Wall clock time and date at job start Wed Apr 1 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.70255 * 2 1 4 4 C 1.53630 * 109.66047 * 120.58737 * 2 1 3 5 5 H 1.08996 * 109.43277 * 294.41884 * 4 2 1 6 6 N 1.46507 * 109.65914 * 54.54416 * 4 2 1 7 7 C 1.34771 * 119.99497 * 204.84699 * 6 4 2 8 8 O 1.21607 * 120.00737 * 0.02562 * 7 6 4 9 9 C 1.47422 * 119.99809 * 180.02562 * 7 6 4 10 10 N 1.36069 * 126.44551 * 0.02562 * 9 7 6 11 11 C 1.29937 * 108.47717 * 179.97438 * 10 9 7 12 12 O 1.34056 * 109.24286 * 0.02562 * 11 10 9 13 13 C 1.34259 * 108.22290 * 359.72607 * 12 11 10 14 14 C 1.50705 * 126.52071 * 180.26734 * 13 12 11 15 15 F 1.39901 * 109.47027 * 270.18767 * 14 13 12 16 16 F 1.39891 * 109.47443 * 30.18988 * 14 13 12 17 17 F 1.39900 * 109.46750 * 150.19214 * 14 13 12 18 18 C 1.53036 * 109.24131 * 174.55147 * 4 2 1 19 19 C 1.53041 * 109.53863 * 298.51196 * 18 4 2 20 20 C 1.53190 * 109.31202 * 61.36368 * 19 18 4 21 21 N 1.46919 * 109.58924 * 239.63746 * 2 1 3 22 22 C 1.36942 * 120.63033 * 6.63390 * 21 2 1 23 23 H 1.07994 * 119.99757 * 330.16265 * 22 21 2 24 24 C 1.38803 * 119.99901 * 150.16500 * 22 21 2 25 25 N 1.31627 * 120.00440 * 344.27961 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 164.28036 * 24 22 21 27 27 H 1.48498 * 109.47151 * 266.30609 * 26 24 22 28 28 H 1.48498 * 109.46741 * 26.30055 * 26 24 22 29 29 H 1.48497 * 109.47281 * 146.30033 * 26 24 22 30 30 H 1.09002 * 109.46897 * 180.35595 * 1 2 3 31 31 H 1.08997 * 109.47044 * 300.35738 * 1 2 3 32 32 H 1.08993 * 109.46772 * 60.35800 * 1 2 3 33 33 H 0.96998 * 119.99673 * 24.85146 * 6 4 2 34 34 H 1.07996 * 125.38130 * 179.97438 * 11 10 9 35 35 H 1.09004 * 109.46143 * 178.49135 * 18 4 2 36 36 H 1.09003 * 109.44990 * 58.52369 * 18 4 2 37 37 H 1.09001 * 109.49567 * 301.41446 * 19 18 4 38 38 H 1.08994 * 109.52617 * 181.33132 * 19 18 4 39 39 H 1.09004 * 109.58998 * 185.57639 * 20 19 18 40 40 H 1.08997 * 109.70471 * 65.22174 * 20 19 18 41 41 H 0.96995 * 119.99891 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 1 1.7688 -0.1770 2.1387 6 7 1.4591 -2.0768 1.3049 7 6 1.3428 -2.7095 2.4892 8 8 1.7253 -2.1676 3.5084 9 6 0.7518 -4.0588 2.5491 10 7 0.2840 -4.7838 1.4969 11 6 -0.1583 -5.9207 1.9444 12 8 0.0056 -5.9660 3.2741 13 6 0.5767 -4.8160 3.6662 14 6 0.9496 -4.4347 5.0757 15 9 -0.1302 -3.7862 5.6846 16 9 1.2707 -5.5870 5.8011 17 9 2.0544 -3.5769 5.0499 18 6 3.5711 -0.8497 1.1679 19 6 3.9616 -1.6628 -0.0685 20 6 3.4658 -0.9421 -1.3261 21 7 2.0227 -0.6996 -1.1943 22 6 1.1539 -1.1128 -2.1689 23 1 0.1398 -1.3796 -1.9105 24 6 1.5767 -1.1887 -3.4888 25 7 2.6855 -0.5847 -3.8605 26 14 0.5720 -2.1482 -4.7377 27 1 1.0945 -3.5350 -4.8330 28 1 -0.8490 -2.1831 -4.3080 29 1 0.6719 -1.4893 -6.0647 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8867 32 1 -0.3632 0.5082 -0.8931 33 1 1.1538 -2.5090 0.4920 34 1 -0.5905 -6.7048 1.3406 35 1 3.9442 -1.3479 2.0628 36 1 4.0063 0.1473 1.0991 37 1 3.5062 -2.6515 -0.0124 38 1 5.0460 -1.7636 -0.1107 39 1 3.6534 -1.5638 -2.2016 40 1 3.9876 0.0087 -1.4346 41 1 2.9807 -0.6375 -4.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993506655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:45 Heat of formation + Delta-G solvation = -147.396809 kcal Electronic energy + Delta-G solvation = -32492.922073 eV Core-core repulsion = 27574.160758 eV Total energy + Delta-G solvation = -4918.761315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -51.36763 -48.91897 -48.81068 -44.83016 -41.15737 -39.19216 -36.28697 -35.65410 -34.01219 -33.38896 -32.80313 -31.16630 -28.20236 -27.49443 -26.81826 -25.38906 -23.95467 -23.32095 -22.41247 -21.95180 -20.36515 -20.24176 -19.84386 -19.50216 -18.97369 -18.26192 -18.00971 -17.27206 -16.93826 -16.60420 -16.27647 -15.84907 -15.76275 -15.62090 -15.48907 -15.33852 -15.22094 -15.06155 -14.96202 -14.88551 -14.65643 -14.51610 -14.24290 -13.90633 -13.54076 -12.96610 -12.90703 -12.75139 -12.68575 -12.45557 -12.31357 -12.19228 -12.14291 -11.90099 -11.67807 -11.40990 -11.27548 -11.02430 -10.77872 -10.47557 -10.00541 -8.59189 -7.79521 -5.26159 -0.64118 0.48968 0.84260 1.50821 1.53067 1.60450 1.71793 1.93861 2.00248 2.46674 2.55939 2.83289 3.01910 3.05116 3.36478 3.42205 3.60316 3.84446 3.99557 4.05709 4.15197 4.20636 4.39432 4.56422 4.66458 4.74162 4.85275 4.94700 4.99585 5.03146 5.11761 5.21064 5.34473 5.44472 5.52214 5.58823 5.76418 5.80885 6.02571 6.46505 6.49781 7.01644 7.21998 7.91436 8.44440 9.26884 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.003677 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.219632 B = 7613.698569 C = 8532.427341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.039 0.961 4 C 0.140 3.860 5 H 0.090 0.910 6 N -0.672 5.672 7 C 0.577 3.423 8 O -0.544 6.544 9 C 0.011 3.989 10 N -0.495 5.495 11 C 0.253 3.747 12 O -0.167 6.167 13 C -0.097 4.097 14 C 0.568 3.432 15 F -0.163 7.163 16 F -0.163 7.163 17 F -0.137 7.137 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.180 3.820 21 N -0.596 5.596 22 C -0.245 4.245 23 H 0.077 0.923 24 C -0.047 4.047 25 N -0.935 5.935 26 Si 0.958 3.042 27 H -0.289 1.289 28 H -0.266 1.266 29 H -0.303 1.303 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.414 0.586 34 H 0.326 0.674 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.053 0.947 40 H -0.002 1.002 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 -11.281 15.364 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.057 0.943 4 C 0.034 3.966 5 H 0.108 0.892 6 N -0.322 5.322 7 C 0.361 3.639 8 O -0.422 6.422 9 C -0.111 4.111 10 N -0.223 5.223 11 C 0.026 3.974 12 O -0.054 6.054 13 C -0.155 4.155 14 C 0.512 3.488 15 F -0.144 7.144 16 F -0.145 7.145 17 F -0.118 7.118 18 C -0.153 4.153 19 C -0.166 4.166 20 C 0.054 3.946 21 N -0.320 5.320 22 C -0.375 4.375 23 H 0.094 0.906 24 C -0.243 4.243 25 N -0.581 5.581 26 Si 0.787 3.213 27 H -0.216 1.216 28 H -0.191 1.191 29 H -0.231 1.231 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.252 0.748 34 H 0.340 0.660 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.016 0.984 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.089 -10.662 15.310 19.338 hybrid contribution -0.217 -0.620 -0.798 1.034 sum -5.306 -11.282 14.512 19.132 Atomic orbital electron populations 1.21700 0.94325 1.01486 1.01035 1.20955 0.94450 0.93598 0.86010 0.94328 1.21605 0.93168 0.82466 0.99393 0.89220 1.45791 1.59621 1.17973 1.08795 1.17007 0.79070 0.83317 0.84492 1.90885 1.50826 1.66426 1.34101 1.21758 1.02993 0.97344 0.89019 1.71060 1.15489 1.05671 1.30087 1.29859 0.93586 0.96984 0.76927 1.84415 1.59514 1.33360 1.28074 1.22958 1.08050 0.89006 0.95531 1.16427 0.75908 0.75336 0.81113 1.93269 1.55302 1.81854 1.83960 1.93257 1.92759 1.49219 1.79218 1.93429 1.52596 1.69705 1.96030 1.21730 0.95096 1.00917 0.97598 1.21952 0.99757 0.98858 0.96021 1.20568 0.83310 0.95845 0.94885 1.44351 1.02899 1.65414 1.19364 1.19445 0.95519 1.36136 0.86405 0.90568 1.25746 0.98979 1.00791 0.98770 1.70179 1.26008 1.45497 1.16456 0.85392 0.79185 0.78228 0.78470 1.21593 1.19094 1.23070 0.93000 0.91551 0.93248 0.74841 0.65991 0.92288 0.90807 0.93459 0.91872 0.92858 0.98375 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.75 71.98 0.56 -3.88 16 2 C 0.16 5.95 3.22 45.13 0.15 6.10 16 3 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 4 C 0.14 4.71 2.33 45.21 0.11 4.82 16 5 H 0.09 2.92 7.58 -2.39 -0.02 2.90 16 6 N -0.67 -22.36 3.47 -444.73 -1.54 -23.91 16 7 C 0.58 18.76 7.72 86.66 0.67 19.43 16 8 O -0.54 -19.27 12.81 -4.05 -0.05 -19.32 16 9 C 0.01 0.30 6.96 40.41 0.28 0.58 16 10 N -0.50 -11.81 11.06 -305.14 -3.37 -15.18 16 11 C 0.25 3.43 13.19 130.52 1.72 5.15 16 12 O -0.17 -2.96 10.72 0.30 0.00 -2.96 16 13 C -0.10 -2.35 6.75 25.19 0.17 -2.18 16 14 C 0.57 14.02 3.34 71.24 0.24 14.26 16 15 F -0.16 -4.04 17.30 44.97 0.78 -3.27 16 16 F -0.16 -3.59 17.30 44.97 0.78 -2.81 16 17 F -0.14 -4.00 13.49 44.97 0.61 -3.39 16 18 C -0.11 -3.85 5.57 30.62 0.17 -3.68 16 19 C -0.13 -4.71 5.93 30.67 0.18 -4.53 16 20 C 0.18 8.24 5.28 86.36 0.46 8.70 16 21 N -0.60 -27.19 2.64 -674.42 -1.78 -28.97 16 22 C -0.24 -12.21 8.57 84.03 0.72 -11.49 16 23 H 0.08 3.66 6.24 -2.91 -0.02 3.65 16 24 C -0.05 -2.50 4.94 84.86 0.42 -2.09 16 25 N -0.94 -53.20 11.23 21.65 0.24 -52.96 16 26 Si 0.96 42.92 29.58 68.60 2.03 44.95 16 27 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 H 0.05 1.81 6.42 -2.39 -0.02 1.79 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.86 7.62 -2.39 -0.02 1.84 16 33 H 0.41 14.75 7.52 -92.71 -0.70 14.06 16 34 H 0.33 -0.10 8.06 -2.91 -0.02 -0.12 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.81 7.53 -2.39 -0.02 1.79 16 38 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 2.80 6.13 -2.38 -0.01 2.78 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.25 13.77 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -65.19 346.75 3.94 -61.26 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.41 Total: 15.35 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 5.84 Total: 31.21 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.45 Total: -121.02 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.16 Total: -9.47 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.19 3.94 -61.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993506655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.141 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds