Wall clock time and date at job start Wed Apr 1 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46359 * 2 1 4 4 C 1.53039 * 109.46180 * 240.04058 * 2 1 3 5 5 C 1.53191 * 109.31701 * 178.61069 * 4 2 1 6 6 N 1.46936 * 108.77059 * 54.63757 * 5 4 2 7 7 C 1.36932 * 120.62705 * 126.41526 * 6 5 4 8 8 H 1.08000 * 120.00679 * 332.59786 * 7 6 5 9 9 C 1.38817 * 119.99809 * 152.60054 * 7 6 5 10 10 N 1.31622 * 120.00005 * 159.34931 * 9 7 6 11 11 Si 1.86808 * 119.99988 * 339.35484 * 9 7 6 12 12 H 1.48497 * 109.46879 * 92.91808 * 11 9 7 13 13 H 1.48496 * 109.47037 * 212.91988 * 11 9 7 14 14 H 1.48493 * 109.46803 * 332.92132 * 11 9 7 15 15 C 1.46926 * 118.73762 * 306.38792 * 6 5 4 16 16 C 1.53045 * 109.46261 * 119.97373 * 2 1 3 17 17 H 1.09003 * 109.49690 * 61.39786 * 16 2 1 18 18 N 1.46503 * 109.49579 * 301.33870 * 16 2 1 19 19 C 1.34775 * 119.99857 * 155.00106 * 18 16 2 20 20 O 1.21680 * 120.00211 * 359.97438 * 19 18 16 21 21 C 1.46724 * 119.99609 * 179.97438 * 19 18 16 22 22 O 1.35341 * 126.64600 * 359.97319 * 21 19 18 23 23 C 1.33664 * 107.68507 * 180.02562 * 22 21 19 24 24 N 1.30622 * 109.15460 * 0.02562 * 23 22 21 25 25 C 1.33688 * 108.99601 * 359.97438 * 24 23 22 26 26 C 1.50695 * 126.27586 * 179.97438 * 25 24 23 27 27 F 1.39905 * 109.47033 * 270.03930 * 26 25 24 28 28 F 1.39896 * 109.47199 * 30.04038 * 26 25 24 29 29 F 1.39900 * 109.47430 * 150.03996 * 26 25 24 30 30 H 1.09000 * 109.46829 * 300.02600 * 1 2 3 31 31 H 1.08997 * 109.47267 * 60.02736 * 1 2 3 32 32 H 1.08996 * 109.46793 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49956 * 298.56983 * 4 2 1 34 34 H 1.09003 * 109.49385 * 58.65911 * 4 2 1 35 35 H 1.08996 * 109.59248 * 174.42152 * 5 4 2 36 36 H 1.08999 * 109.58857 * 294.71343 * 5 4 2 37 37 H 0.96996 * 119.99521 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58976 * 293.82525 * 15 6 5 39 39 H 1.08995 * 109.58571 * 173.39695 * 15 6 5 40 40 H 0.97000 * 120.00152 * 334.99576 * 18 16 2 41 41 H 1.08002 * 125.42200 * 179.73934 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5714 -0.6884 -1.2644 6 7 4.0679 -1.2488 -0.0002 7 6 4.9765 -2.2733 -0.0004 8 1 5.0129 -2.9627 -0.8309 9 6 5.8508 -2.4259 1.0670 10 7 6.4276 -3.5888 1.2843 11 14 6.2086 -0.9806 2.1952 12 1 5.2797 -1.0149 3.3533 13 1 7.6091 -1.0669 2.6813 14 1 6.0213 0.2889 1.4479 15 6 3.5715 -0.6887 1.2642 16 6 2.0399 -0.7209 1.2500 17 1 1.6974 -1.7557 1.2384 18 7 1.5256 -0.0490 2.4460 19 6 1.3972 -0.7327 3.6003 20 8 1.7080 -1.9081 3.6491 21 6 0.8827 -0.0596 4.7982 22 8 0.4994 1.2348 4.8957 23 6 0.0966 1.4454 6.1527 24 7 0.2161 0.3365 6.8325 25 6 0.6988 -0.6167 6.0290 26 6 0.9878 -2.0449 6.4133 27 9 2.3064 -2.1474 6.8694 28 9 0.1110 -2.4410 7.4289 29 9 0.8142 -2.8721 5.2986 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7555 -1.2386 34 1 1.6572 -0.2204 -2.1398 35 1 3.9418 -1.2842 -2.0986 36 1 3.9143 0.3409 -1.3698 37 1 7.0382 -3.6954 2.0304 38 1 3.9144 0.3408 1.3674 39 1 3.9418 -1.2847 2.0982 40 1 1.2776 0.8879 2.4070 41 1 -0.2653 2.3843 6.5450 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967441021.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:39 Heat of formation + Delta-G solvation = -124.794377 kcal Electronic energy + Delta-G solvation = -32460.358881 eV Core-core repulsion = 27542.577682 eV Total energy + Delta-G solvation = -4917.781200 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.06395 -47.62543 -47.48682 -44.10059 -40.00972 -38.03226 -35.84337 -34.69090 -33.41739 -31.70540 -31.39800 -29.55106 -27.80740 -26.85012 -24.54645 -23.94648 -23.16255 -22.26144 -21.31737 -20.81240 -19.93379 -19.08186 -18.54798 -18.23744 -17.87231 -17.33745 -16.94016 -16.28689 -16.14788 -15.33521 -14.84774 -14.76821 -14.59621 -14.38176 -14.24051 -14.15221 -13.93265 -13.78833 -13.64418 -13.56530 -13.48322 -13.41030 -12.55822 -12.50511 -12.43120 -12.20827 -12.06637 -11.93858 -11.50323 -11.45527 -10.97084 -10.78008 -10.61550 -10.44606 -10.30392 -10.01744 -9.85351 -9.79016 -9.50390 -9.08785 -8.57628 -7.02068 -5.95223 -3.32147 0.15057 1.69889 1.74597 2.38078 2.77913 2.90905 3.33185 3.34927 3.45848 3.49282 3.66495 4.10512 4.33386 4.51562 4.53504 4.67600 4.81854 4.85986 4.96346 5.02912 5.14447 5.33267 5.40696 5.64180 5.70661 5.73477 5.82629 5.91715 6.02523 6.15017 6.22903 6.30400 6.40384 6.47557 6.58363 6.63840 6.75599 6.85415 7.31170 7.89779 7.96202 8.32558 8.91005 9.70686 10.05330 11.20412 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.004573 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.974193 B = 6122.046864 C = 7418.717861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.127 4.127 5 C 0.144 3.856 6 N -0.598 5.598 7 C -0.266 4.266 8 H 0.088 0.912 9 C 0.031 3.969 10 N -0.901 5.901 11 Si 0.876 3.124 12 H -0.287 1.287 13 H -0.301 1.301 14 H -0.271 1.271 15 C 0.118 3.882 16 C 0.130 3.870 17 H 0.099 0.901 18 N -0.701 5.701 19 C 0.584 3.416 20 O -0.471 6.471 21 C -0.017 4.017 22 O -0.176 6.176 23 C 0.209 3.791 24 N -0.457 5.457 25 C -0.036 4.036 26 C 0.551 3.449 27 F -0.164 7.164 28 F -0.168 7.168 29 F -0.136 7.136 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.026 0.974 39 H 0.081 0.919 40 H 0.400 0.600 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.520 13.363 5.841 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.166 4.166 5 C 0.019 3.981 6 N -0.322 5.322 7 C -0.394 4.394 8 H 0.106 0.894 9 C -0.169 4.169 10 N -0.543 5.543 11 Si 0.707 3.293 12 H -0.215 1.215 13 H -0.229 1.229 14 H -0.197 1.197 15 C -0.009 4.009 16 C 0.025 3.975 17 H 0.117 0.883 18 N -0.352 5.352 19 C 0.365 3.635 20 O -0.345 6.345 21 C -0.075 4.075 22 O -0.062 6.062 23 C -0.017 4.017 24 N -0.184 5.184 25 C -0.161 4.161 26 C 0.495 3.505 27 F -0.146 7.146 28 F -0.150 7.150 29 F -0.117 7.117 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.099 0.901 40 H 0.235 0.765 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -16.277 12.300 6.524 21.419 hybrid contribution 0.274 1.416 0.423 1.503 sum -16.003 13.716 6.947 22.192 Atomic orbital electron populations 1.21855 0.95382 1.02017 1.01030 1.21319 0.95159 0.99690 0.94943 0.91133 1.22081 0.98560 1.00604 0.95385 1.21004 0.90997 0.96700 0.89429 1.44262 1.48453 1.40531 0.98950 1.18883 1.09622 1.03149 1.07765 0.89429 1.25256 0.97270 0.96485 0.97898 1.69823 1.32198 1.21858 1.30380 0.87030 0.76528 0.84834 0.80933 1.21486 1.22947 1.19651 1.21732 0.90428 0.97442 0.91271 1.22059 0.96565 0.97627 0.81267 0.88257 1.46033 1.64719 1.14413 1.10010 1.16412 0.79862 0.86220 0.81002 1.91118 1.47679 1.13361 1.82295 1.23460 1.04152 0.82068 0.97859 1.84594 1.61058 1.26773 1.33727 1.28481 0.96516 0.99773 0.76975 1.70166 1.16450 0.98911 1.32868 1.21737 1.06809 0.96483 0.91095 1.16736 0.74900 0.83391 0.75459 1.93266 1.35839 1.96397 1.89069 1.93218 1.69147 1.91759 1.60851 1.93426 1.94877 1.72833 1.50600 0.93260 0.92638 0.92508 0.91449 0.91924 0.91474 0.95837 0.92634 0.95628 0.90128 0.76512 0.71600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.02 37.16 0.34 -1.23 16 2 C -0.09 -1.24 2.27 -90.58 -0.21 -1.44 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.85 5.36 -26.61 -0.14 -1.99 16 5 C 0.14 2.65 6.52 -3.71 -0.02 2.62 16 6 N -0.60 -13.91 2.77 -172.32 -0.48 -14.39 16 7 C -0.27 -7.44 10.04 -15.06 -0.15 -7.59 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.03 0.91 5.23 -17.43 -0.09 0.82 16 10 N -0.90 -28.18 13.97 55.49 0.78 -27.40 16 11 Si 0.88 22.97 24.35 -169.99 -4.14 18.83 16 12 H -0.29 -7.56 6.62 56.52 0.37 -7.18 16 13 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 14 H -0.27 -6.82 6.63 56.52 0.37 -6.45 16 15 C 0.12 2.56 3.78 -3.71 -0.01 2.54 16 16 C 0.13 2.20 2.07 -67.81 -0.14 2.06 16 17 H 0.10 1.94 7.58 -51.93 -0.39 1.55 16 18 N -0.70 -10.01 4.36 -54.98 -0.24 -10.25 16 19 C 0.58 9.53 7.70 -12.83 -0.10 9.43 16 20 O -0.47 -9.65 12.79 5.21 0.07 -9.58 16 21 C -0.02 -0.23 7.15 -36.84 -0.26 -0.49 16 22 O -0.18 -1.68 10.57 4.43 0.05 -1.63 16 23 C 0.21 1.54 13.21 52.25 0.69 2.23 16 24 N -0.46 -5.41 11.21 -10.88 -0.12 -5.53 16 25 C -0.04 -0.52 6.49 -82.47 -0.54 -1.06 16 26 C 0.55 8.76 3.34 36.00 0.12 8.89 16 27 F -0.16 -2.81 17.30 2.25 0.04 -2.77 16 28 F -0.17 -2.49 17.27 2.25 0.04 -2.45 16 29 F -0.14 -2.41 13.47 2.25 0.03 -2.38 16 30 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 38 H 0.03 0.54 7.08 -51.93 -0.37 0.18 16 39 H 0.08 2.05 4.50 -51.93 -0.23 1.82 16 40 H 0.40 4.32 8.10 -40.82 -0.33 3.98 16 41 H 0.27 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -35.08 346.41 -3.97 -39.06 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.69 Total: -1.50 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -0.52 Total: 14.79 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.06 Total: -57.57 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.11 Total: -11.22 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 0.11 Total: -7.61 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -4.14 Total: 18.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.08 -3.97 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967441021.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.738 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds