Wall clock time and date at job start Wed Apr 1 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.58807 * 2 1 4 4 C 1.53183 * 109.58773 * 239.57130 * 2 1 3 5 5 H 1.08993 * 109.50303 * 65.62516 * 4 2 1 6 6 N 1.46504 * 109.49633 * 305.56099 * 4 2 1 7 7 C 1.34776 * 119.99812 * 154.99909 * 6 4 2 8 8 O 1.21608 * 120.00530 * 0.02562 * 7 6 4 9 9 C 1.47425 * 119.99816 * 179.97438 * 7 6 4 10 10 C 1.36091 * 126.44930 * 180.02562 * 9 7 6 11 11 O 1.34254 * 106.95067 * 179.97438 * 10 9 7 12 12 C 1.34049 * 108.22585 * 359.97438 * 11 10 9 13 13 C 1.50700 * 125.37500 * 180.02562 * 12 11 10 14 14 F 1.39897 * 109.47234 * 269.97668 * 13 12 11 15 15 F 1.39901 * 109.47311 * 29.97736 * 13 12 11 16 16 F 1.39901 * 109.46851 * 149.97678 * 13 12 11 17 17 N 1.29938 * 109.24445 * 359.74412 * 12 11 10 18 18 C 1.53039 * 109.31177 * 185.58300 * 4 2 1 19 19 C 1.53035 * 109.54327 * 61.36223 * 18 4 2 20 20 C 1.53625 * 109.24206 * 298.51173 * 19 18 4 21 21 N 1.46924 * 109.58437 * 120.27920 * 2 1 3 22 22 C 1.36939 * 120.63142 * 353.37194 * 21 2 1 23 23 H 1.08008 * 119.99950 * 29.70551 * 22 21 2 24 24 C 1.38812 * 120.00331 * 209.69728 * 22 21 2 25 25 N 1.31619 * 119.99930 * 24.36105 * 24 22 21 26 26 Si 1.86799 * 120.00411 * 204.36244 * 24 22 21 27 27 H 1.48505 * 109.46852 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47177 * 240.00095 * 26 24 22 29 29 H 1.48491 * 109.47276 * 120.00036 * 26 24 22 30 30 H 1.09000 * 109.47018 * 299.72377 * 1 2 3 31 31 H 1.09001 * 109.46778 * 59.71636 * 1 2 3 32 32 H 1.08992 * 109.47166 * 179.71702 * 1 2 3 33 33 H 0.96996 * 120.00240 * 335.00099 * 6 4 2 34 34 H 1.08006 * 126.52368 * 359.94368 * 10 9 7 35 35 H 1.09002 * 109.45893 * 181.38882 * 18 4 2 36 36 H 1.08997 * 109.45726 * 301.33750 * 18 4 2 37 37 H 1.08998 * 109.49648 * 58.58396 * 19 18 4 38 38 H 1.09000 * 109.50137 * 178.68364 * 19 18 4 39 39 H 1.09002 * 109.73994 * 295.12108 * 20 19 18 40 40 H 1.08999 * 109.66637 * 174.54871 * 20 19 18 41 41 H 0.97004 * 119.99924 * 4.04686 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7309 -1.2444 5 1 1.7661 -0.1696 -2.1365 6 7 1.4509 -2.0693 -1.3048 7 6 1.3279 -2.6990 -2.4900 8 8 1.7094 -2.1565 -3.5094 9 6 0.7319 -4.0460 -2.5507 10 6 0.5456 -4.7981 -3.6696 11 8 -0.0230 -5.9492 -3.2772 12 6 -0.1823 -5.9061 -1.9469 13 6 -0.7853 -7.0006 -1.1045 14 9 -2.1667 -6.8040 -1.0038 15 9 -0.5330 -8.2407 -1.7008 16 9 -0.2159 -6.9729 0.1731 17 7 0.2709 -4.7742 -1.4978 18 6 3.5675 -0.8495 -1.1689 19 6 3.9569 -1.6656 0.0658 20 6 3.4657 -0.9403 1.3277 21 7 2.0226 -0.6980 1.1954 22 6 1.1537 -1.1098 2.1705 23 1 0.1389 -1.3750 1.9126 24 6 1.5771 -1.1866 3.4902 25 7 2.5877 -0.4501 3.9010 26 14 0.7128 -2.3351 4.6832 27 1 -0.3839 -3.0466 3.9786 28 1 0.1484 -1.5469 5.8081 29 1 1.6863 -3.3243 5.2112 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.1469 -2.5023 -0.4918 34 1 0.8054 -4.5213 -4.6807 35 1 3.9379 -1.3474 -2.0650 36 1 4.0062 0.1459 -1.0994 37 1 3.4983 -2.6528 0.0088 38 1 5.0412 -1.7695 0.1062 39 1 3.9878 0.0109 1.4324 40 1 3.6532 -1.5608 2.2040 41 1 2.9988 0.1889 3.2980 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993548310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:10 Heat of formation + Delta-G solvation = -134.376250 kcal Electronic energy + Delta-G solvation = -31988.326522 eV Core-core repulsion = 27070.129821 eV Total energy + Delta-G solvation = -4918.196701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.67922 -48.22344 -48.15062 -44.06416 -39.86646 -37.82520 -35.51560 -34.25089 -32.55333 -31.95223 -31.60351 -29.32324 -27.22252 -26.44350 -25.05422 -24.50047 -22.63675 -21.93473 -21.14443 -20.80760 -19.30348 -19.16425 -18.86892 -18.78776 -17.69651 -17.23112 -17.03905 -16.75355 -15.54690 -15.03429 -14.99489 -14.93721 -14.68901 -14.55781 -14.46650 -14.27164 -14.25983 -14.11868 -13.78769 -13.60477 -13.39456 -13.29875 -13.11470 -12.69599 -11.98768 -11.85439 -11.52502 -11.43374 -11.27815 -11.02480 -10.84371 -10.64335 -10.28009 -10.20524 -10.07916 -10.05447 -9.83826 -9.81121 -9.17029 -8.73503 -8.36874 -6.90297 -6.08266 -3.27308 0.47854 1.15538 1.34954 2.26283 2.85303 3.17595 3.22173 3.51279 3.53416 3.66714 3.68810 3.75058 4.21073 4.46731 4.55579 4.75863 5.01792 5.11200 5.24623 5.36676 5.40368 5.52048 5.57468 5.77927 5.98569 6.09182 6.12279 6.29162 6.34627 6.44410 6.49334 6.58161 6.67156 6.75396 6.84730 6.95006 7.06156 7.17139 7.77737 8.01566 8.29166 8.56682 9.07498 9.82334 10.25600 11.20530 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.004425 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.431253 B = 6326.482354 C = 8297.033041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.161 3.839 3 H 0.040 0.960 4 C 0.132 3.868 5 H 0.081 0.919 6 N -0.676 5.676 7 C 0.594 3.406 8 O -0.546 6.546 9 C -0.060 4.060 10 C 0.048 3.952 11 O -0.170 6.170 12 C 0.090 3.910 13 C 0.588 3.412 14 F -0.153 7.153 15 F -0.158 7.158 16 F -0.137 7.137 17 N -0.381 5.381 18 C -0.121 4.121 19 C -0.136 4.136 20 C 0.151 3.849 21 N -0.593 5.593 22 C -0.351 4.351 23 H 0.062 0.938 24 C -0.020 4.020 25 N -0.916 5.916 26 Si 1.066 2.934 27 H -0.290 1.290 28 H -0.295 1.295 29 H -0.291 1.291 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.420 0.580 34 H 0.246 0.754 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.018 0.982 40 H 0.079 0.921 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -10.615 -14.434 18.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.053 3.947 3 H 0.057 0.943 4 C 0.026 3.974 5 H 0.099 0.901 6 N -0.326 5.326 7 C 0.378 3.622 8 O -0.425 6.425 9 C -0.182 4.182 10 C -0.027 4.027 11 O -0.054 6.054 12 C -0.120 4.120 13 C 0.531 3.469 14 F -0.134 7.134 15 F -0.139 7.139 16 F -0.118 7.118 17 N -0.112 5.112 18 C -0.160 4.160 19 C -0.176 4.176 20 C 0.025 3.975 21 N -0.318 5.318 22 C -0.480 4.480 23 H 0.080 0.920 24 C -0.223 4.223 25 N -0.556 5.556 26 Si 0.896 3.104 27 H -0.216 1.216 28 H -0.222 1.222 29 H -0.217 1.217 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.258 0.742 34 H 0.262 0.738 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.097 0.903 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.374 -10.687 -12.866 17.288 hybrid contribution -0.142 0.098 -1.802 1.810 sum -4.515 -10.588 -14.667 18.645 Atomic orbital electron populations 1.21769 0.95305 1.01642 1.00459 1.20711 0.93718 0.93626 0.86601 0.94254 1.21666 0.93038 0.82446 1.00281 0.90128 1.45900 1.59346 1.18352 1.08976 1.16621 0.78758 0.82138 0.84700 1.90805 1.51403 1.65933 1.34359 1.22206 1.08268 0.99150 0.88626 1.25703 0.93736 0.81555 1.01666 1.84388 1.60307 1.37341 1.23335 1.25493 1.08079 0.97475 0.80910 1.15961 0.76002 0.77561 0.77333 1.93322 1.29342 1.94754 1.95976 1.93294 1.93880 1.43192 1.83530 1.93366 1.84454 1.96027 1.37964 1.70774 1.07969 1.01196 1.31273 1.21776 0.95212 1.00646 0.98315 1.22109 0.99119 0.99657 0.96682 1.21062 0.84167 0.96729 0.95511 1.44264 1.02581 1.65385 1.19550 1.19964 0.96263 1.43635 0.88119 0.91992 1.25822 1.00114 1.00511 0.95825 1.70732 1.26063 1.21130 1.37675 0.83506 0.75352 0.76041 0.75472 1.21624 1.22226 1.21738 0.91630 0.94248 0.92658 0.74172 0.73761 0.92777 0.91602 0.92443 0.93147 0.96422 0.90313 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.73 37.16 0.29 -2.18 16 2 C 0.16 3.12 3.20 -67.60 -0.22 2.90 16 3 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.13 2.27 2.32 -67.81 -0.16 2.12 16 5 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 6 N -0.68 -11.53 3.45 -54.77 -0.19 -11.72 16 7 C 0.59 9.48 7.78 -12.52 -0.10 9.38 16 8 O -0.55 -9.40 16.55 5.27 0.09 -9.31 16 9 C -0.06 -0.82 6.99 -83.02 -0.58 -1.40 16 10 C 0.05 0.48 11.94 29.96 0.36 0.84 16 11 O -0.17 -1.77 10.70 6.52 0.07 -1.70 16 12 C 0.09 1.10 7.53 -13.08 -0.10 1.00 16 13 C 0.59 6.36 3.57 36.01 0.13 6.49 16 14 F -0.15 -1.64 17.30 2.25 0.04 -1.60 16 15 F -0.16 -1.53 17.28 2.25 0.04 -1.49 16 16 F -0.14 -1.68 17.23 2.25 0.04 -1.64 16 17 N -0.38 -5.54 10.96 -7.65 -0.08 -5.62 16 18 C -0.12 -2.04 5.58 -26.69 -0.15 -2.19 16 19 C -0.14 -2.52 5.95 -26.39 -0.16 -2.67 16 20 C 0.15 3.34 4.71 -3.48 -0.02 3.32 16 21 N -0.59 -13.49 2.48 -164.51 -0.41 -13.90 16 22 C -0.35 -8.97 8.48 -15.06 -0.13 -9.09 16 23 H 0.06 1.59 6.30 -52.48 -0.33 1.26 16 24 C -0.02 -0.54 4.69 -17.43 -0.08 -0.62 16 25 N -0.92 -26.42 12.51 55.49 0.69 -25.73 16 26 Si 1.07 24.77 29.98 -169.99 -5.10 19.68 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H 0.06 1.31 7.62 -51.93 -0.40 0.91 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.04 6.39 -51.93 -0.33 0.71 16 33 H 0.42 7.85 7.50 -40.82 -0.31 7.54 16 34 H 0.25 1.48 8.06 -52.48 -0.42 1.05 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 40 H 0.08 1.98 6.41 -51.93 -0.33 1.65 16 41 H 0.27 7.82 6.64 -40.82 -0.27 7.55 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -29.39 352.82 -4.89 -34.29 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.49 Total: 5.56 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -0.91 Total: 7.88 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.01 Total: -56.97 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.16 Total: -11.01 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.12 Total: -4.73 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.10 Total: 19.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.39 -4.89 -34.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993548310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.090 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds