Wall clock time and date at job start Wed Apr 1 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.69656 * 2 1 4 4 C 1.53192 * 109.58598 * 120.35327 * 2 1 3 5 5 H 1.08991 * 109.49908 * 54.43991 * 4 2 1 6 6 N 1.46511 * 109.49844 * 294.37280 * 4 2 1 7 7 C 1.34773 * 119.99579 * 155.06280 * 6 4 2 8 8 O 1.21587 * 120.00204 * 0.02562 * 7 6 4 9 9 C 1.47517 * 119.99851 * 179.97438 * 7 6 4 10 10 C 1.36814 * 126.94646 * 180.02562 * 9 7 6 11 11 C 1.41260 * 103.85204 * 180.02562 * 10 9 7 12 12 C 1.50700 * 126.70885 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.46923 * 89.99894 * 12 11 10 14 14 F 1.39903 * 109.46682 * 210.00058 * 12 11 10 15 15 F 1.39898 * 109.46800 * 329.99686 * 12 11 10 16 16 N 1.30137 * 106.58579 * 359.97438 * 11 10 9 17 17 O 1.20881 * 111.97931 * 0.02562 * 16 11 10 18 18 C 1.53044 * 109.33596 * 174.41201 * 4 2 1 19 19 C 1.53038 * 109.53710 * 298.67830 * 18 4 2 20 20 C 1.53197 * 109.33626 * 61.32232 * 19 18 4 21 21 N 1.46920 * 109.58642 * 239.64698 * 2 1 3 22 22 C 1.36930 * 120.63494 * 6.57415 * 21 2 1 23 23 H 1.08007 * 119.99889 * 330.17122 * 22 21 2 24 24 C 1.38816 * 120.00212 * 150.16275 * 22 21 2 25 25 N 1.31613 * 119.99737 * 344.51368 * 24 22 21 26 26 Si 1.86795 * 120.00141 * 164.51058 * 24 22 21 27 27 H 1.48502 * 109.47055 * 59.99931 * 26 24 22 28 28 H 1.48495 * 109.47091 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47370 * 300.00542 * 26 24 22 30 30 H 1.09003 * 109.47587 * 299.64242 * 1 2 3 31 31 H 1.09001 * 109.47414 * 59.64690 * 1 2 3 32 32 H 1.09004 * 109.46851 * 179.64638 * 1 2 3 33 33 H 0.96996 * 119.99634 * 335.07390 * 6 4 2 34 34 H 1.08003 * 128.07465 * 359.97438 * 10 9 7 35 35 H 1.09000 * 109.46390 * 58.67079 * 18 4 2 36 36 H 1.09002 * 109.45745 * 178.63194 * 18 4 2 37 37 H 1.09003 * 109.47483 * 301.37053 * 19 18 4 38 38 H 1.09003 * 109.52506 * 181.30084 * 19 18 4 39 39 H 1.09004 * 109.58424 * 185.59184 * 20 19 18 40 40 H 1.08994 * 109.70399 * 65.23520 * 20 19 18 41 41 H 0.97002 * 119.99942 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 1 1.6026 -1.7250 1.2917 6 7 1.6705 0.0269 2.4436 7 6 1.5484 -0.6045 3.6280 8 8 1.7483 -1.8016 3.7023 9 6 1.1734 0.1569 4.8345 10 6 1.0109 -0.3359 6.1004 11 6 0.6564 0.7995 6.8624 12 6 0.3568 0.8358 8.3389 13 9 1.5383 1.0752 9.0487 14 9 -0.5614 1.8578 8.6033 15 9 -0.1848 -0.3917 8.7351 16 7 0.6391 1.8081 6.0402 17 8 0.9217 1.4773 4.9124 18 6 3.5675 -0.8485 1.1706 19 6 3.9570 -1.6656 -0.0634 20 6 3.4651 -0.9468 -1.3237 21 7 2.0225 -0.6995 -1.1945 22 6 1.1537 -1.1135 -2.1685 23 1 0.1398 -1.3810 -1.9095 24 6 1.5760 -1.1893 -3.4887 25 7 2.6864 -0.5882 -3.8599 26 14 0.5682 -2.1445 -4.7382 27 1 -0.7925 -1.5569 -4.8299 28 1 1.2293 -2.0730 -6.0660 29 1 0.4668 -3.5633 -4.3119 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.5113 0.9818 2.3843 34 1 1.1260 -1.3553 6.4382 35 1 4.0066 0.1467 1.1001 36 1 3.9373 -1.3456 2.0674 37 1 3.4984 -2.6527 -0.0051 38 1 5.0413 -1.7699 -0.1039 39 1 3.6519 -1.5717 -2.1971 40 1 3.9901 0.0020 -1.4341 41 1 2.9816 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993464138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:01 Heat of formation + Delta-G solvation = -97.737326 kcal Electronic energy + Delta-G solvation = -30695.106851 eV Core-core repulsion = 25778.498933 eV Total energy + Delta-G solvation = -4916.607918 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.73180 -48.25725 -48.22130 -45.84834 -40.04966 -37.84889 -35.32000 -34.52568 -33.00136 -32.47762 -31.70746 -29.37890 -27.78575 -26.50283 -25.20701 -24.53402 -23.63590 -22.13458 -21.01682 -20.83614 -19.92003 -19.25743 -19.11636 -18.74237 -18.32082 -17.62173 -16.61924 -16.41731 -15.96715 -15.13407 -15.10327 -15.02870 -14.96345 -14.63790 -14.57646 -14.35257 -14.35006 -14.14595 -13.85248 -13.77837 -13.51692 -13.08711 -12.92208 -12.66536 -12.52875 -11.84387 -11.63421 -11.50986 -11.22730 -10.98958 -10.83269 -10.70543 -10.58498 -10.44188 -10.37709 -10.20572 -10.12414 -9.80807 -9.52026 -8.96834 -8.52483 -6.75164 -5.86226 -3.31516 0.21072 0.97119 1.66631 2.05849 2.71869 2.81144 2.83125 3.28351 3.34506 3.40747 3.42225 3.72515 4.00138 4.09620 4.40708 4.45699 4.57057 5.09657 5.18194 5.27673 5.39479 5.45270 5.64336 5.82660 5.91699 6.09485 6.19100 6.29480 6.35622 6.40678 6.57079 6.64729 6.70082 6.88102 6.93971 7.06651 7.31242 7.37052 7.59338 7.75245 7.85367 8.37613 9.12951 9.75177 10.31176 11.22557 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.002190 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.725442 B =12783.975611 C =13105.911788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 H 0.031 0.969 4 C 0.127 3.873 5 H 0.093 0.907 6 N -0.696 5.696 7 C 0.600 3.400 8 O -0.505 6.505 9 C -0.059 4.059 10 C -0.117 4.117 11 C -0.089 4.089 12 C 0.561 3.439 13 F -0.163 7.163 14 F -0.163 7.163 15 F -0.159 7.159 16 N -0.290 5.290 17 O 0.156 5.844 18 C -0.118 4.118 19 C -0.140 4.140 20 C 0.168 3.832 21 N -0.580 5.580 22 C -0.256 4.256 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.283 1.283 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.405 0.595 34 H 0.198 0.802 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.021 0.979 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 3.231 20.952 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.059 3.941 3 H 0.049 0.951 4 C 0.023 3.977 5 H 0.111 0.889 6 N -0.345 5.345 7 C 0.381 3.619 8 O -0.380 6.380 9 C -0.125 4.125 10 C -0.140 4.140 11 C -0.247 4.247 12 C 0.506 3.494 13 F -0.144 7.144 14 F -0.144 7.144 15 F -0.141 7.141 16 N 0.019 4.981 17 O 0.069 5.931 18 C -0.157 4.157 19 C -0.180 4.180 20 C 0.043 3.957 21 N -0.303 5.303 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.732 3.268 27 H -0.208 1.208 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.216 0.784 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.109 3.680 21.034 21.458 hybrid contribution -0.413 -0.693 -0.274 0.851 sum -2.522 2.988 20.760 21.125 Atomic orbital electron populations 1.21846 0.95479 1.01858 1.00454 1.20564 0.93377 0.93688 0.86444 0.95124 1.22065 0.95686 0.96981 0.83012 0.88912 1.46127 1.67655 1.12905 1.07807 1.16423 0.78650 0.85979 0.80846 1.90917 1.50456 1.12639 1.83987 1.24669 1.06133 0.83413 0.98242 1.22679 1.00132 1.01125 0.90066 1.23419 1.11997 0.92709 0.96533 1.16571 0.74910 0.74447 0.83478 1.93280 1.47106 1.94132 1.79880 1.93271 1.66843 1.59605 1.94654 1.93267 1.85977 1.43254 1.91553 1.73828 1.11372 1.22535 0.90346 1.85046 1.61044 1.23838 1.23125 1.21786 0.94751 1.00491 0.98673 1.22186 0.99441 0.99698 0.96642 1.20850 0.83067 0.97311 0.94470 1.44019 1.03165 1.65028 1.18137 1.19105 0.95252 1.38240 0.85986 0.91189 1.25089 0.97854 0.99293 0.96995 1.70009 1.24060 1.43441 1.16941 0.86376 0.79592 0.80258 0.80563 1.20835 1.21635 1.20933 0.94253 0.91523 0.92525 0.76024 0.78439 0.92386 0.92971 0.92375 0.92774 0.89399 0.96103 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.84 37.16 0.29 -2.06 16 2 C 0.17 3.06 3.03 -67.60 -0.21 2.85 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.13 2.02 1.99 -67.80 -0.14 1.89 16 5 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 6 N -0.70 -8.61 4.57 -54.73 -0.25 -8.86 16 7 C 0.60 7.56 7.78 -12.48 -0.10 7.46 16 8 O -0.50 -7.94 16.58 5.29 0.09 -7.85 16 9 C -0.06 -0.61 7.29 -36.32 -0.26 -0.87 16 10 C -0.12 -1.09 10.64 -38.95 -0.41 -1.51 16 11 C -0.09 -0.87 6.63 -82.16 -0.54 -1.42 16 12 C 0.56 5.06 3.56 36.01 0.13 5.19 16 13 F -0.16 -1.49 17.30 2.25 0.04 -1.45 16 14 F -0.16 -1.58 17.27 2.25 0.04 -1.54 16 15 F -0.16 -1.35 17.08 2.25 0.04 -1.31 16 16 N -0.29 -3.12 12.00 33.52 0.40 -2.72 16 17 O 0.16 1.55 11.04 15.55 0.17 1.72 16 18 C -0.12 -1.89 5.46 -26.69 -0.15 -2.03 16 19 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 20 C 0.17 3.73 5.28 -3.70 -0.02 3.71 16 21 N -0.58 -13.24 2.99 -164.77 -0.49 -13.73 16 22 C -0.26 -6.49 8.58 -15.06 -0.13 -6.62 16 23 H 0.07 1.73 6.23 -52.48 -0.33 1.40 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.09 16 25 N -0.90 -24.85 11.23 55.49 0.62 -24.23 16 26 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H 0.04 0.53 7.79 -51.93 -0.40 0.13 16 31 H 0.07 1.23 7.67 -51.93 -0.40 0.83 16 32 H 0.06 1.01 7.40 -51.93 -0.38 0.62 16 33 H 0.40 4.06 8.43 -40.82 -0.34 3.72 16 34 H 0.20 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 2.21 6.15 -51.93 -0.32 1.89 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -28.26 356.53 -5.45 -33.70 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -4.66 Total: 1.10 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.78 Total: 4.00 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: 0.28 Total: -49.54 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: 0.26 Total: -6.13 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.12 Total: -4.30 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.26 -5.45 -33.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993464138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.037 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds