Wall clock time and date at job start Wed Apr 1 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.44835 * 2 1 4 4 C 1.53042 * 109.45847 * 119.96470 * 2 1 3 5 5 C 1.53195 * 109.30838 * 181.38438 * 4 2 1 6 6 N 1.46926 * 108.77673 * 305.36259 * 5 4 2 7 7 C 1.36930 * 120.63319 * 233.63080 * 6 5 4 8 8 H 1.07996 * 120.00264 * 152.61053 * 7 6 5 9 9 C 1.38813 * 119.99967 * 332.61064 * 7 6 5 10 10 N 1.31619 * 119.99973 * 159.36834 * 9 7 6 11 11 Si 1.86796 * 119.99998 * 339.36840 * 9 7 6 12 12 H 1.48506 * 109.47276 * 92.93188 * 11 9 7 13 13 H 1.48503 * 109.47290 * 212.92983 * 11 9 7 14 14 H 1.48494 * 109.47373 * 332.93029 * 11 9 7 15 15 C 1.46930 * 118.73549 * 53.61469 * 6 5 4 16 16 C 1.53039 * 109.45677 * 240.03430 * 2 1 3 17 17 H 1.08999 * 109.52402 * 298.58000 * 16 2 1 18 18 N 1.46494 * 109.50157 * 58.66417 * 16 2 1 19 19 C 1.34773 * 120.00323 * 204.83811 * 18 16 2 20 20 O 1.21612 * 119.99886 * 359.97438 * 19 18 16 21 21 C 1.47418 * 120.00535 * 179.97438 * 19 18 16 22 22 C 1.36095 * 126.45140 * 179.97438 * 21 19 18 23 23 O 1.34256 * 106.94797 * 180.21995 * 22 21 19 24 24 C 1.34052 * 108.22609 * 359.61366 * 23 22 21 25 25 C 1.50703 * 125.37786 * 180.17391 * 24 23 22 26 26 F 1.39896 * 109.47512 * 270.25928 * 25 24 23 27 27 F 1.39902 * 109.46931 * 30.25887 * 25 24 23 28 28 F 1.39903 * 109.47240 * 150.25735 * 25 24 23 29 29 N 1.29933 * 109.24732 * 0.39748 * 24 23 22 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46663 * 299.96884 * 1 2 3 32 32 H 1.08995 * 109.46884 * 59.96223 * 1 2 3 33 33 H 1.08999 * 109.49850 * 61.43651 * 4 2 1 34 34 H 1.08995 * 109.52550 * 301.34872 * 4 2 1 35 35 H 1.09001 * 109.58433 * 185.57970 * 5 4 2 36 36 H 1.09003 * 109.58910 * 65.15483 * 5 4 2 37 37 H 0.97005 * 119.99797 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58263 * 186.60405 * 15 6 5 39 39 H 1.08996 * 109.70758 * 66.24693 * 15 6 5 40 40 H 0.97003 * 119.99781 * 24.83214 * 18 16 2 41 41 H 1.07989 * 126.52459 * 359.96042 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9757 -2.2740 0.0000 8 1 5.0118 -2.9634 -0.8305 9 6 5.8498 -2.4270 1.0674 10 7 6.4261 -3.5902 1.2846 11 14 6.2082 -0.9820 2.1957 12 1 5.2794 -1.0160 3.3539 13 1 7.6088 -1.0689 2.6817 14 1 6.0214 0.2876 1.4485 15 6 3.5714 -0.6886 -1.2643 16 6 2.0398 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5256 -0.0487 -2.4459 19 6 1.4002 -0.7314 -3.6012 20 8 1.7143 -1.9052 -3.6511 21 6 0.8821 -0.0553 -4.8045 22 6 0.7029 -0.6146 -6.0322 23 8 0.2199 0.3479 -6.8339 24 6 0.0967 1.4714 -6.1131 25 6 -0.4152 2.7899 -6.6331 26 9 0.6544 3.5424 -7.1299 27 9 -1.3393 2.5599 -7.6580 28 9 -1.0362 3.4916 -5.5942 29 7 0.4928 1.2453 -4.8965 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5134 0.8903 32 1 -0.3633 0.5144 -0.8896 33 1 1.6979 -1.7556 1.2384 34 1 1.6573 -0.2212 2.1401 35 1 3.9418 -1.2845 2.0984 36 1 3.9144 0.3410 1.3673 37 1 7.0372 -3.6970 2.0303 38 1 3.9417 -1.2846 -2.0984 39 1 3.9143 0.3406 -1.3700 40 1 1.2753 0.8876 -2.4062 41 1 0.9136 -1.6367 -6.3098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967257914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:09 Heat of formation + Delta-G solvation = -129.451955 kcal Electronic energy + Delta-G solvation = -30889.125910 eV Core-core repulsion = 25971.142743 eV Total energy + Delta-G solvation = -4917.983167 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -50.89751 -48.42453 -48.39164 -44.23253 -39.92550 -37.98214 -35.69053 -34.73278 -33.15864 -31.98785 -31.42807 -29.51232 -27.73088 -27.34736 -25.04183 -23.79641 -22.92123 -22.42367 -21.32875 -20.85996 -19.97467 -19.37406 -19.23404 -19.00019 -17.78470 -17.39227 -16.89025 -16.81848 -15.90907 -15.22393 -15.19045 -15.16711 -15.00859 -14.77622 -14.56775 -14.49843 -14.48968 -14.11246 -13.99656 -13.78980 -13.54510 -13.45210 -13.26281 -12.68024 -12.23100 -12.17493 -12.10325 -11.70584 -11.69230 -11.33402 -11.00419 -10.93093 -10.68363 -10.31719 -10.14788 -9.97468 -9.91125 -9.72538 -9.46210 -9.09455 -8.55381 -6.99213 -5.93759 -3.30623 0.32952 0.96624 1.16050 2.08385 2.63204 2.97422 3.05351 3.31337 3.48248 3.48503 3.51075 3.53779 4.02824 4.24739 4.53114 4.59305 4.89689 4.91583 4.98854 5.11026 5.17234 5.23620 5.42233 5.71651 5.77099 5.81385 5.90719 5.99404 6.09689 6.23445 6.32964 6.40424 6.43858 6.50264 6.57627 6.62872 6.71475 6.91024 7.49176 7.95279 8.10523 8.34519 8.94207 9.72057 10.07504 11.22109 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002532 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.246771 B =11053.710308 C =11400.866941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.600 5.600 7 C -0.259 4.259 8 H 0.087 0.913 9 C 0.024 3.976 10 N -0.907 5.907 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.144 3.856 16 C 0.130 3.870 17 H 0.095 0.905 18 N -0.699 5.699 19 C 0.598 3.402 20 O -0.521 6.521 21 C -0.062 4.062 22 C 0.056 3.944 23 O -0.168 6.168 24 C 0.089 3.911 25 C 0.588 3.412 26 F -0.152 7.152 27 F -0.156 7.156 28 F -0.142 7.142 29 N -0.389 5.389 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.263 0.737 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.404 0.596 41 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.430 13.121 -15.150 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.387 4.387 8 H 0.105 0.895 9 C -0.175 4.175 10 N -0.550 5.550 11 Si 0.713 3.287 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.016 3.984 16 C 0.025 3.975 17 H 0.113 0.887 18 N -0.348 5.348 19 C 0.381 3.619 20 O -0.396 6.396 21 C -0.185 4.185 22 C -0.019 4.019 23 O -0.051 6.051 24 C -0.120 4.120 25 C 0.532 3.468 26 F -0.133 7.133 27 F -0.137 7.137 28 F -0.122 7.122 29 N -0.121 5.121 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.240 0.760 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.072 12.661 -14.649 25.814 hybrid contribution 0.134 0.897 0.126 0.916 sum -16.939 13.558 -14.523 26.109 Atomic orbital electron populations 1.21850 0.95409 1.01862 1.01126 1.21310 0.95174 0.99696 0.94948 0.91151 1.22072 0.98260 1.00699 0.95510 1.21422 0.91751 0.97029 0.90240 1.44279 1.48689 1.40451 0.98990 1.18939 1.09670 1.02575 1.07559 0.89545 1.25262 0.97396 0.96669 0.98171 1.69843 1.32555 1.21963 1.30646 0.86955 0.76303 0.84835 0.80570 1.21583 1.23175 1.19611 1.21217 0.90062 0.96979 0.90122 1.21867 0.96606 0.97385 0.81624 0.88732 1.45911 1.64350 1.14835 1.09740 1.16552 0.78351 0.85644 0.81381 1.90917 1.50037 1.14766 1.83927 1.22197 1.09244 0.89605 0.97410 1.25814 0.93718 0.94292 0.88030 1.84408 1.62501 1.17960 1.40250 1.25414 1.08905 0.89907 0.87813 1.15957 0.75715 0.79594 0.75552 1.93332 1.55639 1.76886 1.87476 1.93307 1.66422 1.94397 1.59591 1.93331 1.82315 1.78841 1.57762 1.70656 1.09198 1.15644 1.16617 0.92658 0.92727 0.93074 0.91304 0.92097 0.90657 0.95582 0.92757 0.91326 0.95833 0.76047 0.73492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.02 37.16 0.34 -1.39 16 2 C -0.09 -1.33 2.27 -90.57 -0.21 -1.54 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 5 C 0.12 2.57 4.20 -3.71 -0.02 2.55 16 6 N -0.60 -14.25 2.77 -172.31 -0.48 -14.73 16 7 C -0.26 -7.32 10.03 -15.06 -0.15 -7.47 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 9 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 10 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 11 Si 0.88 22.30 24.34 -169.99 -4.14 18.16 16 12 H -0.29 -6.96 6.62 56.52 0.37 -6.58 16 13 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 14 H -0.27 -6.71 6.63 56.52 0.37 -6.34 16 15 C 0.14 2.89 6.09 -3.71 -0.02 2.86 16 16 C 0.13 2.14 2.06 -67.81 -0.14 2.00 16 17 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 18 N -0.70 -9.56 4.37 -54.77 -0.24 -9.80 16 19 C 0.60 8.49 7.78 -12.52 -0.10 8.39 16 20 O -0.52 -9.09 16.55 5.27 0.09 -9.00 16 21 C -0.06 -0.70 6.99 -83.02 -0.58 -1.28 16 22 C 0.06 0.47 11.95 29.96 0.36 0.83 16 23 O -0.17 -1.44 10.70 6.51 0.07 -1.37 16 24 C 0.09 0.84 7.53 -13.08 -0.10 0.74 16 25 C 0.59 4.64 3.57 36.01 0.13 4.77 16 26 F -0.15 -1.23 17.30 2.25 0.04 -1.19 16 27 F -0.16 -1.15 17.28 2.25 0.04 -1.11 16 28 F -0.14 -1.17 17.23 2.25 0.04 -1.13 16 29 N -0.39 -4.27 10.96 -7.65 -0.08 -4.35 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.56 7.35 -51.93 -0.38 0.17 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.76 4.49 -51.93 -0.23 1.53 16 36 H 0.03 0.55 7.08 -51.93 -0.37 0.18 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 4.77 8.03 -40.82 -0.33 4.44 16 41 H 0.25 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -32.49 353.68 -3.97 -36.46 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.69 Total: 1.11 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.72 Total: 8.82 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.03 Total: -56.08 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.16 Total: -10.37 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.12 Total: -3.43 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.49 -3.97 -36.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967257914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.988 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds