Wall clock time and date at job start Wed Apr 1 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.69656 * 2 1 4 4 C 1.53192 * 109.58598 * 120.35327 * 2 1 3 5 5 H 1.08991 * 109.49908 * 54.43991 * 4 2 1 6 6 N 1.46511 * 109.49844 * 294.37280 * 4 2 1 7 7 C 1.34773 * 119.99579 * 155.06280 * 6 4 2 8 8 O 1.21587 * 120.00204 * 0.02562 * 7 6 4 9 9 C 1.47517 * 119.99851 * 179.97438 * 7 6 4 10 10 C 1.36814 * 126.94646 * 180.02562 * 9 7 6 11 11 C 1.41260 * 103.85204 * 180.02562 * 10 9 7 12 12 C 1.50700 * 126.70885 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.46923 * 89.99894 * 12 11 10 14 14 F 1.39903 * 109.46682 * 210.00058 * 12 11 10 15 15 F 1.39898 * 109.46800 * 329.99686 * 12 11 10 16 16 N 1.30137 * 106.58579 * 359.97438 * 11 10 9 17 17 O 1.20881 * 111.97931 * 0.02562 * 16 11 10 18 18 C 1.53044 * 109.33596 * 174.41201 * 4 2 1 19 19 C 1.53038 * 109.53710 * 298.67830 * 18 4 2 20 20 C 1.53197 * 109.33626 * 61.32232 * 19 18 4 21 21 N 1.46920 * 109.58642 * 239.64698 * 2 1 3 22 22 C 1.36930 * 120.63494 * 6.57415 * 21 2 1 23 23 H 1.08007 * 119.99889 * 330.17122 * 22 21 2 24 24 C 1.38816 * 120.00212 * 150.16275 * 22 21 2 25 25 N 1.31613 * 119.99737 * 344.51368 * 24 22 21 26 26 Si 1.86795 * 120.00141 * 164.51058 * 24 22 21 27 27 H 1.48502 * 109.47055 * 59.99931 * 26 24 22 28 28 H 1.48495 * 109.47091 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47370 * 300.00542 * 26 24 22 30 30 H 1.09003 * 109.47587 * 299.64242 * 1 2 3 31 31 H 1.09001 * 109.47414 * 59.64690 * 1 2 3 32 32 H 1.09004 * 109.46851 * 179.64638 * 1 2 3 33 33 H 0.96996 * 119.99634 * 335.07390 * 6 4 2 34 34 H 1.08003 * 128.07465 * 359.97438 * 10 9 7 35 35 H 1.09000 * 109.46390 * 58.67079 * 18 4 2 36 36 H 1.09002 * 109.45745 * 178.63194 * 18 4 2 37 37 H 1.09003 * 109.47483 * 301.37053 * 19 18 4 38 38 H 1.09003 * 109.52506 * 181.30084 * 19 18 4 39 39 H 1.09004 * 109.58424 * 185.59184 * 20 19 18 40 40 H 1.08994 * 109.70399 * 65.23520 * 20 19 18 41 41 H 0.97002 * 119.99942 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 1 1.6026 -1.7250 1.2917 6 7 1.6705 0.0269 2.4436 7 6 1.5484 -0.6045 3.6280 8 8 1.7483 -1.8016 3.7023 9 6 1.1734 0.1569 4.8345 10 6 1.0109 -0.3359 6.1004 11 6 0.6564 0.7995 6.8624 12 6 0.3568 0.8358 8.3389 13 9 1.5383 1.0752 9.0487 14 9 -0.5614 1.8578 8.6033 15 9 -0.1848 -0.3917 8.7351 16 7 0.6391 1.8081 6.0402 17 8 0.9217 1.4773 4.9124 18 6 3.5675 -0.8485 1.1706 19 6 3.9570 -1.6656 -0.0634 20 6 3.4651 -0.9468 -1.3237 21 7 2.0225 -0.6995 -1.1945 22 6 1.1537 -1.1135 -2.1685 23 1 0.1398 -1.3810 -1.9095 24 6 1.5760 -1.1893 -3.4887 25 7 2.6864 -0.5882 -3.8599 26 14 0.5682 -2.1445 -4.7382 27 1 -0.7925 -1.5569 -4.8299 28 1 1.2293 -2.0730 -6.0660 29 1 0.4668 -3.5633 -4.3119 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5193 -0.8868 32 1 -0.3633 -1.0277 -0.0063 33 1 1.5113 0.9818 2.3843 34 1 1.1260 -1.3553 6.4382 35 1 4.0066 0.1467 1.1001 36 1 3.9373 -1.3456 2.0674 37 1 3.4984 -2.6527 -0.0051 38 1 5.0413 -1.7699 -0.1039 39 1 3.6519 -1.5717 -2.1971 40 1 3.9901 0.0020 -1.4341 41 1 2.9816 -0.6415 -4.7824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993464138.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:00 Heat of formation + Delta-G solvation = -114.483874 kcal Electronic energy + Delta-G solvation = -30695.833036 eV Core-core repulsion = 25778.498933 eV Total energy + Delta-G solvation = -4917.334103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.44061 -48.95438 -48.94148 -46.64952 -41.20317 -39.28628 -36.26343 -35.77669 -34.36820 -33.65010 -33.24096 -30.94517 -28.52818 -27.97169 -26.89549 -25.64768 -24.48888 -23.47503 -22.32514 -22.01091 -21.23413 -20.20721 -19.98689 -19.59678 -19.10706 -18.39080 -18.24860 -17.43238 -17.32465 -16.76568 -16.14651 -15.80757 -15.79044 -15.69811 -15.57764 -15.34175 -15.29259 -15.09240 -15.05875 -14.96212 -14.89753 -14.50218 -14.27059 -13.82958 -13.37205 -13.30844 -13.20404 -12.76654 -12.69814 -12.51651 -12.36756 -12.27027 -12.00897 -11.87162 -11.77326 -11.68617 -11.43381 -11.23425 -11.10620 -10.49299 -10.16588 -8.61988 -7.83317 -5.29219 -0.61605 0.20172 0.92443 1.18717 1.49475 1.52139 1.57440 1.74436 1.89754 2.09877 2.46110 2.56841 3.01730 3.23032 3.32867 3.33244 3.56713 3.69064 3.73249 3.91964 4.03704 4.24159 4.40294 4.42771 4.53006 4.65347 4.79109 4.90675 4.95605 5.07289 5.15367 5.17964 5.28295 5.43784 5.50882 5.61096 5.74452 5.80805 6.14286 6.44772 6.46873 6.86277 7.19794 7.89901 8.40739 9.23524 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.026898 B = 0.002190 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.725442 B =12783.975611 C =13105.911788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.163 3.837 3 H 0.036 0.964 4 C 0.145 3.855 5 H 0.073 0.927 6 N -0.687 5.687 7 C 0.610 3.390 8 O -0.535 6.535 9 C -0.064 4.064 10 C -0.102 4.102 11 C -0.092 4.092 12 C 0.567 3.433 13 F -0.163 7.163 14 F -0.167 7.167 15 F -0.154 7.154 16 N -0.302 5.302 17 O 0.165 5.835 18 C -0.112 4.112 19 C -0.129 4.129 20 C 0.174 3.826 21 N -0.599 5.599 22 C -0.253 4.253 23 H 0.074 0.926 24 C -0.047 4.047 25 N -0.933 5.933 26 Si 0.958 3.042 27 H -0.276 1.276 28 H -0.298 1.298 29 H -0.281 1.281 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.419 0.581 34 H 0.217 0.783 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.004 0.996 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 3.424 23.135 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 H 0.054 0.946 4 C 0.039 3.961 5 H 0.091 0.909 6 N -0.338 5.338 7 C 0.393 3.607 8 O -0.412 6.412 9 C -0.129 4.129 10 C -0.124 4.124 11 C -0.249 4.249 12 C 0.511 3.489 13 F -0.144 7.144 14 F -0.148 7.148 15 F -0.135 7.135 16 N 0.009 4.991 17 O 0.077 5.923 18 C -0.151 4.151 19 C -0.169 4.169 20 C 0.048 3.952 21 N -0.323 5.323 22 C -0.383 4.383 23 H 0.091 0.909 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.787 3.213 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.208 1.208 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.256 0.744 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.757 3.902 23.271 23.757 hybrid contribution -0.240 -0.709 -0.851 1.134 sum -2.997 3.194 22.420 22.843 Atomic orbital electron populations 1.21773 0.94396 1.01350 1.01388 1.20733 0.94333 0.93653 0.85654 0.94593 1.21527 0.95452 0.95900 0.83193 0.90872 1.45851 1.67659 1.13395 1.06865 1.16424 0.77657 0.85555 0.81058 1.90913 1.51709 1.14063 1.84550 1.24158 1.07547 0.83663 0.97578 1.22937 0.98324 1.01769 0.89408 1.23533 1.11919 0.92623 0.96823 1.16457 0.74793 0.74475 0.83132 1.93283 1.47131 1.94151 1.79841 1.93265 1.67020 1.59886 1.94652 1.93280 1.85897 1.42900 1.91470 1.73820 1.11615 1.22997 0.90678 1.85047 1.60854 1.23508 1.22872 1.21722 0.94761 1.00742 0.97829 1.22010 1.00432 0.98869 0.95559 1.20650 0.83147 0.96165 0.95195 1.44253 1.03128 1.65870 1.19056 1.19404 0.95596 1.36755 0.86546 0.90880 1.25742 0.99043 1.00750 0.98738 1.70151 1.25717 1.45354 1.16672 0.85481 0.78475 0.79081 0.78247 1.20131 1.22402 1.20768 0.90524 0.93402 0.93657 0.74357 0.76615 0.91319 0.91727 0.93330 0.90876 0.92977 0.97789 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.84 71.98 0.56 -3.71 16 2 C 0.16 5.79 3.03 44.98 0.14 5.92 16 3 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.15 4.37 1.99 45.07 0.09 4.46 16 5 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 6 N -0.69 -15.26 4.57 -445.34 -2.04 -17.29 16 7 C 0.61 13.84 7.78 86.69 0.67 14.51 16 8 O -0.54 -15.70 16.58 -3.99 -0.07 -15.77 16 9 C -0.06 -1.14 7.29 24.38 0.18 -0.97 16 10 C -0.10 -1.61 10.64 22.68 0.24 -1.37 16 11 C -0.09 -1.57 6.63 43.55 0.29 -1.28 16 12 C 0.57 8.99 3.56 71.24 0.25 9.25 16 13 F -0.16 -2.65 17.30 44.97 0.78 -1.87 16 14 F -0.17 -2.95 17.27 44.97 0.78 -2.17 16 15 F -0.15 -2.26 17.08 44.97 0.77 -1.49 16 16 N -0.30 -5.76 12.00 -48.86 -0.59 -6.34 16 17 O 0.16 2.85 11.04 65.84 0.73 3.58 16 18 C -0.11 -3.36 5.46 30.62 0.17 -3.19 16 19 C -0.13 -4.57 6.08 30.67 0.19 -4.38 16 20 C 0.17 7.85 5.28 86.36 0.46 8.31 16 21 N -0.60 -27.52 2.99 -675.22 -2.02 -29.53 16 22 C -0.25 -12.93 8.58 84.04 0.72 -12.21 16 23 H 0.07 3.62 6.23 -2.91 -0.02 3.61 16 24 C -0.05 -2.52 4.94 84.86 0.42 -2.10 16 25 N -0.93 -53.08 11.23 21.65 0.24 -52.83 16 26 Si 0.96 43.53 29.58 68.60 2.03 45.56 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H 0.08 1.88 7.79 -2.39 -0.02 1.86 16 31 H 0.05 1.72 7.67 -2.39 -0.02 1.70 16 32 H 0.04 1.56 7.40 -2.38 -0.02 1.54 16 33 H 0.42 7.12 8.43 -92.71 -0.78 6.33 16 34 H 0.22 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 2.72 6.15 -2.39 -0.01 2.70 16 40 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -61.43 356.53 5.32 -56.11 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.32 Total: 8.82 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 4.38 Total: 13.24 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.39 Total: -106.00 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.66 Total: -12.19 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 2.32 Total: -5.53 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -61.43 5.32 -56.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993464138.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.372 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds