Wall clock time and date at job start Wed Apr 1 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.44835 * 2 1 4 4 C 1.53042 * 109.45847 * 119.96470 * 2 1 3 5 5 C 1.53195 * 109.30838 * 181.38438 * 4 2 1 6 6 N 1.46926 * 108.77673 * 305.36259 * 5 4 2 7 7 C 1.36930 * 120.63319 * 233.63080 * 6 5 4 8 8 H 1.07996 * 120.00264 * 152.61053 * 7 6 5 9 9 C 1.38813 * 119.99967 * 332.61064 * 7 6 5 10 10 N 1.31619 * 119.99973 * 159.36834 * 9 7 6 11 11 Si 1.86796 * 119.99998 * 339.36840 * 9 7 6 12 12 H 1.48506 * 109.47276 * 92.93188 * 11 9 7 13 13 H 1.48503 * 109.47290 * 212.92983 * 11 9 7 14 14 H 1.48494 * 109.47373 * 332.93029 * 11 9 7 15 15 C 1.46930 * 118.73549 * 53.61469 * 6 5 4 16 16 C 1.53039 * 109.45677 * 240.03430 * 2 1 3 17 17 H 1.08999 * 109.52402 * 298.58000 * 16 2 1 18 18 N 1.46494 * 109.50157 * 58.66417 * 16 2 1 19 19 C 1.34773 * 120.00323 * 204.83811 * 18 16 2 20 20 O 1.21612 * 119.99886 * 359.97438 * 19 18 16 21 21 C 1.47418 * 120.00535 * 179.97438 * 19 18 16 22 22 C 1.36095 * 126.45140 * 179.97438 * 21 19 18 23 23 O 1.34256 * 106.94797 * 180.21995 * 22 21 19 24 24 C 1.34052 * 108.22609 * 359.61366 * 23 22 21 25 25 C 1.50703 * 125.37786 * 180.17391 * 24 23 22 26 26 F 1.39896 * 109.47512 * 270.25928 * 25 24 23 27 27 F 1.39902 * 109.46931 * 30.25887 * 25 24 23 28 28 F 1.39903 * 109.47240 * 150.25735 * 25 24 23 29 29 N 1.29933 * 109.24732 * 0.39748 * 24 23 22 30 30 H 1.08999 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46663 * 299.96884 * 1 2 3 32 32 H 1.08995 * 109.46884 * 59.96223 * 1 2 3 33 33 H 1.08999 * 109.49850 * 61.43651 * 4 2 1 34 34 H 1.08995 * 109.52550 * 301.34872 * 4 2 1 35 35 H 1.09001 * 109.58433 * 185.57970 * 5 4 2 36 36 H 1.09003 * 109.58910 * 65.15483 * 5 4 2 37 37 H 0.97005 * 119.99797 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58263 * 186.60405 * 15 6 5 39 39 H 1.08996 * 109.70758 * 66.24693 * 15 6 5 40 40 H 0.97003 * 119.99781 * 24.83214 * 18 16 2 41 41 H 1.07989 * 126.52459 * 359.96042 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9757 -2.2740 0.0000 8 1 5.0118 -2.9634 -0.8305 9 6 5.8498 -2.4270 1.0674 10 7 6.4261 -3.5902 1.2846 11 14 6.2082 -0.9820 2.1957 12 1 5.2794 -1.0160 3.3539 13 1 7.6088 -1.0689 2.6817 14 1 6.0214 0.2876 1.4485 15 6 3.5714 -0.6886 -1.2643 16 6 2.0398 -0.7207 -1.2501 17 1 1.6978 -1.7556 -1.2389 18 7 1.5256 -0.0487 -2.4459 19 6 1.4002 -0.7314 -3.6012 20 8 1.7143 -1.9052 -3.6511 21 6 0.8821 -0.0553 -4.8045 22 6 0.7029 -0.6146 -6.0322 23 8 0.2199 0.3479 -6.8339 24 6 0.0967 1.4714 -6.1131 25 6 -0.4152 2.7899 -6.6331 26 9 0.6544 3.5424 -7.1299 27 9 -1.3393 2.5599 -7.6580 28 9 -1.0362 3.4916 -5.5942 29 7 0.4928 1.2453 -4.8965 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5134 0.8903 32 1 -0.3633 0.5144 -0.8896 33 1 1.6979 -1.7556 1.2384 34 1 1.6573 -0.2212 2.1401 35 1 3.9418 -1.2845 2.0984 36 1 3.9144 0.3410 1.3673 37 1 7.0372 -3.6970 2.0303 38 1 3.9417 -1.2846 -2.0984 39 1 3.9143 0.3406 -1.3700 40 1 1.2753 0.8876 -2.4062 41 1 0.9136 -1.6367 -6.3098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967257914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:08 Heat of formation + Delta-G solvation = -154.679394 kcal Electronic energy + Delta-G solvation = -30890.219854 eV Core-core repulsion = 25971.142743 eV Total energy + Delta-G solvation = -4919.077111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.52010 -49.03293 -49.02307 -44.99287 -41.17399 -39.40230 -36.52839 -36.30652 -34.57600 -33.41863 -32.78153 -30.94086 -29.23136 -28.09211 -26.26312 -25.36654 -24.01853 -23.34389 -22.93640 -21.91017 -21.31069 -20.16409 -20.00583 -19.68556 -18.83998 -18.63731 -18.13181 -17.64103 -17.37298 -16.98857 -16.36682 -15.85507 -15.80394 -15.64410 -15.57535 -15.39247 -15.27422 -15.16649 -15.11669 -15.10738 -14.98934 -14.65057 -14.43772 -14.14934 -13.78094 -13.61429 -13.31483 -12.98905 -12.72179 -12.63798 -12.52466 -12.48961 -12.22235 -11.81963 -11.66054 -11.54060 -11.33261 -11.24146 -10.81762 -10.75628 -10.23620 -8.95008 -8.17925 -5.51834 -0.39657 0.27947 0.28625 1.29899 1.36016 1.41963 1.51776 1.84748 1.98627 2.04001 2.40842 2.84444 2.90763 3.02953 3.15373 3.32461 3.46181 3.68338 3.83519 3.89647 3.98368 4.22893 4.29324 4.31907 4.41148 4.50266 4.55901 4.80556 4.82746 4.93394 4.97283 5.01053 5.09844 5.13617 5.28424 5.38127 5.51982 5.71251 5.83845 6.10213 6.38641 6.87804 7.00610 7.58734 7.96889 9.02229 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002532 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.246771 B =11053.710308 C =11400.866941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.090 0.910 4 C -0.119 4.119 5 C 0.113 3.887 6 N -0.615 5.615 7 C -0.254 4.254 8 H 0.041 0.959 9 C -0.035 4.035 10 N -0.958 5.958 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.312 1.312 14 H -0.259 1.259 15 C 0.144 3.856 16 C 0.145 3.855 17 H 0.065 0.935 18 N -0.689 5.689 19 C 0.600 3.400 20 O -0.561 6.561 21 C -0.091 4.091 22 C 0.086 3.914 23 O -0.161 6.161 24 C 0.091 3.909 25 C 0.597 3.403 26 F -0.152 7.152 27 F -0.150 7.150 28 F -0.142 7.142 29 N -0.400 5.400 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.417 0.583 41 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.588 16.146 -15.223 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.108 0.892 4 C -0.158 4.158 5 C -0.011 4.011 6 N -0.340 5.340 7 C -0.384 4.384 8 H 0.058 0.942 9 C -0.230 4.230 10 N -0.604 5.604 11 Si 0.783 3.217 12 H -0.193 1.193 13 H -0.240 1.240 14 H -0.183 1.183 15 C 0.017 3.983 16 C 0.039 3.961 17 H 0.083 0.917 18 N -0.339 5.339 19 C 0.385 3.615 20 O -0.440 6.440 21 C -0.213 4.213 22 C 0.012 3.988 23 O -0.044 6.044 24 C -0.120 4.120 25 C 0.541 3.459 26 F -0.133 7.133 27 F -0.132 7.132 28 F -0.123 7.123 29 N -0.132 5.132 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.255 0.745 41 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -19.291 15.756 -14.734 28.939 hybrid contribution 0.773 -0.102 -0.008 0.780 sum -18.518 15.654 -14.742 28.377 Atomic orbital electron populations 1.21772 0.92862 1.01850 1.02890 1.21282 0.97148 0.99755 0.92235 0.89201 1.21987 0.94807 1.00741 0.98285 1.21555 0.94848 0.96793 0.87926 1.44347 1.48419 1.39956 1.01309 1.18782 1.10687 1.02851 1.06036 0.94163 1.25955 0.97461 0.99139 1.00440 1.69989 1.34048 1.24237 1.32121 0.85796 0.75697 0.81163 0.79076 1.19306 1.24050 1.18297 1.21275 0.92666 0.96632 0.87683 1.21410 0.93815 0.96785 0.84048 0.91707 1.45702 1.63993 1.15294 1.08937 1.16851 0.77369 0.85195 0.82072 1.90901 1.51794 1.16605 1.84676 1.21771 1.11958 0.90319 0.97220 1.26386 0.90654 0.94938 0.86844 1.84459 1.62221 1.17783 1.39922 1.25647 1.08395 0.90488 0.87472 1.15767 0.75665 0.78951 0.75527 1.93335 1.55737 1.76784 1.87454 1.93323 1.66190 1.94332 1.59306 1.93332 1.82314 1.78775 1.57904 1.70570 1.09691 1.15439 1.17509 0.93608 0.90480 0.91795 0.92935 0.88520 0.93007 0.94012 0.92819 0.94430 0.94269 0.74507 0.70558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.02 71.98 0.65 -2.12 16 2 C -0.09 -2.22 2.27 -10.76 -0.02 -2.25 16 3 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 4 C -0.12 -3.69 5.36 30.67 0.16 -3.52 16 5 C 0.11 4.61 4.20 86.36 0.36 4.98 16 6 N -0.62 -29.60 2.77 -699.08 -1.94 -31.54 16 7 C -0.25 -15.02 10.03 84.03 0.84 -14.18 16 8 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 9 C -0.04 -2.11 5.23 84.86 0.44 -1.66 16 10 N -0.96 -61.58 13.97 21.65 0.30 -61.28 16 11 Si 0.95 46.58 24.34 68.60 1.67 48.25 16 12 H -0.27 -12.02 6.62 99.48 0.66 -11.36 16 13 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 14 H -0.26 -11.96 6.63 99.48 0.66 -11.30 16 15 C 0.14 5.86 6.09 86.36 0.53 6.38 16 16 C 0.15 4.71 2.06 45.07 0.09 4.80 16 17 H 0.06 2.51 7.58 -2.39 -0.02 2.50 16 18 N -0.69 -18.11 4.37 -445.44 -1.95 -20.05 16 19 C 0.60 16.84 7.78 86.66 0.67 17.51 16 20 O -0.56 -20.09 16.55 -4.07 -0.07 -20.15 16 21 C -0.09 -1.94 6.99 40.41 0.28 -1.65 16 22 C 0.09 1.28 11.95 67.32 0.80 2.09 16 23 O -0.16 -2.37 10.70 0.36 0.00 -2.36 16 24 C 0.09 1.51 7.53 88.39 0.67 2.17 16 25 C 0.60 8.17 3.57 71.24 0.25 8.42 16 26 F -0.15 -2.16 17.30 44.97 0.78 -1.38 16 27 F -0.15 -1.88 17.28 44.97 0.78 -1.10 16 28 F -0.14 -2.06 17.23 44.97 0.78 -1.28 16 29 N -0.40 -8.01 10.96 -293.03 -3.21 -11.22 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.15 7.35 -2.39 -0.02 1.13 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.05 2.36 4.49 -2.39 -0.01 2.35 16 36 H 0.04 1.59 7.08 -2.39 -0.02 1.58 16 37 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 38 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.42 8.89 8.03 -92.71 -0.74 8.15 16 41 H 0.28 2.18 8.06 -2.92 -0.02 2.15 16 Total: -1.00 -74.49 353.68 3.15 -71.34 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.26 Total: 9.82 kcal Atomic # 6 Polarization: 15.23 SS G_CDS: 5.74 Total: 20.97 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -6.79 Total: -124.09 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 2.33 Total: -3.77 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -74.49 3.15 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967257914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.338 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds