Wall clock time and date at job start Wed Apr 1 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46148 * 2 1 4 4 C 1.53073 * 109.45398 * 119.81410 * 2 1 3 5 5 C 1.53198 * 109.29489 * 181.23972 * 4 2 1 6 6 N 1.46922 * 108.89220 * 305.58040 * 5 4 2 7 7 C 1.36938 * 120.62657 * 233.55496 * 6 5 4 8 8 H 1.07993 * 120.00147 * 27.68222 * 7 6 5 9 9 C 1.38816 * 119.99905 * 207.68234 * 7 6 5 10 10 N 1.31620 * 119.99978 * 17.35011 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 197.35375 * 9 7 6 12 12 H 1.48502 * 109.47014 * 59.99798 * 11 9 7 13 13 H 1.48494 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47070 * 300.00230 * 11 9 7 15 15 C 1.46926 * 118.74192 * 53.54358 * 6 5 4 16 16 C 1.53043 * 109.45907 * 240.02710 * 2 1 3 17 17 H 1.09000 * 109.49915 * 58.66720 * 16 2 1 18 18 N 1.46491 * 109.52543 * 298.58062 * 16 2 1 19 19 C 1.34776 * 120.00463 * 155.14453 * 18 16 2 20 20 O 1.21691 * 119.99506 * 0.02562 * 19 18 16 21 21 C 1.46720 * 120.00655 * 180.02562 * 19 18 16 22 22 O 1.35346 * 126.64288 * 0.02562 * 21 19 18 23 23 C 1.33661 * 107.68675 * 179.97438 * 22 21 19 24 24 N 1.30612 * 109.15255 * 0.02562 * 23 22 21 25 25 C 1.33699 * 108.99862 * 359.76105 * 24 23 22 26 26 C 1.50695 * 126.27603 * 180.25886 * 25 24 23 27 27 F 1.39906 * 109.47175 * 270.14100 * 26 25 24 28 28 F 1.39905 * 109.47313 * 30.13680 * 26 25 24 29 29 F 1.39904 * 109.47203 * 150.13782 * 26 25 24 30 30 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47384 * 299.97275 * 1 2 3 32 32 H 1.09003 * 109.47235 * 59.97345 * 1 2 3 33 33 H 1.09006 * 109.38523 * 61.37252 * 4 2 1 34 34 H 1.08994 * 109.62283 * 301.26362 * 4 2 1 35 35 H 1.09000 * 109.58634 * 185.72091 * 5 4 2 36 36 H 1.08999 * 109.58492 * 65.44498 * 5 4 2 37 37 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.58874 * 66.16922 * 15 6 5 39 39 H 1.08996 * 109.58552 * 186.60555 * 15 6 5 40 40 H 0.97001 * 120.00132 * 335.14668 * 18 16 2 41 41 H 1.07996 * 125.42370 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7176 1.2523 5 6 3.5714 -0.6884 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0003 8 1 5.0084 -2.9662 0.8285 9 6 5.8541 -2.4234 -1.0642 10 7 6.0603 -1.4217 -1.8928 11 14 6.7433 -4.0460 -1.3208 12 1 5.7479 -5.1295 -1.5223 13 1 7.6166 -3.9480 -2.5178 14 1 7.5717 -4.3507 -0.1267 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7209 -1.2500 17 1 1.6572 -0.2210 -2.1398 18 7 1.5801 -2.1118 -1.2348 19 6 1.4546 -2.7928 -2.3911 20 8 1.7236 -2.2524 -3.4477 21 6 0.9937 -4.1856 -2.3759 22 8 0.6592 -4.9140 -1.2853 23 6 0.2938 -6.1292 -1.7050 24 7 0.3896 -6.1798 -3.0067 25 6 0.8146 -4.9953 -3.4581 26 6 1.0542 -4.6240 -4.8989 27 9 2.3771 -4.9215 -5.2434 28 9 0.1842 -5.3508 -5.7187 29 9 0.8237 -3.2550 -5.0722 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3634 0.5143 -0.8898 33 1 1.6957 -1.7519 1.2419 34 1 1.6593 -0.2160 2.1420 35 1 3.9417 -1.2842 2.0985 36 1 3.9164 0.3403 1.3685 37 1 6.6739 -1.5262 -2.6369 38 1 3.9143 0.3408 -1.3674 39 1 3.9416 -1.2848 -2.0983 40 1 1.3660 -2.5426 -0.3926 41 1 -0.0285 -6.9404 -1.0691 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967441019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:24 Heat of formation + Delta-G solvation = -130.405850 kcal Electronic energy + Delta-G solvation = -33010.089968 eV Core-core repulsion = 28092.065436 eV Total energy + Delta-G solvation = -4918.024531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.91985 -47.47984 -47.34422 -43.83034 -39.77415 -37.73217 -35.55397 -34.25412 -33.02897 -31.44564 -31.06579 -29.34563 -27.50190 -26.65018 -24.39578 -23.94155 -22.68435 -22.03319 -21.20708 -20.93993 -19.13178 -18.79885 -18.38351 -18.10460 -17.80980 -17.05377 -16.80023 -16.06101 -15.47262 -15.06126 -14.65627 -14.55549 -14.34620 -14.10777 -14.06103 -13.89886 -13.78833 -13.74089 -13.51085 -13.44613 -13.35779 -13.04377 -12.69152 -12.34289 -12.05747 -11.95472 -11.67908 -11.52743 -11.26300 -11.20056 -10.97557 -10.76289 -10.59902 -10.30106 -10.07132 -9.95700 -9.74783 -9.61106 -9.53094 -8.63591 -8.51166 -6.72410 -5.82539 -3.25458 0.44138 1.94056 2.02787 2.59546 3.09400 3.31408 3.35548 3.41954 3.44180 3.51043 3.86138 4.38931 4.45791 4.50151 4.75159 4.98257 5.07398 5.11660 5.13695 5.24511 5.35007 5.47485 5.58431 5.77147 5.82873 5.90131 6.05960 6.16189 6.24641 6.32765 6.40702 6.49155 6.65361 6.72151 6.86286 7.00823 7.21089 7.54096 7.71123 7.76713 8.28170 8.40623 9.15596 9.79497 10.34661 11.25420 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009774 B = 0.005424 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.050674 B = 5160.565006 C = 6447.290995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.082 0.918 4 C -0.130 4.130 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.286 1.286 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.158 3.842 16 C 0.123 3.877 17 H 0.084 0.916 18 N -0.673 5.673 19 C 0.588 3.412 20 O -0.492 6.492 21 C -0.005 4.005 22 O -0.174 6.174 23 C 0.204 3.796 24 N -0.459 5.459 25 C -0.046 4.046 26 C 0.553 3.447 27 F -0.165 7.165 28 F -0.171 7.171 29 F -0.138 7.138 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.256 0.744 38 H 0.031 0.969 39 H 0.099 0.901 40 H 0.401 0.599 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -4.121 2.704 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.212 1.212 13 H -0.214 1.214 14 H -0.208 1.208 15 C 0.032 3.968 16 C 0.018 3.982 17 H 0.102 0.898 18 N -0.323 5.323 19 C 0.369 3.631 20 O -0.368 6.368 21 C -0.064 4.064 22 O -0.059 6.059 23 C -0.022 4.022 24 N -0.186 5.186 25 C -0.170 4.170 26 C 0.497 3.503 27 F -0.146 7.146 28 F -0.152 7.152 29 F -0.119 7.119 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.117 0.883 40 H 0.237 0.763 41 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -14.700 -4.191 1.476 15.357 hybrid contribution 0.620 -0.807 0.574 1.168 sum -14.080 -4.997 2.051 15.081 Atomic orbital electron populations 1.21868 0.95865 1.01341 1.01240 1.21329 0.94684 1.00082 0.95186 0.89978 1.22101 0.99318 0.99376 0.96140 1.20936 0.90599 0.96666 0.90267 1.43976 1.48300 1.39590 0.99105 1.19022 1.10248 1.03204 1.06278 0.91872 1.25004 0.97110 0.97165 0.99817 1.69972 1.37316 1.28924 1.17647 0.86481 0.79433 0.84069 0.77462 1.21228 1.21424 1.20843 1.21240 0.86151 0.98239 0.91206 1.22020 0.99473 0.79071 0.97632 0.89849 1.45753 1.64573 1.14477 1.07486 1.16292 0.79639 0.81360 0.85811 1.91015 1.49767 1.66111 1.29906 1.23537 1.03487 0.95305 0.84054 1.84612 1.62235 1.23781 1.35231 1.28392 0.97005 0.86238 0.90576 1.70119 1.16975 1.21174 1.10327 1.21644 1.08282 0.92097 0.95000 1.16712 0.74714 0.75861 0.82987 1.93263 1.35446 1.93110 1.92803 1.93207 1.69686 1.77928 1.74422 1.93400 1.94074 1.28959 1.95497 0.93184 0.92927 0.92904 0.92827 0.92515 0.92752 0.96292 0.93380 0.95101 0.88323 0.76296 0.71821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.05 37.15 0.34 -1.36 16 2 C -0.09 -1.34 2.47 -90.56 -0.22 -1.56 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.89 5.21 -26.59 -0.14 -2.03 16 5 C 0.14 2.66 6.51 -3.71 -0.02 2.64 16 6 N -0.59 -13.55 2.91 -172.32 -0.50 -14.05 16 7 C -0.26 -6.76 9.59 -15.06 -0.14 -6.90 16 8 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -25.88 11.19 55.49 0.62 -25.26 16 11 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.16 3.59 4.91 -3.71 -0.02 3.57 16 16 C 0.12 2.16 2.24 -67.81 -0.15 2.01 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.67 -11.34 4.25 -54.98 -0.23 -11.58 16 19 C 0.59 10.78 7.70 -12.84 -0.10 10.68 16 20 O -0.49 -10.36 12.80 5.20 0.07 -10.29 16 21 C 0.00 -0.08 7.14 -36.84 -0.26 -0.34 16 22 O -0.17 -2.22 10.57 4.43 0.05 -2.17 16 23 C 0.20 2.07 13.21 52.24 0.69 2.76 16 24 N -0.46 -6.46 11.21 -10.89 -0.12 -6.58 16 25 C -0.05 -0.75 6.49 -82.47 -0.54 -1.28 16 26 C 0.55 9.48 3.34 36.00 0.12 9.60 16 27 F -0.17 -3.06 17.30 2.25 0.04 -3.02 16 28 F -0.17 -2.70 17.27 2.25 0.04 -2.66 16 29 F -0.14 -2.51 13.47 2.25 0.03 -2.48 16 30 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.77 6.42 -51.93 -0.33 0.44 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 2.66 6.04 -51.93 -0.31 2.35 16 40 H 0.40 6.11 6.45 -40.82 -0.26 5.85 16 41 H 0.27 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.99 349.72 -4.93 -36.91 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.62 Total: 1.00 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: -0.54 Total: 17.94 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.24 Total: -57.47 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.11 Total: -12.46 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.11 Total: -8.16 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.99 -4.93 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967441019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.491 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds