Wall clock time and date at job start Wed Apr 1 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.45951 * 2 1 4 4 C 1.53035 * 109.46221 * 240.04340 * 2 1 3 5 5 C 1.53195 * 109.31642 * 178.61659 * 4 2 1 6 6 N 1.46922 * 108.77454 * 54.62941 * 5 4 2 7 7 C 1.36942 * 120.63160 * 126.37291 * 6 5 4 8 8 H 1.08001 * 119.99654 * 331.83009 * 7 6 5 9 9 C 1.38813 * 120.00148 * 151.82749 * 7 6 5 10 10 N 1.31616 * 120.00160 * 343.09142 * 9 7 6 11 11 Si 1.86799 * 119.99698 * 163.09281 * 9 7 6 12 12 H 1.48499 * 109.47216 * 60.00031 * 11 9 7 13 13 H 1.48505 * 109.46913 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47013 * 299.99582 * 11 9 7 15 15 C 1.46930 * 118.74223 * 306.39653 * 6 5 4 16 16 C 1.53042 * 109.46058 * 119.97111 * 2 1 3 17 17 H 1.09001 * 109.49733 * 301.36970 * 16 2 1 18 18 N 1.46503 * 109.49784 * 61.43375 * 16 2 1 19 19 C 1.34766 * 120.00104 * 205.00013 * 18 16 2 20 20 O 1.21606 * 120.00388 * 0.02562 * 19 18 16 21 21 C 1.47400 * 119.99954 * 179.97438 * 19 18 16 22 22 C 1.37355 * 128.56562 * 359.67975 * 21 19 18 23 23 O 1.33495 * 106.34445 * 179.91017 * 22 21 19 24 24 N 1.20654 * 113.15611 * 0.38461 * 23 22 21 25 25 C 1.30021 * 112.30066 * 359.75898 * 24 23 22 26 26 C 1.50700 * 127.33517 * 179.97438 * 25 24 23 27 27 F 1.39897 * 109.47274 * 270.00378 * 26 25 24 28 28 F 1.39904 * 109.46936 * 30.00874 * 26 25 24 29 29 F 1.39902 * 109.46657 * 150.00245 * 26 25 24 30 30 H 1.09000 * 109.47195 * 300.03003 * 1 2 3 31 31 H 1.09002 * 109.47092 * 60.02551 * 1 2 3 32 32 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.49477 * 298.56452 * 4 2 1 34 34 H 1.08991 * 109.50072 * 58.66196 * 4 2 1 35 35 H 1.08999 * 109.58535 * 174.41860 * 5 4 2 36 36 H 1.09003 * 109.58169 * 294.70520 * 5 4 2 37 37 H 0.96997 * 120.00192 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58259 * 293.81836 * 15 6 5 39 39 H 1.09004 * 109.58727 * 173.39787 * 15 6 5 40 40 H 0.96998 * 119.99729 * 24.72553 * 18 16 2 41 41 H 1.08001 * 126.82793 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2501 5 6 3.5714 -0.6884 -1.2643 6 7 4.0678 -1.2487 -0.0001 7 6 4.9757 -2.2739 -0.0002 8 1 5.0031 -2.9710 -0.8247 9 6 5.8609 -2.4172 1.0595 10 7 6.0660 -1.4137 1.8860 11 14 6.7611 -4.0344 1.3123 12 1 7.5846 -4.3352 0.1137 13 1 7.6415 -3.9298 2.5036 14 1 5.7733 -5.1234 1.5203 15 6 3.5713 -0.6887 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6567 -0.2213 2.1398 18 7 1.5801 -2.1118 1.2341 19 6 1.4516 -2.7923 2.3902 20 8 1.7167 -2.2517 3.4467 21 6 0.9885 -4.1916 2.3742 22 6 0.6372 -4.9650 1.2948 23 8 0.2895 -6.1573 1.7842 24 7 0.3698 -6.2184 2.9865 25 6 0.7824 -5.1024 3.5108 26 6 1.0021 -4.8052 4.9718 27 9 -0.1783 -4.3004 5.5276 28 9 1.3656 -5.9808 5.6373 29 9 2.0231 -3.8583 5.1065 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6978 -1.7554 -1.2385 34 1 1.6573 -0.2204 -2.1398 35 1 3.9416 -1.2843 -2.0985 36 1 3.9143 0.3409 -1.3698 37 1 6.6842 -1.5139 2.6266 38 1 3.9143 0.3408 1.3674 39 1 3.9417 -1.2847 2.0984 40 1 1.3644 -2.5417 0.3917 41 1 0.6425 -4.6679 0.2564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967397382.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:22 Heat of formation + Delta-G solvation = -96.200009 kcal Electronic energy + Delta-G solvation = -32802.858963 eV Core-core repulsion = 27886.317708 eV Total energy + Delta-G solvation = -4916.541255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.09060 -47.69345 -47.47192 -45.43396 -39.73713 -37.66279 -34.42647 -34.25816 -33.22350 -32.23779 -31.07966 -29.31764 -27.53651 -27.18502 -24.99698 -24.03875 -22.33960 -22.07984 -21.18774 -20.85505 -19.24982 -18.72514 -18.69997 -18.24419 -17.90990 -17.81141 -16.77963 -16.13048 -15.42456 -15.02130 -14.74671 -14.47665 -14.43301 -14.17709 -14.05063 -14.00223 -13.82386 -13.68120 -13.63227 -13.46155 -13.29739 -13.05194 -12.69645 -12.46313 -12.18473 -11.98115 -11.68190 -11.50258 -11.20776 -10.97578 -10.92397 -10.76867 -10.60531 -10.30726 -10.04430 -10.01416 -9.86780 -9.68327 -9.56672 -8.56033 -8.50570 -6.71000 -5.82018 -3.25869 0.84150 1.05790 2.20463 2.59512 3.27086 3.29420 3.34549 3.40973 3.43669 3.46710 3.65941 4.30356 4.37766 4.45513 4.51327 4.67010 5.00324 5.08056 5.13802 5.23204 5.26699 5.36615 5.47724 5.76792 5.82937 5.90267 6.05628 6.18547 6.26369 6.34386 6.42939 6.53038 6.66208 6.76365 6.87185 7.25859 7.56373 7.60627 7.74360 7.84834 8.41193 8.49592 9.16144 9.80150 10.35608 11.25821 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009778 B = 0.005214 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.026777 B = 5368.966439 C = 6673.191798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.285 1.285 15 C 0.159 3.841 16 C 0.127 3.873 17 H 0.080 0.920 18 N -0.685 5.685 19 C 0.583 3.417 20 O -0.514 6.514 21 C -0.192 4.192 22 C -0.003 4.003 23 O 0.129 5.871 24 N -0.301 5.301 25 C -0.041 4.041 26 C 0.557 3.443 27 F -0.167 7.167 28 F -0.171 7.171 29 F -0.132 7.132 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.256 0.744 38 H 0.028 0.972 39 H 0.098 0.902 40 H 0.393 0.607 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.601 -3.441 -3.188 15.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.388 4.388 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.726 3.274 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.212 1.212 15 C 0.032 3.968 16 C 0.022 3.978 17 H 0.098 0.902 18 N -0.335 5.335 19 C 0.366 3.634 20 O -0.391 6.391 21 C -0.200 4.200 22 C -0.083 4.083 23 O 0.056 5.944 24 N 0.002 4.998 25 C -0.204 4.204 26 C 0.501 3.499 27 F -0.148 7.148 28 F -0.152 7.152 29 F -0.113 7.113 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.116 0.884 40 H 0.228 0.772 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -14.583 -4.181 -1.694 15.265 hybrid contribution 0.801 -0.298 -0.257 0.892 sum -13.782 -4.479 -1.951 14.623 Atomic orbital electron populations 1.21857 0.95909 1.01280 1.01171 1.21329 0.94625 1.00074 0.95324 0.90150 1.22082 0.99331 0.99204 0.96153 1.20937 0.90607 0.96651 0.90321 1.43972 1.48348 1.39541 0.99070 1.19003 1.10081 1.03070 1.06665 0.91898 1.25014 0.97054 0.97076 0.99850 1.69965 1.37061 1.28911 1.17857 0.86487 0.79493 0.84031 0.77431 1.20882 1.21522 1.21203 1.21221 0.86398 0.98043 0.91102 1.21902 0.99194 0.79414 0.97300 0.90164 1.45604 1.66291 1.14418 1.07174 1.16619 0.78701 0.82865 0.85172 1.90882 1.49605 1.68380 1.30191 1.22438 1.08638 0.98382 0.90550 1.26516 0.97102 0.83595 1.01126 1.84583 1.62307 1.32285 1.15179 1.73685 1.14533 1.20170 0.91397 1.24667 1.07432 0.92072 0.96218 1.16573 0.75487 0.75136 0.82662 1.93235 1.47650 1.87501 1.86429 1.93235 1.91711 1.48055 1.82186 1.93435 1.58407 1.63665 1.95796 0.92981 0.93025 0.93174 0.92908 0.92645 0.92787 0.96391 0.93412 0.95410 0.88376 0.77185 0.74540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 37.16 0.34 -1.25 16 2 C -0.09 -1.30 2.48 -90.58 -0.22 -1.52 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C -0.13 -1.75 5.20 -26.61 -0.14 -1.89 16 5 C 0.14 2.57 6.52 -3.71 -0.02 2.54 16 6 N -0.59 -13.18 2.91 -172.32 -0.50 -13.69 16 7 C -0.26 -6.61 9.58 -15.06 -0.14 -6.76 16 8 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 9 C 0.01 0.27 4.92 -17.43 -0.09 0.18 16 10 N -0.89 -25.73 11.20 55.49 0.62 -25.11 16 11 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.16 3.56 4.91 -3.71 -0.02 3.54 16 16 C 0.13 2.17 2.24 -67.81 -0.15 2.02 16 17 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 18 N -0.68 -10.65 4.25 -54.77 -0.23 -10.88 16 19 C 0.58 10.21 7.77 -12.54 -0.10 10.11 16 20 O -0.51 -10.91 13.74 5.27 0.07 -10.84 16 21 C -0.19 -2.83 6.41 -102.89 -0.66 -3.49 16 22 C 0.00 -0.03 11.85 30.41 0.36 0.34 16 23 O 0.13 1.46 11.06 18.65 0.21 1.67 16 24 N -0.30 -4.27 11.98 34.78 0.42 -3.85 16 25 C -0.04 -0.64 6.86 -79.76 -0.55 -1.19 16 26 C 0.56 9.17 3.49 36.01 0.13 9.30 16 27 F -0.17 -2.61 17.30 2.25 0.04 -2.57 16 28 F -0.17 -2.70 17.28 2.25 0.04 -2.66 16 29 F -0.13 -2.53 14.27 2.25 0.03 -2.50 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 33 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 2.64 6.06 -51.93 -0.31 2.32 16 40 H 0.39 5.01 5.82 -40.82 -0.24 4.77 16 41 H 0.24 1.22 7.68 -52.49 -0.40 0.81 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -31.83 350.23 -4.90 -36.73 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.57 Total: -0.19 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -1.27 Total: 11.93 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.30 Total: -53.53 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.28 Total: -9.17 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.11 Total: -7.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.83 -4.90 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967397382.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.472 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds