Wall clock time and date at job start Wed Apr 1 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.44684 * 2 1 4 4 C 1.53045 * 109.46112 * 119.96225 * 2 1 3 5 5 C 1.53190 * 109.30951 * 181.38477 * 4 2 1 6 6 N 1.46921 * 108.78136 * 305.36528 * 5 4 2 7 7 C 1.36936 * 120.63719 * 233.63358 * 6 5 4 8 8 H 1.08003 * 119.99689 * 27.66198 * 7 6 5 9 9 C 1.38811 * 120.00374 * 207.66668 * 7 6 5 10 10 N 1.31617 * 120.00017 * 17.34833 * 9 7 6 11 11 Si 1.86799 * 119.99847 * 197.35060 * 9 7 6 12 12 H 1.48502 * 109.47257 * 60.00092 * 11 9 7 13 13 H 1.48501 * 109.46852 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47207 * 299.99812 * 11 9 7 15 15 C 1.47000 * 118.75312 * 53.61154 * 6 5 4 16 16 C 1.53040 * 109.46093 * 240.03475 * 2 1 3 17 17 H 1.09000 * 109.49702 * 58.62861 * 16 2 1 18 18 N 1.46503 * 109.49671 * 298.56245 * 16 2 1 19 19 C 1.34775 * 120.00101 * 155.06420 * 18 16 2 20 20 O 1.21613 * 119.99649 * 359.97438 * 19 18 16 21 21 C 1.47391 * 120.00061 * 180.02562 * 19 18 16 22 22 C 1.37357 * 128.56878 * 359.96932 * 21 19 18 23 23 O 1.33492 * 106.34538 * 180.02562 * 22 21 19 24 24 N 1.20651 * 113.15496 * 0.02562 * 23 22 21 25 25 C 1.30013 * 112.30580 * 0.02562 * 24 23 22 26 26 C 1.50698 * 127.33674 * 180.02562 * 25 24 23 27 27 F 1.39908 * 109.47297 * 269.97270 * 26 25 24 28 28 F 1.39894 * 109.47251 * 29.97338 * 26 25 24 29 29 F 1.39906 * 109.47139 * 149.97919 * 26 25 24 30 30 H 1.08998 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47117 * 299.96513 * 1 2 3 32 32 H 1.08994 * 109.47069 * 59.96492 * 1 2 3 33 33 H 1.08997 * 109.49945 * 301.33856 * 4 2 1 34 34 H 1.08998 * 109.49469 * 61.43416 * 4 2 1 35 35 H 1.09000 * 109.59054 * 65.16303 * 5 4 2 36 36 H 1.09005 * 109.58548 * 185.43718 * 5 4 2 37 37 H 0.96999 * 120.00010 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.63121 * 186.62082 * 15 6 5 39 39 H 1.08999 * 109.57793 * 66.16890 * 15 6 5 40 40 H 0.96995 * 119.99854 * 335.06759 * 18 16 2 41 41 H 1.08004 * 126.82422 * 0.05156 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0001 7 6 4.9758 -2.2739 0.0000 8 1 5.0087 -2.9661 0.8283 9 6 5.8540 -2.4233 -1.0646 10 7 6.0602 -1.4216 -1.8932 11 14 6.7431 -4.0459 -1.3212 12 1 5.7477 -5.1294 -1.5226 13 1 7.6163 -3.9479 -2.5184 14 1 7.5717 -4.3506 -0.1272 15 6 3.5714 -0.6885 -1.2651 16 6 2.0399 -0.7207 -1.2501 17 1 1.6567 -0.2210 -2.1398 18 7 1.5802 -2.1117 -1.2342 19 6 1.4529 -2.7926 -2.3903 20 8 1.7192 -2.2521 -3.4467 21 6 0.9899 -4.1918 -2.3744 22 6 0.6438 -4.9670 -1.2947 23 8 0.2924 -6.1581 -1.7845 24 7 0.3737 -6.2193 -2.9868 25 6 0.7864 -5.1034 -3.5109 26 6 1.0072 -4.8064 -4.9718 27 9 2.3242 -5.1264 -5.3189 28 9 0.1233 -5.5700 -5.7417 29 9 0.7792 -3.4469 -5.2109 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5143 -0.8896 33 1 1.6573 -0.2206 2.1399 34 1 1.6978 -1.7555 1.2384 35 1 3.9144 0.3410 1.3674 36 1 3.9417 -1.2823 2.0999 37 1 6.6736 -1.5261 -2.6373 38 1 3.9413 -1.2843 -2.0995 39 1 3.9143 0.3410 -1.3681 40 1 1.3675 -2.5425 -0.3917 41 1 0.6536 -4.6716 -0.2559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967397383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:19:27 Heat of formation + Delta-G solvation = -96.045772 kcal Electronic energy + Delta-G solvation = -32805.620838 eV Core-core repulsion = 27889.086271 eV Total energy + Delta-G solvation = -4916.534567 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.08977 -47.67428 -47.49568 -45.43471 -39.73442 -37.66002 -34.42680 -34.25686 -33.22285 -32.23795 -31.07929 -29.31619 -27.53768 -27.18597 -24.99778 -24.03918 -22.34010 -22.07823 -21.18869 -20.85541 -19.25042 -18.73271 -18.67667 -18.26331 -17.90671 -17.81129 -16.78160 -16.12950 -15.41873 -15.02721 -14.75165 -14.47697 -14.36676 -14.23907 -14.06070 -13.97133 -13.82389 -13.66882 -13.65327 -13.46605 -13.31724 -13.03493 -12.69661 -12.46742 -12.18505 -11.98288 -11.68007 -11.50539 -11.21350 -10.97696 -10.92352 -10.76311 -10.60309 -10.30617 -10.04325 -10.00819 -9.86390 -9.68859 -9.56987 -8.55911 -8.50430 -6.71844 -5.82159 -3.25361 0.84210 1.05909 2.20407 2.59531 3.28591 3.29035 3.34775 3.41359 3.44162 3.45200 3.66324 4.31426 4.37042 4.45647 4.51306 4.66745 5.00396 5.08120 5.13842 5.23219 5.26741 5.36257 5.47671 5.76944 5.82920 5.90377 6.05642 6.18557 6.26342 6.34213 6.43016 6.52926 6.66015 6.76317 6.87104 7.25645 7.56340 7.60437 7.74282 7.84892 8.40680 8.49751 9.15833 9.80093 10.35325 11.25707 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009787 B = 0.005224 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.135954 B = 5359.063312 C = 6659.909737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.064 0.936 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.285 1.285 13 H -0.289 1.289 14 H -0.283 1.283 15 C 0.159 3.841 16 C 0.127 3.873 17 H 0.081 0.919 18 N -0.685 5.685 19 C 0.583 3.417 20 O -0.514 6.514 21 C -0.192 4.192 22 C -0.002 4.002 23 O 0.129 5.871 24 N -0.301 5.301 25 C -0.041 4.041 26 C 0.558 3.442 27 F -0.162 7.162 28 F -0.172 7.172 29 F -0.137 7.137 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.054 0.946 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.393 0.607 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.725 -3.399 3.195 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.212 1.212 13 H -0.215 1.215 14 H -0.209 1.209 15 C 0.032 3.968 16 C 0.022 3.978 17 H 0.099 0.901 18 N -0.335 5.335 19 C 0.366 3.634 20 O -0.390 6.390 21 C -0.200 4.200 22 C -0.083 4.083 23 O 0.057 5.943 24 N 0.002 4.998 25 C -0.204 4.204 26 C 0.502 3.498 27 F -0.143 7.143 28 F -0.153 7.153 29 F -0.117 7.117 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.046 0.954 40 H 0.228 0.772 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -14.714 -4.139 1.700 15.379 hybrid contribution 0.829 -0.308 0.257 0.921 sum -13.884 -4.447 1.957 14.710 Atomic orbital electron populations 1.21856 0.95902 1.01285 1.01166 1.21329 0.94635 1.00064 0.95314 0.90155 1.22083 0.99322 0.99210 0.96158 1.20933 0.90616 0.96654 0.90298 1.43993 1.48334 1.39569 0.99076 1.19007 1.10351 1.03222 1.06222 0.91867 1.24998 0.97094 0.97099 0.99832 1.69971 1.37275 1.28955 1.17621 0.86493 0.79457 0.84112 0.77434 1.21186 1.21516 1.20876 1.21242 0.86418 0.98043 0.91091 1.21900 0.99166 0.79427 0.97316 0.90145 1.45606 1.66364 1.14367 1.07158 1.16621 0.78746 0.82829 0.85165 1.90885 1.49544 1.68425 1.30180 1.22438 1.08707 0.98343 0.90531 1.26518 0.97107 0.83586 1.01120 1.84582 1.62213 1.32384 1.15171 1.73679 1.14564 1.20142 0.91404 1.24662 1.07438 0.92044 0.96240 1.16558 0.74736 0.75813 0.82682 1.93281 1.35767 1.92590 1.92680 1.93224 1.68902 1.76025 1.77165 1.93388 1.94059 1.29760 1.94539 0.93167 0.93033 0.92976 0.92641 0.92904 0.96395 0.92773 0.93412 0.88358 0.95404 0.77184 0.74534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 37.16 0.34 -1.25 16 2 C -0.09 -1.29 2.48 -90.58 -0.22 -1.52 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C -0.13 -1.75 5.20 -26.61 -0.14 -1.89 16 5 C 0.14 2.57 6.51 -3.71 -0.02 2.54 16 6 N -0.59 -13.20 2.91 -172.26 -0.50 -13.70 16 7 C -0.26 -6.61 9.59 -15.06 -0.14 -6.76 16 8 H 0.06 1.58 7.89 -52.48 -0.41 1.17 16 9 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 10 N -0.89 -25.78 11.19 55.49 0.62 -25.16 16 11 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.16 3.56 4.91 -3.67 -0.02 3.54 16 16 C 0.13 2.18 2.24 -67.81 -0.15 2.02 16 17 H 0.08 1.44 7.58 -51.93 -0.39 1.05 16 18 N -0.68 -10.66 4.25 -54.77 -0.23 -10.90 16 19 C 0.58 10.22 7.77 -12.54 -0.10 10.13 16 20 O -0.51 -10.93 13.74 5.27 0.07 -10.86 16 21 C -0.19 -2.84 6.41 -102.90 -0.66 -3.50 16 22 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 23 O 0.13 1.47 11.06 18.66 0.21 1.67 16 24 N -0.30 -4.27 11.98 34.78 0.42 -3.85 16 25 C -0.04 -0.64 6.86 -79.77 -0.55 -1.19 16 26 C 0.56 9.19 3.49 36.00 0.13 9.32 16 27 F -0.16 -2.88 17.30 2.25 0.04 -2.84 16 28 F -0.17 -2.58 17.28 2.25 0.04 -2.54 16 29 F -0.14 -2.42 14.27 2.25 0.03 -2.39 16 30 H 0.05 0.51 7.54 -51.93 -0.39 0.12 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.97 7.94 -51.93 -0.41 0.56 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.10 2.65 6.04 -51.93 -0.31 2.33 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 5.02 5.82 -40.82 -0.24 4.78 16 41 H 0.24 1.22 7.68 -52.48 -0.40 0.82 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -31.91 350.22 -4.90 -36.80 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.57 Total: -0.19 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.27 Total: 11.96 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.30 Total: -53.61 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.28 Total: -9.18 kcal Atomic # 9 Polarization: -7.88 SS G_CDS: 0.11 Total: -7.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.91 -4.90 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967397383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.241 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds