Wall clock time and date at job start Wed Apr 1 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.70255 * 2 1 4 4 C 1.53630 * 109.66047 * 120.58737 * 2 1 3 5 5 H 1.08996 * 109.43277 * 294.41884 * 4 2 1 6 6 N 1.46507 * 109.65914 * 54.54416 * 4 2 1 7 7 C 1.34771 * 119.99497 * 204.84699 * 6 4 2 8 8 O 1.21607 * 120.00737 * 0.02562 * 7 6 4 9 9 C 1.47422 * 119.99809 * 180.02562 * 7 6 4 10 10 N 1.36069 * 126.44551 * 0.02562 * 9 7 6 11 11 C 1.29937 * 108.47717 * 179.97438 * 10 9 7 12 12 O 1.34056 * 109.24286 * 0.02562 * 11 10 9 13 13 C 1.34259 * 108.22290 * 359.72607 * 12 11 10 14 14 C 1.50705 * 126.52071 * 180.26734 * 13 12 11 15 15 F 1.39901 * 109.47027 * 270.18767 * 14 13 12 16 16 F 1.39891 * 109.47443 * 30.18988 * 14 13 12 17 17 F 1.39900 * 109.46750 * 150.19214 * 14 13 12 18 18 C 1.53036 * 109.24131 * 174.55147 * 4 2 1 19 19 C 1.53041 * 109.53863 * 298.51196 * 18 4 2 20 20 C 1.53190 * 109.31202 * 61.36368 * 19 18 4 21 21 N 1.46919 * 109.58924 * 239.63746 * 2 1 3 22 22 C 1.36942 * 120.63033 * 6.63390 * 21 2 1 23 23 H 1.07994 * 119.99757 * 330.16265 * 22 21 2 24 24 C 1.38803 * 119.99901 * 150.16500 * 22 21 2 25 25 N 1.31627 * 120.00440 * 344.27961 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 164.28036 * 24 22 21 27 27 H 1.48498 * 109.47151 * 266.30609 * 26 24 22 28 28 H 1.48498 * 109.46741 * 26.30055 * 26 24 22 29 29 H 1.48497 * 109.47281 * 146.30033 * 26 24 22 30 30 H 1.09002 * 109.46897 * 180.35595 * 1 2 3 31 31 H 1.08997 * 109.47044 * 300.35738 * 1 2 3 32 32 H 1.08993 * 109.46772 * 60.35800 * 1 2 3 33 33 H 0.96998 * 119.99673 * 24.85146 * 6 4 2 34 34 H 1.07996 * 125.38130 * 179.97438 * 11 10 9 35 35 H 1.09004 * 109.46143 * 178.49135 * 18 4 2 36 36 H 1.09003 * 109.44990 * 58.52369 * 18 4 2 37 37 H 1.09001 * 109.49567 * 301.41446 * 19 18 4 38 38 H 1.08994 * 109.52617 * 181.33132 * 19 18 4 39 39 H 1.09004 * 109.58998 * 185.57639 * 20 19 18 40 40 H 1.08997 * 109.70471 * 65.22174 * 20 19 18 41 41 H 0.96995 * 119.99891 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 1 1.7688 -0.1770 2.1387 6 7 1.4591 -2.0768 1.3049 7 6 1.3428 -2.7095 2.4892 8 8 1.7253 -2.1676 3.5084 9 6 0.7518 -4.0588 2.5491 10 7 0.2840 -4.7838 1.4969 11 6 -0.1583 -5.9207 1.9444 12 8 0.0056 -5.9660 3.2741 13 6 0.5767 -4.8160 3.6662 14 6 0.9496 -4.4347 5.0757 15 9 -0.1302 -3.7862 5.6846 16 9 1.2707 -5.5870 5.8011 17 9 2.0544 -3.5769 5.0499 18 6 3.5711 -0.8497 1.1679 19 6 3.9616 -1.6628 -0.0685 20 6 3.4658 -0.9421 -1.3261 21 7 2.0227 -0.6996 -1.1943 22 6 1.1539 -1.1128 -2.1689 23 1 0.1398 -1.3796 -1.9105 24 6 1.5767 -1.1887 -3.4888 25 7 2.6855 -0.5847 -3.8605 26 14 0.5720 -2.1482 -4.7377 27 1 1.0945 -3.5350 -4.8330 28 1 -0.8490 -2.1831 -4.3080 29 1 0.6719 -1.4893 -6.0647 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3632 0.5082 -0.8931 33 1 1.1538 -2.5090 0.4920 34 1 -0.5905 -6.7048 1.3406 35 1 3.9442 -1.3479 2.0628 36 1 4.0063 0.1473 1.0991 37 1 3.5062 -2.6515 -0.0124 38 1 5.0460 -1.7636 -0.1107 39 1 3.6534 -1.5638 -2.2016 40 1 3.9876 0.0087 -1.4346 41 1 2.9807 -0.6375 -4.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993506655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:46 Heat of formation + Delta-G solvation = -127.329202 kcal Electronic energy + Delta-G solvation = -32492.051876 eV Core-core repulsion = 27574.160758 eV Total energy + Delta-G solvation = -4917.891118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.35585 -47.93663 -47.75302 -43.95081 -39.78044 -37.67649 -35.34940 -34.02291 -32.43541 -31.86742 -31.67552 -29.50238 -26.91518 -26.16614 -25.04768 -24.31814 -22.82824 -21.90727 -20.95814 -20.61048 -19.25087 -18.85359 -18.75587 -18.47857 -17.90398 -17.11631 -16.49632 -16.19355 -15.45555 -15.09841 -14.94716 -14.73917 -14.67214 -14.35402 -14.28522 -14.13820 -13.93178 -13.89593 -13.70598 -13.52261 -13.15382 -13.01514 -12.86151 -12.60324 -11.88931 -11.79770 -11.30887 -11.27763 -11.23725 -10.98960 -10.73722 -10.64562 -10.53710 -10.14131 -10.04443 -9.97509 -9.82370 -9.68882 -9.33017 -8.64200 -8.48809 -6.69903 -5.82698 -3.28310 0.33859 1.40852 1.70946 2.66821 3.10953 3.20708 3.34100 3.40662 3.41665 3.42498 3.66757 4.01172 4.06752 4.43854 4.50577 4.86314 5.00805 5.26788 5.30637 5.52000 5.53529 5.60379 5.70287 5.92579 6.08700 6.19219 6.26443 6.38150 6.49347 6.60498 6.64768 6.74326 6.84296 6.90107 6.94920 7.03341 7.35909 7.64234 7.77408 7.82631 8.34387 8.40829 9.16429 9.79064 10.36016 11.25229 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.003677 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.219632 B = 7613.698569 C = 8532.427341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 H 0.044 0.956 4 C 0.131 3.869 5 H 0.081 0.919 6 N -0.670 5.670 7 C 0.577 3.423 8 O -0.526 6.526 9 C 0.030 3.970 10 N -0.456 5.456 11 C 0.219 3.781 12 O -0.175 6.175 13 C -0.097 4.097 14 C 0.566 3.434 15 F -0.161 7.161 16 F -0.171 7.171 17 F -0.123 7.123 18 C -0.121 4.121 19 C -0.141 4.141 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.255 4.255 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.279 1.279 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.419 0.581 34 H 0.269 0.731 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 -9.550 14.228 17.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.061 0.939 4 C 0.025 3.975 5 H 0.099 0.901 6 N -0.321 5.321 7 C 0.360 3.640 8 O -0.404 6.404 9 C -0.093 4.093 10 N -0.184 5.184 11 C -0.009 4.009 12 O -0.061 6.061 13 C -0.154 4.154 14 C 0.510 3.490 15 F -0.142 7.142 16 F -0.152 7.152 17 F -0.103 7.103 18 C -0.160 4.160 19 C -0.181 4.181 20 C 0.046 3.954 21 N -0.309 5.309 22 C -0.384 4.384 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.204 1.204 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.257 0.743 34 H 0.285 0.715 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.037 0.963 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.704 -8.928 14.143 17.131 hybrid contribution -0.599 -1.109 -0.500 1.356 sum -4.303 -10.037 13.643 17.475 Atomic orbital electron populations 1.21795 0.95550 1.01512 1.00600 1.20816 0.93412 0.93902 0.86659 0.93898 1.21792 0.93219 0.82103 1.00385 0.90135 1.45849 1.59312 1.18184 1.08732 1.16772 0.79575 0.82534 0.85143 1.90900 1.50106 1.65603 1.33741 1.22077 1.01624 0.97815 0.87775 1.71075 1.13417 1.03953 1.29949 1.28567 0.97095 0.97589 0.77649 1.84366 1.59929 1.34615 1.27159 1.23122 1.07820 0.88396 0.96088 1.16457 0.76336 0.75391 0.80784 1.93275 1.55338 1.81750 1.83886 1.93244 1.92831 1.49783 1.79361 1.93463 1.51833 1.69114 1.95917 1.21779 0.95054 1.00739 0.98385 1.22150 0.99029 0.99593 0.97283 1.20795 0.83122 0.97182 0.94321 1.44187 1.03088 1.64823 1.18838 1.19159 0.95216 1.37934 0.86110 0.91165 1.25091 0.97817 0.99314 0.96991 1.70029 1.24191 1.43413 1.16727 0.86319 0.79847 0.79800 0.81027 1.21503 1.20380 1.21898 0.92781 0.94148 0.91597 0.74265 0.71536 0.92943 0.91575 0.92881 0.93345 0.89604 0.96283 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.75 37.16 0.29 -2.17 16 2 C 0.16 3.09 3.22 -67.37 -0.22 2.87 16 3 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.13 2.29 2.33 -67.58 -0.16 2.13 16 5 H 0.08 1.38 7.58 -51.93 -0.39 0.98 16 6 N -0.67 -11.51 3.47 -54.54 -0.19 -11.70 16 7 C 0.58 9.70 7.72 -12.52 -0.10 9.60 16 8 O -0.53 -9.58 12.81 5.27 0.07 -9.51 16 9 C 0.03 0.44 6.96 -83.02 -0.58 -0.14 16 10 N -0.46 -5.97 11.06 -11.48 -0.13 -6.10 16 11 C 0.22 1.90 13.19 51.96 0.69 2.59 16 12 O -0.17 -1.82 10.72 6.49 0.07 -1.75 16 13 C -0.10 -1.26 6.75 -35.08 -0.24 -1.50 16 14 C 0.57 7.36 3.34 36.01 0.12 7.48 16 15 F -0.16 -2.10 17.30 2.25 0.04 -2.06 16 16 F -0.17 -2.02 17.30 2.25 0.04 -1.98 16 17 F -0.12 -1.83 13.49 2.25 0.03 -1.80 16 18 C -0.12 -2.10 5.57 -26.69 -0.15 -2.25 16 19 C -0.14 -2.66 5.93 -26.61 -0.16 -2.81 16 20 C 0.17 3.86 5.28 -3.71 -0.02 3.84 16 21 N -0.59 -13.30 2.64 -164.52 -0.43 -13.73 16 22 C -0.25 -6.35 8.57 -15.06 -0.13 -6.47 16 23 H 0.07 1.72 6.24 -52.49 -0.33 1.39 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -24.90 11.23 55.49 0.62 -24.28 16 26 Si 0.90 20.72 29.58 -169.99 -5.03 15.69 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 30 H 0.05 0.98 6.42 -51.93 -0.33 0.65 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.27 7.62 -51.93 -0.40 0.87 16 33 H 0.42 7.64 7.52 -40.82 -0.31 7.33 16 34 H 0.27 0.73 8.06 -52.49 -0.42 0.30 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 2.19 6.13 -51.93 -0.32 1.87 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -29.58 346.75 -4.98 -34.56 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.56 Total: 4.18 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: -0.73 Total: 13.26 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.13 Total: -55.81 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.14 Total: -11.27 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.11 Total: -5.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.58 -4.98 -34.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993506655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.774 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds