Wall clock time and date at job start Wed Apr 1 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44868 * 2 1 4 4 C 1.53046 * 109.46087 * 119.96271 * 2 1 3 5 5 C 1.53190 * 109.31425 * 181.38635 * 4 2 1 6 6 N 1.46932 * 108.77132 * 305.36320 * 5 4 2 7 7 C 1.36933 * 120.62937 * 233.62532 * 6 5 4 8 8 H 1.08001 * 120.00091 * 27.68382 * 7 6 5 9 9 C 1.38810 * 120.00125 * 207.67878 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.35492 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.35589 * 9 7 6 12 12 H 1.48494 * 109.47077 * 90.00177 * 11 9 7 13 13 H 1.48503 * 109.47121 * 210.00320 * 11 9 7 14 14 H 1.48499 * 109.47050 * 330.00244 * 11 9 7 15 15 C 1.46921 * 118.73909 * 53.61386 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03091 * 2 1 3 17 17 H 1.09003 * 109.52415 * 298.58026 * 16 2 1 18 18 N 1.46497 * 109.49476 * 58.66302 * 16 2 1 19 19 C 1.34776 * 119.99937 * 204.83573 * 18 16 2 20 20 O 1.21691 * 119.99683 * 0.02562 * 19 18 16 21 21 C 1.46720 * 120.00506 * 180.02562 * 19 18 16 22 22 O 1.35344 * 126.63913 * 0.03007 * 21 19 18 23 23 C 1.33661 * 107.68261 * 179.97438 * 22 21 19 24 24 N 1.30617 * 109.15627 * 359.97438 * 23 22 21 25 25 C 1.33689 * 108.99341 * 359.76390 * 24 23 22 26 26 C 1.50698 * 126.27473 * 180.25970 * 25 24 23 27 27 F 1.39903 * 109.47386 * 270.14170 * 26 25 24 28 28 F 1.39904 * 109.47092 * 30.13861 * 26 25 24 29 29 F 1.39897 * 109.47536 * 150.14133 * 26 25 24 30 30 H 1.09002 * 109.47277 * 300.03427 * 1 2 3 31 31 H 1.08997 * 109.46885 * 60.03356 * 1 2 3 32 32 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49741 * 61.43316 * 4 2 1 34 34 H 1.09000 * 109.49566 * 301.33959 * 4 2 1 35 35 H 1.08997 * 109.58631 * 65.14746 * 5 4 2 36 36 H 1.08997 * 109.58980 * 185.44103 * 5 4 2 37 37 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59084 * 66.17302 * 15 6 5 39 39 H 1.09004 * 109.58792 * 186.60074 * 15 6 5 40 40 H 0.96995 * 120.00584 * 24.84203 * 18 16 2 41 41 H 1.08004 * 125.42277 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0001 8 1 5.0084 -2.9663 0.8284 9 6 5.8540 -2.4233 -1.0643 10 7 6.0603 -1.4217 -1.8928 11 14 6.7432 -4.0460 -1.3211 12 1 5.9258 -4.9255 -2.1949 13 1 8.0580 -3.7937 -1.9636 14 1 6.9526 -4.7087 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6978 -1.7557 -1.2388 18 7 1.5255 -0.0488 -2.4459 19 6 1.4001 -0.7315 -3.6012 20 8 1.7137 -1.9063 -3.6507 21 6 0.8856 -0.0584 -4.7990 22 8 0.4996 1.2352 -4.8956 23 6 0.0978 1.4462 -6.1529 24 7 0.2206 0.3383 -6.8337 25 6 0.7099 -0.6131 -6.0320 26 6 1.0091 -2.0384 -6.4193 27 9 -0.1265 -2.8276 -6.2070 28 9 1.3662 -2.0892 -7.7710 29 9 2.0652 -2.5218 -5.6394 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6572 -0.2206 2.1399 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2824 2.1000 37 1 6.6743 -1.5259 -2.6365 38 1 3.9143 0.3408 -1.3673 39 1 3.9417 -1.2847 -2.0984 40 1 1.2753 0.8875 -2.4063 41 1 -0.2691 2.3838 -6.5438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967441020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:34 Heat of formation + Delta-G solvation = -131.300103 kcal Electronic energy + Delta-G solvation = -32316.925639 eV Core-core repulsion = 27398.862329 eV Total energy + Delta-G solvation = -4918.063309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.99279 -47.57178 -47.39196 -43.98693 -39.77436 -37.76076 -35.72506 -34.48613 -33.28427 -31.57934 -31.01559 -29.11787 -27.51344 -26.72454 -24.45050 -24.01858 -22.84616 -21.96765 -21.14927 -20.61148 -19.75428 -18.94076 -18.48858 -18.13721 -17.72086 -17.21875 -16.87202 -16.17810 -15.87781 -15.00384 -14.75110 -14.58198 -14.34951 -14.25601 -14.09200 -13.89702 -13.80787 -13.65514 -13.56631 -13.49714 -13.42687 -13.12286 -12.50407 -12.42715 -12.11849 -12.10026 -11.75846 -11.66980 -11.35677 -10.93158 -10.80642 -10.73086 -10.52146 -10.29135 -10.16727 -9.98526 -9.79513 -9.70182 -9.58128 -8.78850 -8.46210 -6.71514 -5.79246 -3.22530 0.27927 1.80149 1.86852 2.47764 2.94965 3.09514 3.41604 3.43343 3.49762 3.51418 3.76073 4.23435 4.40866 4.52180 4.63531 4.82498 4.94008 5.06173 5.16241 5.31074 5.42728 5.45450 5.52895 5.80813 5.90127 5.93541 6.01380 6.14617 6.27250 6.35301 6.39073 6.57980 6.63964 6.74609 6.85765 6.90640 7.16145 7.53706 7.63360 7.80940 8.11411 8.43793 9.18815 9.82698 10.36750 11.28956 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.004438 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.245744 B = 6307.051932 C = 8081.713030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.125 4.125 5 C 0.141 3.859 6 N -0.586 5.586 7 C -0.259 4.259 8 H 0.068 0.932 9 C 0.009 3.991 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.165 3.835 16 C 0.121 3.879 17 H 0.089 0.911 18 N -0.695 5.695 19 C 0.585 3.415 20 O -0.476 6.476 21 C -0.011 4.011 22 O -0.176 6.176 23 C 0.206 3.794 24 N -0.459 5.459 25 C -0.040 4.040 26 C 0.551 3.449 27 F -0.169 7.169 28 F -0.169 7.169 29 F -0.133 7.133 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.019 0.981 36 H 0.057 0.943 37 H 0.254 0.746 38 H 0.019 0.981 39 H 0.097 0.903 40 H 0.398 0.602 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 8.686 -5.067 18.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.038 3.962 16 C 0.017 3.983 17 H 0.107 0.893 18 N -0.345 5.345 19 C 0.366 3.634 20 O -0.350 6.350 21 C -0.070 4.070 22 O -0.061 6.061 23 C -0.020 4.020 24 N -0.185 5.185 25 C -0.165 4.165 26 C 0.495 3.505 27 F -0.151 7.151 28 F -0.150 7.150 29 F -0.114 7.114 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.116 0.884 40 H 0.233 0.767 41 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -14.784 7.750 -5.799 17.671 hybrid contribution 0.429 -0.089 0.137 0.459 sum -14.355 7.661 -5.662 17.228 Atomic orbital electron populations 1.21870 0.95889 1.01719 1.00829 1.21315 0.94649 0.99787 0.95358 0.91280 1.22078 0.98979 1.00120 0.95306 1.20973 0.90754 0.96564 0.90190 1.43939 1.48053 1.39855 0.99042 1.19155 1.09854 1.03269 1.06529 0.91466 1.25026 0.97068 0.97411 0.99570 1.69997 1.37478 1.29047 1.17719 0.86309 0.78732 0.83786 0.78062 1.21100 1.21750 1.20391 1.21125 0.85933 0.97761 0.91424 1.22257 0.98843 0.96560 0.80670 0.89280 1.45991 1.64191 1.14313 1.09957 1.16361 0.79731 0.86297 0.80984 1.91087 1.48105 1.13728 1.82100 1.23549 1.03587 0.82029 0.97855 1.84600 1.61022 1.26880 1.33622 1.28440 0.96746 0.99743 0.77085 1.70148 1.16385 0.99014 1.32962 1.21693 1.07242 0.96412 0.91132 1.16750 0.75730 0.83015 0.74996 1.93227 1.51343 1.75881 1.94599 1.93220 1.91855 1.96717 1.33228 1.93466 1.56037 1.88530 1.73334 0.92902 0.93355 0.92763 0.91950 0.92425 0.96352 0.92466 0.93563 0.96276 0.88441 0.76747 0.71715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.02 37.16 0.34 -1.40 16 2 C -0.09 -1.36 2.27 -90.58 -0.21 -1.56 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16 5 C 0.14 2.79 6.51 -3.71 -0.02 2.77 16 6 N -0.59 -14.33 2.99 -172.32 -0.52 -14.85 16 7 C -0.26 -7.09 9.59 -15.06 -0.14 -7.23 16 8 H 0.07 1.81 7.89 -52.49 -0.41 1.39 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 11 Si 0.90 22.33 29.59 -169.99 -5.03 17.31 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.16 3.83 4.89 -3.71 -0.02 3.81 16 16 C 0.12 2.19 2.06 -67.81 -0.14 2.05 16 17 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 18 N -0.69 -10.58 4.37 -54.98 -0.24 -10.82 16 19 C 0.59 9.91 7.70 -12.84 -0.10 9.82 16 20 O -0.48 -9.93 12.81 5.20 0.07 -9.87 16 21 C -0.01 -0.16 7.14 -36.84 -0.26 -0.42 16 22 O -0.18 -1.81 10.57 4.43 0.05 -1.76 16 23 C 0.21 1.65 13.21 52.25 0.69 2.34 16 24 N -0.46 -5.65 11.21 -10.89 -0.12 -5.78 16 25 C -0.04 -0.59 6.49 -82.47 -0.54 -1.13 16 26 C 0.55 8.91 3.34 36.00 0.12 9.03 16 27 F -0.17 -2.68 17.30 2.25 0.04 -2.65 16 28 F -0.17 -2.63 17.27 2.25 0.04 -2.59 16 29 F -0.13 -2.52 13.48 2.25 0.03 -2.49 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 2.69 6.04 -51.93 -0.31 2.38 16 40 H 0.40 4.80 8.10 -40.82 -0.33 4.47 16 41 H 0.27 0.43 8.06 -52.48 -0.42 0.01 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -33.31 352.84 -5.02 -38.33 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.76 Total: -0.54 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: -0.51 Total: 16.12 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.26 Total: -57.18 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.11 Total: -11.63 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.73 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.31 -5.02 -38.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967441020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.969 kcal (2) G-P(sol) polarization free energy of solvation -33.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds