Wall clock time and date at job start Wed Apr 1 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46404 * 2 1 4 4 C 1.53356 * 109.41688 * 240.09847 * 2 1 3 5 5 C 1.53191 * 109.14964 * 178.67719 * 4 2 1 6 6 N 1.46928 * 108.89538 * 54.57649 * 5 4 2 7 7 C 1.36940 * 120.63031 * 126.34245 * 6 5 4 8 8 H 1.07993 * 119.99899 * 332.60187 * 7 6 5 9 9 C 1.38812 * 120.00082 * 152.60947 * 7 6 5 10 10 N 1.31608 * 120.00226 * 159.35551 * 9 7 6 11 11 Si 1.86806 * 119.99740 * 339.35154 * 9 7 6 12 12 H 1.48501 * 109.46946 * 92.92249 * 11 9 7 13 13 H 1.48496 * 109.46962 * 212.92719 * 11 9 7 14 14 H 1.48503 * 109.47163 * 332.92483 * 11 9 7 15 15 C 1.46923 * 118.73774 * 306.32499 * 6 5 4 16 16 C 1.53042 * 109.46119 * 119.97587 * 2 1 3 17 17 H 1.09001 * 109.52419 * 61.41413 * 16 2 1 18 18 N 1.46504 * 109.49462 * 301.33686 * 16 2 1 19 19 C 1.34775 * 120.00261 * 155.16147 * 18 16 2 20 20 O 1.21622 * 119.99685 * 359.97438 * 19 18 16 21 21 C 1.47413 * 120.00188 * 179.97438 * 19 18 16 22 22 C 1.36096 * 126.44920 * 179.71371 * 21 19 18 23 23 O 1.34255 * 106.94810 * 179.90496 * 22 21 19 24 24 C 1.34049 * 108.22905 * 0.36392 * 23 22 21 25 25 C 1.50703 * 125.37770 * 179.73722 * 24 23 22 26 26 F 1.39896 * 109.47214 * 270.03711 * 25 24 23 27 27 F 1.39893 * 109.47175 * 30.04252 * 25 24 23 28 28 F 1.39900 * 109.47032 * 150.03997 * 25 24 23 29 29 N 1.29937 * 109.24181 * 359.76804 * 24 23 22 30 30 H 1.08996 * 109.46845 * 300.02517 * 1 2 3 31 31 H 1.08996 * 109.46880 * 60.02723 * 1 2 3 32 32 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.68260 * 58.71566 * 4 2 1 34 34 H 1.08996 * 109.47462 * 298.51276 * 4 2 1 35 35 H 1.09001 * 109.58680 * 294.72224 * 5 4 2 36 36 H 1.08993 * 109.58965 * 174.43801 * 5 4 2 37 37 H 0.97000 * 120.00102 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58847 * 173.39167 * 15 6 5 39 39 H 1.08998 * 109.58992 * 293.81447 * 15 6 5 40 40 H 0.96996 * 119.99814 * 335.15662 * 18 16 2 41 41 H 1.07996 * 126.52162 * 0.03210 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2538 5 6 3.5714 -0.6886 -1.2644 6 7 4.0679 -1.2489 -0.0002 7 6 4.9764 -2.2735 -0.0003 8 1 5.0127 -2.9629 -0.8308 9 6 5.8506 -2.4262 1.0671 10 7 6.4274 -3.5890 1.2843 11 14 6.2085 -0.9809 2.1953 12 1 5.2795 -1.0151 3.3533 13 1 7.6090 -1.0672 2.6812 14 1 6.0213 0.2887 1.4479 15 6 3.5714 -0.6888 1.2641 16 6 2.0399 -0.7210 1.2500 17 1 1.6978 -1.7558 1.2386 18 7 1.5256 -0.0490 2.4459 19 6 1.4002 -0.7318 3.6011 20 8 1.7135 -1.9060 3.6506 21 6 0.8832 -0.0556 4.8047 22 6 0.6985 -0.6164 6.0309 23 8 0.2162 0.3461 6.8329 24 6 0.0992 1.4714 6.1139 25 6 -0.4117 2.7902 6.6344 26 9 -1.7981 2.8551 6.4594 27 9 -0.1074 2.9039 7.9951 28 9 0.1964 3.8360 5.9316 29 7 0.4952 1.2453 4.8972 30 1 -0.3633 0.5142 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6593 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9143 0.3410 -1.3673 36 1 3.9437 -1.2829 -2.0987 37 1 7.0385 -3.6955 2.0300 38 1 3.9417 -1.2849 2.0983 39 1 3.9143 0.3406 1.3674 40 1 1.2754 0.8873 2.4064 41 1 0.9032 -1.6403 6.3067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967257915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:13 Heat of formation + Delta-G solvation = -155.388654 kcal Electronic energy + Delta-G solvation = -31320.858908 eV Core-core repulsion = 26401.751041 eV Total energy + Delta-G solvation = -4919.107867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.55231 -49.06457 -49.05142 -45.04387 -41.22719 -39.39560 -36.57546 -36.24538 -34.75720 -33.34667 -32.83038 -30.93391 -29.22495 -28.12522 -26.14896 -25.60398 -24.11862 -23.42733 -22.72572 -21.97099 -21.26739 -20.18743 -20.03943 -19.71507 -18.93798 -18.67926 -18.17497 -17.74304 -17.49514 -16.95459 -16.26374 -15.93317 -15.84191 -15.81859 -15.55429 -15.42134 -15.24239 -15.18173 -15.14435 -15.13704 -15.04711 -14.66948 -14.39906 -14.18826 -13.87714 -13.53485 -13.36935 -13.02920 -12.91181 -12.60287 -12.53831 -12.36877 -12.25616 -11.78562 -11.74338 -11.67342 -11.31544 -11.24744 -10.87057 -10.79869 -10.25994 -8.96330 -8.22032 -5.52684 -0.45059 0.22690 0.24058 1.22947 1.29746 1.30820 1.38987 1.79862 1.93171 1.99933 2.35835 2.80436 2.87878 2.97939 3.14291 3.30826 3.42847 3.65640 3.77530 3.92452 3.98911 4.18082 4.25862 4.28879 4.35260 4.52873 4.66611 4.77148 4.84212 4.89362 4.98376 5.07503 5.14361 5.15351 5.29296 5.38926 5.55120 5.65686 5.83562 6.09018 6.32863 6.86296 6.95738 7.57949 7.97693 8.97907 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.003281 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.435530 B = 8532.819740 C = 9512.161829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.088 0.912 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.616 5.616 7 C -0.248 4.248 8 H 0.059 0.941 9 C -0.030 4.030 10 N -0.953 5.953 11 Si 0.940 3.060 12 H -0.293 1.293 13 H -0.306 1.306 14 H -0.256 1.256 15 C 0.119 3.881 16 C 0.143 3.857 17 H 0.065 0.935 18 N -0.692 5.692 19 C 0.594 3.406 20 O -0.561 6.561 21 C -0.093 4.093 22 C 0.086 3.914 23 O -0.159 6.159 24 C 0.092 3.908 25 C 0.599 3.401 26 F -0.148 7.148 27 F -0.150 7.150 28 F -0.143 7.143 29 N -0.400 5.400 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.261 0.739 38 H 0.039 0.961 39 H 0.033 0.967 40 H 0.418 0.582 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.568 15.910 9.525 26.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.107 0.893 4 C -0.156 4.156 5 C 0.012 3.988 6 N -0.341 5.341 7 C -0.377 4.377 8 H 0.077 0.923 9 C -0.225 4.225 10 N -0.599 5.599 11 Si 0.770 3.230 12 H -0.221 1.221 13 H -0.235 1.235 14 H -0.180 1.180 15 C -0.007 4.007 16 C 0.037 3.963 17 H 0.084 0.916 18 N -0.343 5.343 19 C 0.380 3.620 20 O -0.440 6.440 21 C -0.215 4.215 22 C 0.011 3.989 23 O -0.042 6.042 24 C -0.119 4.119 25 C 0.543 3.457 26 F -0.130 7.130 27 F -0.132 7.132 28 F -0.124 7.124 29 N -0.132 5.132 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.255 0.745 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -19.259 15.525 9.152 26.376 hybrid contribution 0.755 -0.030 1.274 1.481 sum -18.504 15.495 10.426 26.291 Atomic orbital electron populations 1.21770 0.92903 1.01831 1.02850 1.21366 0.97126 0.99734 0.92280 0.89336 1.22040 0.95431 1.00483 0.97656 1.21265 0.93672 0.97028 0.86822 1.44428 1.48162 1.40093 1.01410 1.18902 1.09543 1.03188 1.06095 0.92329 1.25834 0.98070 0.98494 1.00091 1.69949 1.34211 1.23807 1.31909 0.86004 0.75364 0.82506 0.79126 1.22058 1.23510 1.18049 1.21635 0.93719 0.96390 0.88981 1.21532 0.93318 0.97027 0.84414 0.91635 1.45776 1.64052 1.15338 1.09144 1.16957 0.77471 0.85321 0.82291 1.90917 1.51604 1.16746 1.84698 1.21766 1.12025 0.90466 0.97239 1.26364 0.90681 0.95022 0.86839 1.84455 1.62265 1.17620 1.39875 1.25728 1.08149 0.90583 0.87463 1.15727 0.75700 0.78864 0.75458 1.93335 1.28427 1.96185 1.95008 1.93322 1.92801 1.96013 1.31023 1.93334 1.83001 1.57342 1.78705 1.70556 1.09780 1.15236 1.17592 0.92259 0.90083 0.93616 0.87847 0.93060 0.93976 0.92186 0.93021 0.94283 0.94882 0.74479 0.70667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.02 71.98 0.65 -2.12 16 2 C -0.09 -2.25 2.27 -10.66 -0.02 -2.27 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.12 -3.27 5.39 30.78 0.17 -3.10 16 5 C 0.14 4.96 6.50 86.36 0.56 5.52 16 6 N -0.62 -29.40 2.77 -699.12 -1.94 -31.34 16 7 C -0.25 -14.44 10.03 84.03 0.84 -13.60 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 9 C -0.03 -1.82 5.23 84.86 0.44 -1.37 16 10 N -0.95 -62.18 13.97 21.65 0.30 -61.88 16 11 Si 0.94 49.38 24.35 68.60 1.67 51.05 16 12 H -0.29 -15.40 6.62 99.48 0.66 -14.75 16 13 H -0.31 -16.09 7.11 99.48 0.71 -15.39 16 14 H -0.26 -12.62 6.64 99.48 0.66 -11.96 16 15 C 0.12 5.30 3.78 86.36 0.33 5.62 16 16 C 0.14 5.03 2.07 45.07 0.09 5.12 16 17 H 0.07 2.72 7.58 -2.39 -0.02 2.70 16 18 N -0.69 -20.85 4.37 -445.42 -1.95 -22.80 16 19 C 0.59 19.37 7.78 86.66 0.67 20.05 16 20 O -0.56 -23.02 16.55 -4.10 -0.07 -23.09 16 21 C -0.09 -2.33 6.99 40.41 0.28 -2.05 16 22 C 0.09 1.56 11.95 67.32 0.80 2.37 16 23 O -0.16 -2.74 10.70 0.40 0.00 -2.73 16 24 C 0.09 1.73 7.53 88.39 0.67 2.39 16 25 C 0.60 9.09 3.57 71.24 0.25 9.34 16 26 F -0.15 -2.15 17.30 44.97 0.78 -1.37 16 27 F -0.15 -2.15 17.28 44.97 0.78 -1.37 16 28 F -0.14 -2.34 17.23 44.97 0.77 -1.57 16 29 N -0.40 -9.09 10.96 -293.04 -3.21 -12.30 16 30 H 0.06 1.12 7.35 -2.39 -0.02 1.10 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 37 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 38 H 0.04 2.06 4.50 -2.39 -0.01 2.05 16 39 H 0.03 1.42 7.07 -2.39 -0.02 1.40 16 40 H 0.42 10.18 8.03 -92.71 -0.74 9.44 16 41 H 0.28 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -76.19 353.70 3.15 -73.04 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.26 Total: 8.46 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 5.74 Total: 25.89 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -6.79 Total: -128.32 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 2.33 Total: -4.31 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.67 Total: 51.05 kcal Total: -76.19 3.15 -73.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967257915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.347 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds