18 N -0.66 -24.17 4.25 -445.44 -1.89 -26.06 16 19 C 0.57 22.66 7.73 86.66 0.67 23.33 16 20 O -0.55 -25.22 12.81 -4.07 -0.05 -25.28 16 21 C 0.02 0.54 6.96 40.41 0.28 0.82 16 22 N -0.49 -12.43 11.06 -305.16 -3.37 -15.80 16 23 C 0.25 3.87 13.19 130.52 1.72 5.59 16 24 O -0.17 -3.59 10.72 0.37 0.00 -3.59 16 25 C -0.10 -3.10 6.75 25.19 0.17 -2.93 16 26 C 0.56 18.00 3.34 71.24 0.24 18.24 16 27 F -0.17 -6.05 17.30 44.97 0.78 -5.27 16 28 F -0.16 -4.31 17.30 44.97 0.78 -3.53 16 29 F -0.14 -4.96 13.49 44.97 0.61 -4.36 16 30 H 0.05 1.17 7.54 -2.39 -0.02 1.15 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.06 1.66 6.40 -2.39 -0.02 1.65 16 35 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 2.11 7.94 -2.39 -0.02 2.09 16 37 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.05 2.95 6.04 -2.39 -0.01 2.94 16 39 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 40 H 0.41 13.70 6.37 -92.71 -0.59 13.11 16 41 H 0.33 -0.08 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -76.21 349.76 3.77 -72.44 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.51 Total: 9.33 kcal Atomic # 6 Polarization: 35.50 SS G_CDS: 6.17 Total: 41.67 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -7.06 Total: -130.35 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 9 Polarization: -15.32 SS G_CDS: 2.16 Total: -13.16 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.21 3.77 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967029768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.614 kcal (2) G-P(sol) polarization free energy of solvation -76.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds