Wall clock time and date at job start Wed Apr 1 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.44868 * 2 1 4 4 C 1.53046 * 109.46087 * 119.96271 * 2 1 3 5 5 C 1.53190 * 109.31425 * 181.38635 * 4 2 1 6 6 N 1.46932 * 108.77132 * 305.36320 * 5 4 2 7 7 C 1.36933 * 120.62937 * 233.62532 * 6 5 4 8 8 H 1.08001 * 120.00091 * 27.68382 * 7 6 5 9 9 C 1.38810 * 120.00125 * 207.67878 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.35492 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.35589 * 9 7 6 12 12 H 1.48494 * 109.47077 * 90.00177 * 11 9 7 13 13 H 1.48503 * 109.47121 * 210.00320 * 11 9 7 14 14 H 1.48499 * 109.47050 * 330.00244 * 11 9 7 15 15 C 1.46921 * 118.73909 * 53.61386 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03091 * 2 1 3 17 17 H 1.09003 * 109.52415 * 298.58026 * 16 2 1 18 18 N 1.46497 * 109.49476 * 58.66302 * 16 2 1 19 19 C 1.34776 * 119.99937 * 204.83573 * 18 16 2 20 20 O 1.21691 * 119.99683 * 0.02562 * 19 18 16 21 21 C 1.46720 * 120.00506 * 180.02562 * 19 18 16 22 22 O 1.35344 * 126.63913 * 0.03007 * 21 19 18 23 23 C 1.33661 * 107.68261 * 179.97438 * 22 21 19 24 24 N 1.30617 * 109.15627 * 359.97438 * 23 22 21 25 25 C 1.33689 * 108.99341 * 359.76390 * 24 23 22 26 26 C 1.50698 * 126.27473 * 180.25970 * 25 24 23 27 27 F 1.39903 * 109.47386 * 270.14170 * 26 25 24 28 28 F 1.39904 * 109.47092 * 30.13861 * 26 25 24 29 29 F 1.39897 * 109.47536 * 150.14133 * 26 25 24 30 30 H 1.09002 * 109.47277 * 300.03427 * 1 2 3 31 31 H 1.08997 * 109.46885 * 60.03356 * 1 2 3 32 32 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49741 * 61.43316 * 4 2 1 34 34 H 1.09000 * 109.49566 * 301.33959 * 4 2 1 35 35 H 1.08997 * 109.58631 * 65.14746 * 5 4 2 36 36 H 1.08997 * 109.58980 * 185.44103 * 5 4 2 37 37 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.59084 * 66.17302 * 15 6 5 39 39 H 1.09004 * 109.58792 * 186.60074 * 15 6 5 40 40 H 0.96995 * 120.00584 * 24.84203 * 18 16 2 41 41 H 1.08004 * 125.42277 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2644 6 7 4.0678 -1.2489 0.0001 7 6 4.9757 -2.2740 0.0001 8 1 5.0084 -2.9663 0.8284 9 6 5.8540 -2.4233 -1.0643 10 7 6.0603 -1.4217 -1.8928 11 14 6.7432 -4.0460 -1.3211 12 1 5.9258 -4.9255 -2.1949 13 1 8.0580 -3.7937 -1.9636 14 1 6.9526 -4.7087 -0.0088 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6978 -1.7557 -1.2388 18 7 1.5255 -0.0488 -2.4459 19 6 1.4001 -0.7315 -3.6012 20 8 1.7137 -1.9063 -3.6507 21 6 0.8856 -0.0584 -4.7990 22 8 0.4996 1.2352 -4.8956 23 6 0.0978 1.4462 -6.1529 24 7 0.2206 0.3383 -6.8337 25 6 0.7099 -0.6131 -6.0320 26 6 1.0091 -2.0384 -6.4193 27 9 -0.1265 -2.8276 -6.2070 28 9 1.3662 -2.0892 -7.7710 29 9 2.0652 -2.5218 -5.6394 30 1 -0.3634 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2385 34 1 1.6572 -0.2206 2.1399 35 1 3.9143 0.3410 1.3673 36 1 3.9416 -1.2824 2.1000 37 1 6.6743 -1.5259 -2.6365 38 1 3.9143 0.3408 -1.3673 39 1 3.9417 -1.2847 -2.0984 40 1 1.2753 0.8875 -2.4063 41 1 -0.2691 2.3838 -6.5438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967441020.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:31 Heat of formation + Delta-G solvation = -156.886458 kcal Electronic energy + Delta-G solvation = -32318.035146 eV Core-core repulsion = 27398.862329 eV Total energy + Delta-G solvation = -4919.172817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -51.29165 -48.84130 -48.75221 -44.90270 -41.16039 -39.24961 -36.71320 -36.10780 -34.79158 -32.89938 -32.57595 -30.62203 -29.03163 -27.99780 -25.97634 -25.30804 -24.05065 -23.20796 -22.66022 -21.92152 -21.19587 -20.11206 -19.75101 -19.43069 -18.94347 -18.74558 -18.15574 -17.38431 -17.05251 -16.78760 -16.07129 -15.83917 -15.77663 -15.61676 -15.43202 -15.28098 -15.25963 -15.17759 -14.98973 -14.89959 -14.77699 -14.50645 -14.10173 -13.66865 -13.55816 -13.29885 -13.05920 -13.03954 -12.77180 -12.59344 -12.35684 -12.30762 -12.18393 -11.91289 -11.67016 -11.64332 -11.24472 -11.20532 -10.73833 -10.56158 -10.24357 -8.70667 -7.90755 -5.35427 -0.76930 0.83384 0.97555 1.35144 1.40486 1.46515 1.51224 1.67956 1.92148 2.31747 2.48267 2.63531 3.13514 3.23941 3.31120 3.50549 3.68478 3.76855 3.82834 3.98553 4.01370 4.13934 4.45575 4.55020 4.66320 4.73238 4.80382 4.92364 4.98329 5.07509 5.15124 5.18853 5.24212 5.33470 5.45083 5.53119 5.61676 5.74575 5.96320 6.26471 6.37816 6.87905 7.11819 7.84261 8.32504 9.14027 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.004438 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.245744 B = 6307.051932 C = 8081.713030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.083 0.917 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.262 4.262 8 H 0.069 0.931 9 C -0.046 4.046 10 N -0.929 5.929 11 Si 0.956 3.044 12 H -0.296 1.296 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.176 3.824 16 C 0.138 3.862 17 H 0.060 0.940 18 N -0.681 5.681 19 C 0.583 3.417 20 O -0.526 6.526 21 C -0.028 4.028 22 O -0.163 6.163 23 C 0.254 3.746 24 N -0.493 5.493 25 C -0.043 4.043 26 C 0.544 3.456 27 F -0.171 7.171 28 F -0.168 7.168 29 F -0.155 7.155 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.023 0.977 36 H 0.055 0.945 37 H 0.247 0.753 38 H 0.003 0.997 39 H 0.046 0.954 40 H 0.417 0.583 41 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.539 11.291 -4.456 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.331 5.331 7 C -0.393 4.393 8 H 0.087 0.913 9 C -0.242 4.242 10 N -0.575 5.575 11 Si 0.784 3.216 12 H -0.223 1.223 13 H -0.219 1.219 14 H -0.185 1.185 15 C 0.048 3.952 16 C 0.033 3.967 17 H 0.079 0.921 18 N -0.332 5.332 19 C 0.367 3.633 20 O -0.403 6.403 21 C -0.087 4.087 22 O -0.049 6.049 23 C 0.030 3.970 24 N -0.219 5.219 25 C -0.167 4.167 26 C 0.489 3.511 27 F -0.152 7.152 28 F -0.149 7.149 29 F -0.136 7.136 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.065 0.935 40 H 0.255 0.745 41 H 0.348 0.652 Dipole moment (debyes) X Y Z Total from point charges -17.337 10.392 -5.163 20.862 hybrid contribution 1.156 -0.783 -0.110 1.400 sum -16.181 9.609 -5.273 19.544 Atomic orbital electron populations 1.21791 0.92869 1.01826 1.02911 1.21287 0.96993 0.99551 0.92530 0.89881 1.21975 0.95596 1.00365 0.97541 1.21187 0.93623 0.96256 0.87899 1.44214 1.48093 1.39815 1.01014 1.19489 1.09627 1.03965 1.06185 0.91340 1.25705 0.98565 1.00003 0.99942 1.70142 1.38491 1.30622 1.18202 0.85435 0.77309 0.80544 0.78280 1.22306 1.21895 1.18535 1.20819 0.89389 0.95376 0.89572 1.21734 0.95156 0.96307 0.83532 0.92133 1.45731 1.63502 1.15056 1.08882 1.16651 0.78873 0.85945 0.81870 1.91063 1.50096 1.16021 1.83138 1.22692 1.05882 0.83673 0.96466 1.84623 1.60912 1.24541 1.34810 1.29999 0.91652 1.00138 0.75251 1.70192 1.18388 0.99808 1.33485 1.21502 1.07499 0.95892 0.91829 1.16992 0.75165 0.84207 0.74775 1.93212 1.51176 1.76186 1.94610 1.93210 1.91856 1.96806 1.33021 1.93421 1.57184 1.89028 1.74013 0.90201 0.91911 0.93685 0.92972 0.88390 0.95911 0.92624 0.94432 0.97881 0.93527 0.74498 0.65227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.02 71.98 0.65 -2.09 16 2 C -0.08 -2.29 2.27 -10.76 -0.02 -2.32 16 3 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.12 -3.37 5.36 30.67 0.16 -3.21 16 5 C 0.14 5.24 6.51 86.36 0.56 5.80 16 6 N -0.61 -30.47 2.99 -699.10 -2.09 -32.56 16 7 C -0.26 -14.81 9.59 84.03 0.81 -14.01 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 C -0.05 -2.70 4.91 84.86 0.42 -2.29 16 10 N -0.93 -57.16 11.19 21.65 0.24 -56.92 16 11 Si 0.96 47.62 29.59 68.60 2.03 49.65 16 12 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 14 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 15 C 0.18 8.49 4.89 86.36 0.42 8.92 16 16 C 0.14 5.04 2.06 45.07 0.09 5.13 16 17 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 18 N -0.68 -20.53 4.37 -446.08 -1.95 -22.48 16 19 C 0.58 20.23 7.70 86.46 0.67 20.90 16 20 O -0.53 -23.33 12.81 -4.32 -0.06 -23.39 16 21 C -0.03 -0.76 7.14 24.04 0.17 -0.59 16 22 O -0.16 -2.80 10.57 -7.06 -0.07 -2.88 16 23 C 0.25 2.91 13.21 130.42 1.72 4.63 16 24 N -0.49 -10.93 11.21 -303.13 -3.40 -14.33 16 25 C -0.04 -1.26 6.49 41.83 0.27 -0.98 16 26 C 0.54 18.23 3.34 71.24 0.24 18.47 16 27 F -0.17 -5.59 17.30 44.97 0.78 -4.82 16 28 F -0.17 -5.35 17.27 44.97 0.78 -4.57 16 29 F -0.16 -6.31 13.48 44.97 0.61 -5.71 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.09 7.35 -2.39 -0.02 1.07 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 2.13 7.94 -2.39 -0.02 2.11 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.05 2.74 6.04 -2.38 -0.01 2.72 16 40 H 0.42 9.22 8.10 -92.71 -0.75 8.47 16 41 H 0.33 -1.35 8.06 -2.91 -0.02 -1.38 16 Total: -1.00 -80.16 352.84 3.37 -76.79 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.35 Total: 2.83 kcal Atomic # 6 Polarization: 32.21 SS G_CDS: 6.16 Total: 38.36 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -7.20 Total: -126.28 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.13 Total: -26.26 kcal Atomic # 9 Polarization: -17.25 SS G_CDS: 2.16 Total: -15.09 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -80.16 3.37 -76.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967441020.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.096 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds