Wall clock time and date at job start Wed Apr 1 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.45304 * 2 1 4 4 C 1.53045 * 109.45970 * 240.03331 * 2 1 3 5 5 C 1.53190 * 109.31377 * 178.61216 * 4 2 1 6 6 N 1.46935 * 108.77177 * 54.64103 * 5 4 2 7 7 C 1.36932 * 120.63138 * 126.36838 * 6 5 4 8 8 H 1.08005 * 120.00170 * 332.78300 * 7 6 5 9 9 C 1.38809 * 120.00091 * 153.05720 * 7 6 5 10 10 N 1.31622 * 119.99839 * 159.13375 * 9 7 6 11 11 Si 1.86792 * 120.00094 * 339.13715 * 9 7 6 12 12 H 1.48496 * 109.47335 * 93.09301 * 11 9 7 13 13 H 1.48508 * 109.47292 * 213.09529 * 11 9 7 14 14 H 1.48507 * 109.47235 * 333.09221 * 11 9 7 15 15 C 1.46924 * 118.73885 * 306.63822 * 6 5 4 16 16 C 1.52766 * 109.00532 * 53.31167 * 15 6 5 17 17 H 1.09008 * 109.56313 * 185.55385 * 16 15 6 18 18 N 1.46496 * 109.35969 * 65.49964 * 16 15 6 19 19 C 1.34776 * 120.00146 * 85.16021 * 18 16 15 20 20 O 1.21688 * 120.00105 * 359.97438 * 19 18 16 21 21 C 1.46723 * 120.00314 * 179.97438 * 19 18 16 22 22 O 1.35341 * 126.63835 * 0.02562 * 21 19 18 23 23 C 1.33675 * 107.68155 * 179.97438 * 22 21 19 24 24 N 1.30612 * 109.15231 * 359.97438 * 23 22 21 25 25 C 1.33689 * 108.99928 * 359.76485 * 24 23 22 26 26 C 1.50705 * 126.27840 * 180.25492 * 25 24 23 27 27 F 1.39897 * 109.47047 * 270.13912 * 26 25 24 28 28 F 1.39899 * 109.46703 * 30.14310 * 26 25 24 29 29 F 1.39906 * 109.46880 * 150.13877 * 26 25 24 30 30 H 1.09006 * 109.47344 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47019 * 299.96517 * 1 2 3 32 32 H 1.09000 * 109.47232 * 59.96390 * 1 2 3 33 33 H 1.08999 * 109.49065 * 58.66621 * 4 2 1 34 34 H 1.08999 * 109.49897 * 298.57294 * 4 2 1 35 35 H 1.08990 * 109.59257 * 294.85560 * 5 4 2 36 36 H 1.09000 * 109.58721 * 174.42525 * 5 4 2 37 37 H 0.97004 * 119.99980 * 180.02562 * 10 9 7 38 38 H 1.08993 * 109.58444 * 173.14485 * 15 6 5 39 39 H 1.09001 * 109.58984 * 293.57651 * 15 6 5 40 40 H 0.97006 * 120.00178 * 265.15297 * 18 16 15 41 41 H 1.07997 * 125.41829 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 0.0000 7 6 4.9756 -2.2741 -0.0001 8 1 5.0133 -2.9621 -0.8318 9 6 5.8437 -2.4325 1.0714 10 7 6.4151 -3.5982 1.2887 11 14 6.2008 -0.9916 2.2051 12 1 5.2685 -1.0277 3.3604 13 1 7.5999 -1.0819 2.6950 14 1 6.0181 0.2807 1.4612 15 6 3.5672 -0.6925 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2208 2.1399 18 7 1.5801 -2.1117 1.2342 19 6 1.4515 -2.7922 2.3904 20 8 1.7177 -2.2515 3.4475 21 6 0.9905 -4.1851 2.3746 22 8 0.6598 -4.9141 1.2833 23 6 0.2939 -6.1295 1.7025 24 7 0.3859 -6.1794 3.0044 25 6 0.8186 -4.9977 3.4558 26 6 1.0674 -4.6301 4.8960 27 9 -0.1037 -4.1043 5.4520 28 9 1.4509 -5.7711 5.6089 29 9 2.0861 -3.6735 4.9637 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 1.6572 -0.2206 -2.1398 34 1 1.6977 -1.7556 -1.2384 35 1 3.9143 0.3408 -1.3673 36 1 3.9416 -1.2845 -2.0985 37 1 7.0214 -3.7090 2.0377 38 1 3.9347 -1.2910 2.0977 39 1 3.9097 0.3367 1.3716 40 1 1.3681 -2.5430 0.3915 41 1 -0.0259 -6.9411 1.0659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967441018.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:16 Heat of formation + Delta-G solvation = -124.470512 kcal Electronic energy + Delta-G solvation = -33088.426773 eV Core-core repulsion = 28170.659617 eV Total energy + Delta-G solvation = -4917.767156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -49.91969 -47.49832 -47.31828 -43.80918 -39.98279 -37.95790 -35.54126 -34.41771 -33.13934 -31.49729 -31.39644 -29.79707 -27.78010 -26.68522 -24.34697 -23.91526 -23.00504 -22.21330 -21.34655 -21.01437 -19.16088 -19.00067 -18.40580 -18.08472 -17.84079 -17.04894 -16.89909 -16.05961 -15.64726 -15.42458 -14.85229 -14.58253 -14.45085 -14.27658 -14.04521 -14.01039 -13.82261 -13.69744 -13.56159 -13.47402 -13.42633 -13.38444 -12.84830 -12.33474 -12.25174 -12.09148 -11.92723 -11.78308 -11.58689 -11.25908 -11.19888 -10.70415 -10.62099 -10.34222 -10.17677 -9.97930 -9.84607 -9.54466 -9.47202 -8.92299 -8.55395 -7.02729 -5.98709 -3.35192 0.44059 1.96879 2.03373 2.59416 3.01296 3.23478 3.38669 3.48402 3.51042 3.52574 3.87159 4.37157 4.49941 4.52290 4.74370 4.83548 4.87206 4.99064 5.00171 5.09023 5.11881 5.37662 5.60899 5.61995 5.63161 5.74647 5.85887 5.96345 5.97310 6.08290 6.20157 6.24564 6.39386 6.52707 6.57038 6.67321 6.75898 7.02966 7.56424 7.90027 8.16526 8.27706 8.87931 9.68082 10.03642 11.16640 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010770 B = 0.005246 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.152250 B = 5336.466576 C = 6323.169496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.132 4.132 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.264 4.264 8 H 0.084 0.916 9 C 0.029 3.971 10 N -0.904 5.904 11 Si 0.874 3.126 12 H -0.282 1.282 13 H -0.302 1.302 14 H -0.270 1.270 15 C 0.111 3.889 16 C 0.133 3.867 17 H 0.088 0.912 18 N -0.676 5.676 19 C 0.592 3.408 20 O -0.496 6.496 21 C -0.007 4.007 22 O -0.173 6.173 23 C 0.208 3.792 24 N -0.459 5.459 25 C -0.041 4.041 26 C 0.552 3.448 27 F -0.171 7.171 28 F -0.168 7.168 29 F -0.135 7.135 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.037 0.963 40 H 0.405 0.595 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 0.304 -2.073 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.171 4.171 5 C 0.019 3.981 6 N -0.325 5.325 7 C -0.392 4.392 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.546 5.546 11 Si 0.704 3.296 12 H -0.209 1.209 13 H -0.231 1.231 14 H -0.195 1.195 15 C -0.016 4.016 16 C 0.027 3.973 17 H 0.106 0.894 18 N -0.326 5.326 19 C 0.374 3.626 20 O -0.372 6.372 21 C -0.066 4.066 22 O -0.057 6.057 23 C -0.018 4.018 24 N -0.186 5.186 25 C -0.166 4.166 26 C 0.497 3.503 27 F -0.152 7.152 28 F -0.149 7.149 29 F -0.116 7.116 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.241 0.759 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -15.877 0.104 -0.914 15.903 hybrid contribution 0.432 0.745 -0.002 0.861 sum -15.445 0.849 -0.916 15.495 Atomic orbital electron populations 1.21855 0.95362 1.01630 1.01450 1.21331 0.95195 0.99968 0.94828 0.89806 1.22102 0.98935 0.99817 0.96264 1.20967 0.90799 0.96804 0.89496 1.44298 1.48662 1.40479 0.99035 1.18809 1.10242 1.02934 1.07224 0.89810 1.25241 0.97287 0.96522 0.98047 1.69820 1.32674 1.21787 1.30346 0.87066 0.76662 0.84692 0.81201 1.20902 1.23062 1.19543 1.21737 0.90734 0.97995 0.91088 1.21641 0.97261 0.79967 0.98444 0.89397 1.45703 1.64972 1.14092 1.07852 1.16289 0.79062 0.81614 0.85609 1.91004 1.49977 1.66201 1.30008 1.23319 1.03955 0.95098 0.84183 1.84610 1.62292 1.23739 1.35069 1.28408 0.96602 0.86223 0.90542 1.70121 1.16982 1.21152 1.10341 1.21627 1.07981 0.92035 0.94940 1.16731 0.75354 0.75261 0.82994 1.93212 1.48606 1.86859 1.86554 1.93219 1.91134 1.50720 1.79877 1.93444 1.58892 1.63020 1.96231 0.92941 0.92808 0.92653 0.92028 0.92338 0.95748 0.91735 0.92718 0.89949 0.94535 0.75876 0.71747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.05 37.16 0.34 -1.20 16 2 C -0.09 -1.22 2.48 -90.58 -0.22 -1.45 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -1.76 5.20 -26.61 -0.14 -1.90 16 5 C 0.15 2.52 6.52 -3.71 -0.02 2.50 16 6 N -0.60 -13.19 2.70 -172.58 -0.47 -13.66 16 7 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 8 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 9 C 0.03 0.82 5.23 -17.43 -0.09 0.73 16 10 N -0.90 -27.63 13.97 55.49 0.78 -26.86 16 11 Si 0.87 22.68 24.35 -169.99 -4.14 18.54 16 12 H -0.28 -7.39 6.62 56.52 0.37 -7.02 16 13 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 14 H -0.27 -6.75 6.64 56.52 0.38 -6.37 16 15 C 0.11 2.34 3.76 -3.93 -0.01 2.32 16 16 C 0.13 2.19 2.23 -68.03 -0.15 2.04 16 17 H 0.09 1.44 7.58 -51.92 -0.39 1.04 16 18 N -0.68 -11.09 4.24 -55.19 -0.23 -11.33 16 19 C 0.59 10.79 7.70 -12.83 -0.10 10.69 16 20 O -0.50 -10.31 12.80 5.20 0.07 -10.24 16 21 C -0.01 -0.11 7.14 -36.84 -0.26 -0.37 16 22 O -0.17 -2.25 10.57 4.40 0.05 -2.21 16 23 C 0.21 2.18 13.21 52.24 0.69 2.87 16 24 N -0.46 -6.59 11.21 -10.88 -0.12 -6.71 16 25 C -0.04 -0.68 6.49 -82.46 -0.54 -1.22 16 26 C 0.55 9.57 3.34 36.01 0.12 9.69 16 27 F -0.17 -2.78 17.30 2.25 0.04 -2.74 16 28 F -0.17 -2.84 17.27 2.25 0.04 -2.80 16 29 F -0.13 -2.68 13.48 2.25 0.03 -2.65 16 30 H 0.05 0.55 7.55 -51.93 -0.39 0.16 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.08 2.05 4.49 -51.93 -0.23 1.82 16 39 H 0.04 0.76 7.08 -51.93 -0.37 0.39 16 40 H 0.40 6.01 6.44 -40.82 -0.26 5.74 16 41 H 0.27 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -33.64 343.24 -3.88 -37.52 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.54 Total: 0.45 kcal Atomic # 6 Polarization: 18.06 SS G_CDS: -0.55 Total: 17.51 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.05 Total: -58.55 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.11 Total: -12.45 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.64 -3.88 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967441018.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.946 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds