Wall clock time and date at job start Wed Apr 1 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.44672 * 2 1 4 4 C 1.53037 * 109.46160 * 119.96483 * 2 1 3 5 5 C 1.53193 * 109.31224 * 181.38550 * 4 2 1 6 6 N 1.46917 * 108.77598 * 305.36944 * 5 4 2 7 7 C 1.36946 * 120.62947 * 233.58115 * 6 5 4 8 8 H 1.07998 * 119.99603 * 27.81179 * 7 6 5 9 9 C 1.38807 * 120.00218 * 208.08043 * 7 6 5 10 10 N 1.31626 * 119.99670 * 17.10850 * 9 7 6 11 11 Si 1.86802 * 120.00194 * 197.10745 * 9 7 6 12 12 H 1.48498 * 109.46977 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47326 * 120.00159 * 11 9 7 14 14 H 1.48498 * 109.46833 * 240.00234 * 11 9 7 15 15 C 1.46923 * 118.74242 * 53.86025 * 6 5 4 16 16 C 1.53033 * 109.46188 * 240.04056 * 2 1 3 17 17 H 1.09010 * 109.49237 * 298.56093 * 16 2 1 18 18 N 1.46497 * 109.50381 * 58.65618 * 16 2 1 19 19 C 1.34771 * 120.00604 * 205.00316 * 18 16 2 20 20 O 1.21615 * 120.00107 * 0.02562 * 19 18 16 21 21 C 1.47416 * 120.00220 * 179.97438 * 19 18 16 22 22 N 1.36064 * 126.45066 * 0.02821 * 21 19 18 23 23 C 1.29935 * 108.48279 * 179.97438 * 22 21 19 24 24 O 1.34055 * 109.23722 * 359.97438 * 23 22 21 25 25 C 1.34251 * 108.22949 * 359.77047 * 24 23 22 26 26 C 1.50698 * 126.52453 * 180.23191 * 25 24 23 27 27 F 1.39909 * 109.47285 * 270.16076 * 26 25 24 28 28 F 1.39899 * 109.47521 * 30.16136 * 26 25 24 29 29 F 1.39899 * 109.47096 * 150.16450 * 26 25 24 30 30 H 1.09001 * 109.47437 * 300.03315 * 1 2 3 31 31 H 1.09000 * 109.47730 * 60.03027 * 1 2 3 32 32 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.49601 * 61.43837 * 4 2 1 34 34 H 1.09002 * 109.49935 * 301.34129 * 4 2 1 35 35 H 1.09001 * 109.58699 * 185.57397 * 5 4 2 36 36 H 1.09001 * 109.58543 * 65.16051 * 5 4 2 37 37 H 0.97003 * 119.99669 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58831 * 65.92721 * 15 6 5 39 39 H 1.09002 * 109.59001 * 186.35120 * 15 6 5 40 40 H 0.97004 * 119.99556 * 25.00173 * 18 16 2 41 41 H 1.07994 * 125.38222 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0678 -1.2486 0.0000 7 6 4.9765 -2.2732 -0.0001 8 1 5.0085 -2.9666 0.8273 9 6 5.8602 -2.4171 -1.0608 10 7 6.0662 -1.4130 -1.8866 11 14 6.7571 -4.0357 -1.3164 12 1 6.3531 -4.9976 -0.2596 13 1 6.4081 -4.5899 -2.6491 14 1 8.2224 -3.8064 -1.2438 15 6 3.5756 -0.6846 -1.2643 16 6 2.0398 -0.7206 -1.2501 17 1 1.6978 -1.7555 -1.2383 18 7 1.5255 -0.0486 -2.4459 19 6 1.3971 -0.7320 -3.6004 20 8 1.7077 -1.9068 -3.6494 21 6 0.8790 -0.0559 -4.8035 22 7 0.4938 1.2457 -4.8967 23 6 0.0970 1.4719 -6.1131 24 8 0.2112 0.3458 -6.8315 25 6 0.7022 -0.6144 -6.0319 26 6 0.9975 -2.0403 -6.4198 27 9 -0.1394 -2.8271 -6.2055 28 9 1.3521 -2.0920 -7.7722 29 9 2.0540 -2.5260 -5.6419 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5133 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7557 1.2383 34 1 1.6572 -0.2207 2.1398 35 1 3.9417 -1.2844 2.0984 36 1 3.9142 0.3410 1.3674 37 1 6.6835 -1.5137 -2.6281 38 1 3.9188 0.3451 -1.3632 39 1 3.9487 -1.2780 -2.0990 40 1 1.2774 0.8884 -2.4068 41 1 -0.2666 2.4177 -6.4866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967029771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:53 Heat of formation + Delta-G solvation = -129.625216 kcal Electronic energy + Delta-G solvation = -32283.585004 eV Core-core repulsion = 27365.594324 eV Total energy + Delta-G solvation = -4917.990681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.23310 -47.82889 -47.60713 -43.96419 -39.61825 -37.65021 -35.36100 -34.38649 -33.12786 -31.82413 -30.96536 -29.07316 -27.42707 -26.53962 -24.47438 -23.96127 -22.87574 -21.92998 -21.04044 -20.41990 -19.66043 -18.96287 -18.74612 -18.33675 -17.74003 -17.11216 -16.80177 -16.17569 -15.71451 -14.94574 -14.72853 -14.63649 -14.47179 -14.24702 -14.15527 -14.05244 -13.76984 -13.73454 -13.64868 -13.51032 -13.35352 -13.03802 -12.80739 -12.41816 -12.00914 -11.84398 -11.66036 -11.58010 -11.33675 -10.88988 -10.70120 -10.67637 -10.44019 -10.15208 -10.06683 -9.91492 -9.80815 -9.67282 -9.50113 -8.60045 -8.41790 -6.64988 -5.74246 -3.17507 0.36303 1.44053 1.67690 2.73558 3.08373 3.29963 3.44217 3.46344 3.52696 3.53847 3.67095 4.08198 4.16765 4.46044 4.56982 4.82849 5.00280 5.16314 5.26011 5.40083 5.49381 5.56593 5.60895 5.90720 6.01179 6.02833 6.10776 6.23793 6.36723 6.45927 6.49730 6.70616 6.73451 6.80698 6.89299 6.97436 7.27383 7.72092 7.76637 7.86246 8.37903 8.49528 9.24132 9.88103 10.42661 11.33691 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010534 B = 0.004403 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.329145 B = 6357.757515 C = 8123.006362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.291 1.291 15 C 0.166 3.834 16 C 0.122 3.878 17 H 0.087 0.913 18 N -0.690 5.690 19 C 0.579 3.421 20 O -0.502 6.502 21 C 0.030 3.970 22 N -0.464 5.464 23 C 0.216 3.784 24 O -0.174 6.174 25 C -0.091 4.091 26 C 0.563 3.437 27 F -0.162 7.162 28 F -0.171 7.171 29 F -0.117 7.117 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.019 0.981 39 H 0.097 0.903 40 H 0.402 0.598 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.568 7.606 -7.895 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.039 3.961 16 C 0.017 3.983 17 H 0.105 0.895 18 N -0.340 5.340 19 C 0.361 3.639 20 O -0.376 6.376 21 C -0.093 4.093 22 N -0.193 5.193 23 C -0.012 4.012 24 O -0.059 6.059 25 C -0.148 4.148 26 C 0.507 3.493 27 F -0.143 7.143 28 F -0.152 7.152 29 F -0.098 7.098 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.115 0.885 40 H 0.236 0.764 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -15.181 7.131 -7.567 18.401 hybrid contribution 0.285 -0.567 -0.978 1.166 sum -14.897 6.564 -8.545 18.385 Atomic orbital electron populations 1.21860 0.95948 1.01589 1.00849 1.21303 0.94631 0.99767 0.95392 0.91348 1.22071 0.98946 1.00065 0.95365 1.20972 0.90815 0.96499 0.90191 1.43974 1.48184 1.39725 0.99124 1.19189 1.09528 1.03180 1.06646 0.91500 1.25033 0.97099 0.97381 0.99701 1.70023 1.37326 1.28950 1.17962 0.86252 0.78918 0.83743 0.78038 1.20180 1.21359 1.21791 1.21200 0.86082 0.97585 0.91207 1.22255 0.98629 0.96469 0.80938 0.89517 1.45853 1.63987 1.14458 1.09727 1.16688 0.79315 0.86189 0.81715 1.90994 1.48873 1.14490 1.83231 1.22108 1.01929 0.90311 0.94948 1.70954 1.14884 1.13684 1.19734 1.28473 0.97023 0.90487 0.85190 1.84361 1.62362 1.18740 1.40483 1.23193 1.08633 0.91705 0.91274 1.16508 0.76222 0.81550 0.74971 1.93271 1.50988 1.75540 1.94514 1.93246 1.92011 1.96684 1.33248 1.93523 1.55301 1.87641 1.73297 0.93035 0.93193 0.92902 0.92029 0.92528 0.92552 0.96394 0.93700 0.96315 0.88531 0.76366 0.71643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.02 37.16 0.34 -1.56 16 2 C -0.09 -1.46 2.27 -90.59 -0.21 -1.66 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.12 -2.07 5.36 -26.61 -0.14 -2.22 16 5 C 0.14 2.90 6.51 -3.72 -0.02 2.87 16 6 N -0.59 -14.78 2.99 -172.06 -0.51 -15.30 16 7 C -0.26 -7.15 9.58 -15.06 -0.14 -7.30 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 C 0.01 0.20 4.92 -17.43 -0.09 0.11 16 10 N -0.90 -26.80 11.18 55.49 0.62 -26.18 16 11 Si 0.90 22.58 29.59 -169.99 -5.03 17.55 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 15 C 0.17 4.02 4.91 -3.49 -0.02 4.01 16 16 C 0.12 2.34 2.08 -67.59 -0.14 2.20 16 17 H 0.09 1.88 7.58 -51.92 -0.39 1.48 16 18 N -0.69 -11.61 4.36 -54.55 -0.24 -11.85 16 19 C 0.58 10.47 7.73 -12.53 -0.10 10.38 16 20 O -0.50 -10.81 12.82 5.26 0.07 -10.74 16 21 C 0.03 0.44 6.96 -83.02 -0.58 -0.14 16 22 N -0.46 -5.45 11.06 -11.48 -0.13 -5.58 16 23 C 0.22 1.68 13.19 51.96 0.69 2.37 16 24 O -0.17 -1.82 10.72 6.52 0.07 -1.75 16 25 C -0.09 -1.25 6.75 -35.08 -0.24 -1.49 16 26 C 0.56 8.31 3.34 36.00 0.12 8.43 16 27 F -0.16 -2.33 17.30 2.25 0.04 -2.29 16 28 F -0.17 -2.30 17.30 2.25 0.04 -2.26 16 29 F -0.12 -2.13 13.49 2.25 0.03 -2.10 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 2.75 6.04 -51.93 -0.31 2.44 16 40 H 0.40 5.78 8.04 -40.82 -0.33 5.45 16 41 H 0.27 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -33.49 352.94 -5.01 -38.51 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.76 Total: 0.65 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: -0.53 Total: 16.02 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.26 Total: -58.90 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.14 Total: -12.49 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.11 Total: -6.66 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.49 -5.01 -38.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967029771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.118 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds