Wall clock time and date at job start Wed Apr 1 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08998 * 109.49916 * 61.43571 * 16 2 1 18 18 N 1.46501 * 109.52616 * 301.35004 * 16 2 1 19 19 C 1.34773 * 120.00306 * 155.15113 * 18 16 2 20 20 O 1.21614 * 119.99621 * 359.97438 * 19 18 16 21 21 C 1.47414 * 120.00188 * 180.02562 * 19 18 16 22 22 N 1.36071 * 126.44701 * 0.02562 * 21 19 18 23 23 C 1.29940 * 108.47566 * 180.02562 * 22 21 19 24 24 O 1.34049 * 109.24396 * 0.02562 * 23 22 21 25 25 C 1.34261 * 108.22711 * 359.73504 * 24 23 22 26 26 C 1.50694 * 126.52480 * 180.26665 * 25 24 23 27 27 F 1.39906 * 109.47237 * 270.17999 * 26 25 24 28 28 F 1.39901 * 109.47333 * 30.18371 * 26 25 24 29 29 F 1.39904 * 109.47303 * 150.18634 * 26 25 24 30 30 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 31 31 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 32 32 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 34 34 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 35 35 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 36 36 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 39 39 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 40 40 H 0.97002 * 119.99415 * 335.14819 * 18 16 2 41 41 H 1.08004 * 125.37458 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6978 -1.7558 1.2381 18 7 1.5256 -0.0497 2.4464 19 6 1.4003 -0.7331 3.6012 20 8 1.7136 -1.9071 3.6500 21 6 0.8823 -0.0578 4.8049 22 7 0.4933 1.2428 4.8978 23 6 0.0980 1.4684 6.1149 24 8 0.2169 0.3433 6.8338 25 6 0.6991 -0.6189 6.0311 26 6 0.9859 -2.0475 6.4157 27 9 2.3038 -2.1516 6.8735 28 9 0.1071 -2.4428 7.4299 29 9 0.8131 -2.8743 5.3004 30 1 -0.3633 0.5142 0.8898 31 1 -0.3633 0.5134 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6592 -0.2217 -2.1447 34 1 1.6979 -1.7560 -1.2421 35 1 3.9143 0.3410 -1.3673 36 1 3.9437 -1.2829 -2.0987 37 1 6.6846 -1.5126 2.6264 38 1 3.9417 -1.2849 2.0983 39 1 3.9143 0.3407 1.3673 40 1 1.2754 0.8867 2.4073 41 1 -0.2678 2.4135 6.4884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967029774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:56 Heat of formation + Delta-G solvation = -155.115041 kcal Electronic energy + Delta-G solvation = -32276.467194 eV Core-core repulsion = 27357.371192 eV Total energy + Delta-G solvation = -4919.096002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.41337 -48.96718 -48.86529 -44.86360 -41.09681 -39.21239 -36.35368 -36.10350 -34.70077 -32.87322 -32.80486 -30.70779 -29.03096 -27.73594 -25.99863 -25.39083 -24.02848 -23.20634 -22.63714 -21.77157 -21.14258 -20.16733 -19.88832 -19.54212 -18.93818 -18.73169 -18.02998 -17.34889 -17.07429 -16.73362 -16.07438 -15.82215 -15.78261 -15.64797 -15.41645 -15.36395 -15.26440 -15.23082 -15.02368 -14.91728 -14.79075 -14.48485 -14.10888 -13.94953 -13.54370 -13.29682 -13.06541 -12.79113 -12.71204 -12.58882 -12.36351 -12.25240 -12.19770 -11.92039 -11.64934 -11.59533 -11.22504 -11.15868 -10.81809 -10.55332 -10.17009 -8.69773 -7.90102 -5.35850 -0.68210 0.44535 0.82118 1.40340 1.46694 1.50851 1.66148 1.82255 1.98526 2.44099 2.48384 2.77160 2.97428 2.98660 3.26077 3.36001 3.71810 3.78428 3.85906 3.99415 4.10977 4.15192 4.46440 4.55532 4.65775 4.73354 4.85014 4.92144 4.97988 5.11461 5.17582 5.18048 5.25045 5.36344 5.44425 5.52510 5.61262 5.74703 5.95237 6.34053 6.43339 7.01263 7.12163 7.84036 8.33426 9.14742 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010538 B = 0.004399 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.502945 B = 6364.217484 C = 8125.019799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.079 0.921 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.265 4.265 8 H 0.069 0.931 9 C -0.048 4.048 10 N -0.930 5.930 11 Si 0.959 3.041 12 H -0.266 1.266 13 H -0.295 1.295 14 H -0.285 1.285 15 C 0.179 3.821 16 C 0.139 3.861 17 H 0.058 0.942 18 N -0.680 5.680 19 C 0.572 3.428 20 O -0.545 6.545 21 C 0.016 3.984 22 N -0.487 5.487 23 C 0.257 3.743 24 O -0.166 6.166 25 C -0.097 4.097 26 C 0.562 3.438 27 F -0.169 7.169 28 F -0.161 7.161 29 F -0.140 7.140 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.045 0.955 39 H -0.001 1.001 40 H 0.416 0.584 41 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 9.652 7.682 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.331 5.331 7 C -0.395 4.395 8 H 0.087 0.913 9 C -0.244 4.244 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.191 1.191 13 H -0.221 1.221 14 H -0.211 1.211 15 C 0.052 3.948 16 C 0.033 3.967 17 H 0.077 0.923 18 N -0.330 5.330 19 C 0.356 3.644 20 O -0.423 6.423 21 C -0.106 4.106 22 N -0.215 5.215 23 C 0.031 3.969 24 O -0.053 6.053 25 C -0.156 4.156 26 C 0.506 3.494 27 F -0.150 7.150 28 F -0.142 7.142 29 F -0.121 7.121 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.017 0.983 40 H 0.253 0.747 41 H 0.348 0.652 Dipole moment (debyes) X Y Z Total from point charges -17.776 9.230 7.324 21.326 hybrid contribution 1.021 -1.124 1.073 1.860 sum -16.755 8.106 8.397 20.419 Atomic orbital electron populations 1.21767 0.92961 1.01749 1.02749 1.21327 0.96955 0.99398 0.92727 0.90277 1.22024 0.95622 1.00333 0.97394 1.21188 0.93622 0.96204 0.87951 1.44209 1.48117 1.39862 1.00949 1.19461 1.09426 1.03895 1.06704 0.91327 1.25770 0.98556 1.00146 0.99898 1.70159 1.38213 1.30770 1.18453 0.85457 0.78111 0.80320 0.77359 1.19133 1.22130 1.21114 1.20778 0.89452 0.95089 0.89523 1.21674 0.95079 0.96172 0.83775 0.92343 1.45658 1.63404 1.15048 1.08909 1.17171 0.78661 0.85790 0.82740 1.90971 1.50508 1.16444 1.84341 1.21594 1.03157 0.91880 0.93940 1.70954 1.16698 1.11869 1.22006 1.30004 0.92607 0.90882 0.83416 1.84413 1.62331 1.18724 1.39809 1.22812 1.09700 0.91667 0.91374 1.16567 0.74843 0.82698 0.75265 1.93276 1.36481 1.96338 1.88902 1.93254 1.68583 1.91907 1.60431 1.93433 1.94913 1.72410 1.51373 0.92258 0.90166 0.93639 0.88339 0.92919 0.96067 0.92513 0.94429 0.93660 0.98298 0.74651 0.65229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.02 71.98 0.65 -2.44 16 2 C -0.08 -2.54 2.27 -10.66 -0.02 -2.57 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.11 -3.56 5.39 30.78 0.17 -3.40 16 5 C 0.14 5.48 6.50 86.36 0.56 6.04 16 6 N -0.61 -31.54 2.99 -699.07 -2.09 -33.63 16 7 C -0.26 -15.26 9.58 84.03 0.81 -14.46 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 9 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 10 N -0.93 -58.34 11.20 21.65 0.24 -58.10 16 11 Si 0.96 48.09 29.59 68.60 2.03 50.12 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 14 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 15 C 0.18 9.07 4.88 86.37 0.42 9.49 16 16 C 0.14 5.46 2.06 45.07 0.09 5.55 16 17 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 18 N -0.68 -23.15 4.37 -445.43 -1.95 -25.09 16 19 C 0.57 21.43 7.73 86.66 0.67 22.10 16 20 O -0.55 -25.03 12.81 -4.07 -0.05 -25.08 16 21 C 0.02 0.47 6.96 40.41 0.28 0.75 16 22 N -0.49 -10.21 11.06 -305.14 -3.37 -13.58 16 23 C 0.26 2.90 13.19 130.52 1.72 4.62 16 24 O -0.17 -3.01 10.72 0.35 0.00 -3.01 16 25 C -0.10 -2.62 6.75 25.18 0.17 -2.45 16 26 C 0.56 16.95 3.34 71.23 0.24 17.19 16 27 F -0.17 -5.56 17.30 44.97 0.78 -4.78 16 28 F -0.16 -4.12 17.30 44.97 0.78 -3.34 16 29 F -0.14 -5.07 13.49 44.97 0.61 -4.46 16 30 H 0.06 1.26 7.36 -2.39 -0.02 1.24 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 37 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.04 2.75 6.06 -2.39 -0.01 2.74 16 39 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.42 11.60 8.03 -92.71 -0.74 10.86 16 41 H 0.33 -1.40 8.06 -2.91 -0.02 -1.42 16 Total: -1.00 -79.94 352.96 3.50 -76.45 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 0.35 Total: 6.51 kcal Atomic # 6 Polarization: 31.83 SS G_CDS: 6.17 Total: 38.00 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -7.17 Total: -130.40 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 9 Polarization: -14.76 SS G_CDS: 2.16 Total: -12.59 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -79.94 3.50 -76.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967029774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.669 kcal (2) G-P(sol) polarization free energy of solvation -79.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds