Wall clock time and date at job start Wed Apr 1 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46404 * 2 1 4 4 C 1.53356 * 109.41688 * 240.09847 * 2 1 3 5 5 C 1.53191 * 109.14964 * 178.67719 * 4 2 1 6 6 N 1.46928 * 108.89538 * 54.57649 * 5 4 2 7 7 C 1.36940 * 120.63031 * 126.34245 * 6 5 4 8 8 H 1.07993 * 119.99899 * 332.60187 * 7 6 5 9 9 C 1.38812 * 120.00082 * 152.60947 * 7 6 5 10 10 N 1.31608 * 120.00226 * 159.35551 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 339.35154 * 9 7 6 12 12 H 1.48501 * 109.46946 * 92.92249 * 11 9 7 13 13 H 1.48496 * 109.46962 * 212.92719 * 11 9 7 14 14 H 1.48503 * 109.47163 * 332.92483 * 11 9 7 15 15 C 1.46923 * 118.73774 * 306.32499 * 6 5 4 16 16 C 1.53042 * 109.46119 * 119.97587 * 2 1 3 17 17 H 1.09001 * 109.52419 * 61.41413 * 16 2 1 18 18 N 1.46504 * 109.49462 * 301.33686 * 16 2 1 19 19 C 1.34775 * 120.00261 * 155.16147 * 18 16 2 20 20 O 1.21622 * 119.99685 * 359.97438 * 19 18 16 21 21 C 1.47413 * 120.00188 * 179.97438 * 19 18 16 22 22 C 1.36096 * 126.44920 * 179.71371 * 21 19 18 23 23 O 1.34255 * 106.94810 * 179.90496 * 22 21 19 24 24 C 1.34049 * 108.22905 * 0.36392 * 23 22 21 25 25 C 1.50703 * 125.37770 * 179.73722 * 24 23 22 26 26 F 1.39896 * 109.47214 * 270.03711 * 25 24 23 27 27 F 1.39893 * 109.47175 * 30.04252 * 25 24 23 28 28 F 1.39900 * 109.47032 * 150.03997 * 25 24 23 29 29 N 1.29937 * 109.24181 * 359.76804 * 24 23 22 30 30 H 1.08996 * 109.46845 * 300.02517 * 1 2 3 31 31 H 1.08996 * 109.46880 * 60.02723 * 1 2 3 32 32 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.68260 * 58.71566 * 4 2 1 34 34 H 1.08996 * 109.47462 * 298.51276 * 4 2 1 35 35 H 1.09001 * 109.58680 * 294.72224 * 5 4 2 36 36 H 1.08993 * 109.58965 * 174.43801 * 5 4 2 37 37 H 0.97000 * 120.00102 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58847 * 173.39167 * 15 6 5 39 39 H 1.08998 * 109.58992 * 293.81447 * 15 6 5 40 40 H 0.96996 * 119.99814 * 335.15662 * 18 16 2 41 41 H 1.07996 * 126.52162 * 0.03210 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2538 5 6 3.5714 -0.6886 -1.2644 6 7 4.0679 -1.2489 -0.0002 7 6 4.9764 -2.2735 -0.0003 8 1 5.0127 -2.9629 -0.8308 9 6 5.8506 -2.4262 1.0671 10 7 6.4274 -3.5890 1.2843 11 14 6.2085 -0.9809 2.1953 12 1 5.2795 -1.0151 3.3533 13 1 7.6090 -1.0672 2.6812 14 1 6.0213 0.2887 1.4479 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7210 1.2500 17 1 1.6978 -1.7558 1.2386 18 7 1.5256 -0.0490 2.4459 19 6 1.4002 -0.7318 3.6011 20 8 1.7135 -1.9060 3.6506 21 6 0.8832 -0.0556 4.8047 22 6 0.6985 -0.6164 6.0309 23 8 0.2162 0.3461 6.8329 24 6 0.0992 1.4714 6.1139 25 6 -0.4117 2.7902 6.6344 26 9 -1.7981 2.8551 6.4594 27 9 -0.1074 2.9039 7.9951 28 9 0.1964 3.8360 5.9316 29 7 0.4952 1.2453 4.8972 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9143 0.3410 -1.3673 36 1 3.9437 -1.2829 -2.0987 37 1 7.0385 -3.6955 2.0300 38 1 3.9417 -1.2849 2.0983 39 1 3.9143 0.3406 1.3674 40 1 1.2754 0.8873 2.4064 41 1 0.9032 -1.6403 6.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967257915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:14 Heat of formation + Delta-G solvation = -129.264474 kcal Electronic energy + Delta-G solvation = -31319.726079 eV Core-core repulsion = 26401.751041 eV Total energy + Delta-G solvation = -4917.975038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.86086 -48.38746 -48.35371 -44.17089 -39.86245 -37.92658 -35.62714 -34.60425 -33.26955 -31.93248 -31.37153 -29.48030 -27.71334 -27.29063 -24.90172 -23.89325 -22.92159 -22.45204 -21.27952 -20.70675 -19.92642 -19.33850 -19.17333 -18.94541 -17.72926 -17.33937 -16.89565 -16.78486 -15.95486 -15.25551 -15.17324 -15.13227 -14.73977 -14.71163 -14.52140 -14.46036 -14.45248 -14.22675 -13.94585 -13.72009 -13.48382 -13.38641 -13.32013 -12.48215 -12.39462 -12.09232 -11.98885 -11.87585 -11.64137 -11.42415 -10.90037 -10.73901 -10.55659 -10.34927 -10.25246 -9.93204 -9.89921 -9.76621 -9.46907 -8.95851 -8.53548 -6.98536 -5.94087 -3.30311 0.39133 1.01660 1.22695 2.13456 2.67401 3.03679 3.14295 3.35842 3.48349 3.50580 3.53115 3.57846 4.09339 4.31082 4.54901 4.65417 4.94286 4.95809 5.00786 5.10322 5.21580 5.26785 5.43674 5.72872 5.78720 5.82807 5.91067 6.00005 6.09743 6.25693 6.29436 6.45117 6.47715 6.51468 6.60548 6.62886 6.73050 6.91795 7.56078 7.95664 8.19261 8.33967 8.93505 9.72746 10.08488 11.21745 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.003281 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.435530 B = 8532.819740 C = 9512.161829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.144 3.856 6 N -0.600 5.600 7 C -0.263 4.263 8 H 0.088 0.912 9 C 0.029 3.971 10 N -0.904 5.904 11 Si 0.878 3.122 12 H -0.288 1.288 13 H -0.302 1.302 14 H -0.271 1.271 15 C 0.119 3.881 16 C 0.131 3.869 17 H 0.096 0.904 18 N -0.701 5.701 19 C 0.594 3.406 20 O -0.516 6.516 21 C -0.062 4.062 22 C 0.056 3.944 23 O -0.168 6.168 24 C 0.088 3.912 25 C 0.589 3.411 26 F -0.153 7.153 27 F -0.156 7.156 28 F -0.141 7.141 29 N -0.389 5.389 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.066 0.934 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.404 0.596 41 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.308 13.004 9.152 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.166 4.166 5 C 0.019 3.981 6 N -0.324 5.324 7 C -0.391 4.391 8 H 0.105 0.895 9 C -0.170 4.170 10 N -0.546 5.546 11 Si 0.709 3.291 12 H -0.216 1.216 13 H -0.231 1.231 14 H -0.196 1.196 15 C -0.008 4.008 16 C 0.026 3.974 17 H 0.114 0.886 18 N -0.351 5.351 19 C 0.377 3.623 20 O -0.391 6.391 21 C -0.184 4.184 22 C -0.018 4.018 23 O -0.051 6.051 24 C -0.122 4.122 25 C 0.532 3.468 26 F -0.134 7.134 27 F -0.137 7.137 28 F -0.122 7.122 29 N -0.121 5.121 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.239 0.761 41 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -16.948 12.536 8.807 22.846 hybrid contribution 0.127 0.890 1.410 1.673 sum -16.820 13.426 10.217 23.824 Atomic orbital electron populations 1.21845 0.95428 1.01845 1.01110 1.21368 0.95157 0.99696 0.94949 0.91165 1.22126 0.98490 1.00523 0.95441 1.20999 0.91089 0.96678 0.89378 1.44279 1.48502 1.40552 0.99060 1.18899 1.09548 1.03018 1.07659 0.89472 1.25242 0.97302 0.96513 0.97958 1.69826 1.32372 1.21908 1.30510 0.87007 0.76286 0.84908 0.80907 1.21605 1.23062 1.19631 1.21710 0.90688 0.97334 0.91023 1.21933 0.96349 0.97447 0.81688 0.88634 1.45939 1.64545 1.14788 1.09850 1.16591 0.78475 0.85760 0.81436 1.90940 1.49584 1.14728 1.83840 1.22209 1.09155 0.89583 0.97481 1.25826 0.93665 0.94342 0.88013 1.84402 1.62593 1.17820 1.40290 1.25415 1.08939 0.89947 0.87878 1.15942 0.75685 0.79705 0.75424 1.93321 1.28808 1.96285 1.95012 1.93306 1.92811 1.96118 1.31447 1.93333 1.82906 1.57390 1.78586 1.70644 1.09222 1.15632 1.16608 0.93081 0.92740 0.92676 0.91956 0.91554 0.95852 0.91559 0.92736 0.90242 0.95679 0.76136 0.73450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 2 C -0.09 -1.35 2.27 -90.41 -0.21 -1.55 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -1.93 5.39 -26.45 -0.14 -2.08 16 5 C 0.14 2.74 6.50 -3.71 -0.02 2.72 16 6 N -0.60 -14.29 2.77 -172.33 -0.48 -14.76 16 7 C -0.26 -7.44 10.03 -15.06 -0.15 -7.59 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.03 0.87 5.23 -17.44 -0.09 0.78 16 10 N -0.90 -28.26 13.97 55.49 0.78 -27.48 16 11 Si 0.88 23.16 24.35 -169.99 -4.14 19.02 16 12 H -0.29 -7.58 6.62 56.52 0.37 -7.21 16 13 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 14 H -0.27 -6.96 6.64 56.52 0.38 -6.58 16 15 C 0.12 2.67 3.78 -3.71 -0.01 2.65 16 16 C 0.13 2.35 2.07 -67.81 -0.14 2.21 16 17 H 0.10 1.94 7.58 -51.93 -0.39 1.55 16 18 N -0.70 -10.96 4.37 -54.76 -0.24 -11.20 16 19 C 0.59 9.80 7.78 -12.53 -0.10 9.71 16 20 O -0.52 -10.35 16.55 5.26 0.09 -10.27 16 21 C -0.06 -0.82 6.99 -83.02 -0.58 -1.40 16 22 C 0.06 0.57 11.95 29.96 0.36 0.93 16 23 O -0.17 -1.66 10.70 6.52 0.07 -1.59 16 24 C 0.09 0.93 7.53 -13.08 -0.10 0.84 16 25 C 0.59 5.17 3.57 36.01 0.13 5.30 16 26 F -0.15 -1.29 17.30 2.25 0.04 -1.26 16 27 F -0.16 -1.30 17.28 2.25 0.04 -1.26 16 28 F -0.14 -1.32 17.23 2.25 0.04 -1.28 16 29 N -0.39 -4.82 10.96 -7.65 -0.08 -4.90 16 30 H 0.05 0.58 7.35 -51.93 -0.38 0.19 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.08 2.06 4.50 -51.93 -0.23 1.82 16 39 H 0.03 0.56 7.07 -51.93 -0.37 0.19 16 40 H 0.40 5.37 8.03 -40.82 -0.33 5.04 16 41 H 0.25 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -33.40 353.70 -3.97 -37.37 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.69 Total: 1.17 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -0.72 Total: 11.11 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.03 Total: -58.34 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.16 Total: -11.86 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.12 Total: -3.80 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -4.14 Total: 19.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.40 -3.97 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967257915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.895 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds