Wall clock time and date at job start Wed Apr 1 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.59029 * 2 1 4 4 C 1.53196 * 109.58557 * 239.71332 * 2 1 3 5 5 H 1.09000 * 109.49954 * 305.42245 * 4 2 1 6 6 N 1.46502 * 109.49517 * 65.48524 * 4 2 1 7 7 C 1.34776 * 120.00025 * 204.93648 * 6 4 2 8 8 O 1.21605 * 120.00100 * 359.97438 * 7 6 4 9 9 C 1.47397 * 119.99986 * 180.02562 * 7 6 4 10 10 C 1.37361 * 128.56642 * 359.97240 * 9 7 6 11 11 O 1.33484 * 106.34402 * 180.02562 * 10 9 7 12 12 N 1.20657 * 113.15585 * 0.02562 * 11 10 9 13 13 C 1.30010 * 112.30534 * 359.97438 * 12 11 10 14 14 C 1.50696 * 127.34135 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.46680 * 5.03023 * 14 13 12 16 16 F 1.39903 * 109.47157 * 125.02424 * 14 13 12 17 17 F 1.39894 * 109.47661 * 245.02528 * 14 13 12 18 18 C 1.53036 * 109.33793 * 185.45359 * 4 2 1 19 19 C 1.53038 * 109.53973 * 61.32211 * 18 4 2 20 20 C 1.53193 * 109.33623 * 298.67831 * 19 18 4 21 21 N 1.46928 * 108.77569 * 54.62324 * 20 19 18 22 22 C 1.36938 * 120.63122 * 126.41305 * 21 20 19 23 23 H 1.07994 * 119.99451 * 208.64167 * 22 21 20 24 24 C 1.38812 * 119.99858 * 28.63765 * 22 21 20 25 25 N 1.31615 * 120.00034 * 14.70789 * 24 22 21 26 26 Si 1.86803 * 119.99684 * 194.70696 * 24 22 21 27 27 H 1.48492 * 109.47079 * 60.00035 * 26 24 22 28 28 H 1.48493 * 109.47081 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46726 * 300.00250 * 26 24 22 30 30 H 1.09003 * 109.47395 * 180.28744 * 1 2 3 31 31 H 1.09007 * 109.46934 * 300.28832 * 1 2 3 32 32 H 1.09001 * 109.47068 * 60.28207 * 1 2 3 33 33 H 0.96997 * 119.99839 * 24.93464 * 6 4 2 34 34 H 1.08004 * 126.82774 * 0.02562 * 10 9 7 35 35 H 1.09009 * 109.45729 * 181.37085 * 18 4 2 36 36 H 1.08997 * 109.46035 * 301.32702 * 18 4 2 37 37 H 1.09002 * 109.49653 * 178.71672 * 19 18 4 38 38 H 1.08994 * 109.49831 * 58.64806 * 19 18 4 39 39 H 1.09000 * 109.58520 * 294.83305 * 20 19 18 40 40 H 1.08997 * 109.69925 * 174.47995 * 20 19 18 41 41 H 0.96998 * 119.99575 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6044 -1.7245 -1.2924 6 7 1.6675 0.0279 -2.4437 7 6 1.5453 -0.6032 -3.6282 8 8 1.7475 -1.7999 -3.7033 9 6 1.1675 0.1574 -4.8330 10 6 0.9012 1.4999 -4.9496 11 8 0.6060 1.7141 -6.2337 12 7 0.6529 0.7124 -6.9048 13 6 0.9818 -0.3341 -6.2070 14 6 1.1384 -1.7493 -6.7004 15 9 0.9847 -1.7782 -8.0906 16 9 2.4106 -2.2230 -6.3621 17 9 0.1657 -2.5607 -6.1066 18 6 3.5677 -0.8442 -1.1733 19 6 3.9602 -1.6610 0.0599 20 6 3.4685 -0.9437 1.3210 21 7 2.0253 -0.6991 1.1936 22 6 1.1585 -1.1144 2.1690 23 1 0.1393 -1.3650 1.9146 24 6 1.5899 -1.2132 3.4847 25 7 2.7189 -0.6449 3.8515 26 14 0.5679 -2.1528 4.7346 27 1 0.4256 -3.5645 4.2967 28 1 1.2413 -2.1098 6.0573 29 1 -0.7760 -1.5304 4.8433 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.5066 0.9826 -2.3839 34 1 0.9257 2.2358 -4.1595 35 1 3.9374 -1.3403 -2.0708 36 1 4.0049 0.1518 -1.1029 37 1 5.0448 -1.7627 0.0988 38 1 3.5040 -2.6492 0.0021 39 1 3.9920 0.0062 1.4287 40 1 3.6578 -1.5664 2.1953 41 1 3.0201 -0.7136 4.7710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993590556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:18 Heat of formation + Delta-G solvation = -96.346033 kcal Electronic energy + Delta-G solvation = -31615.293562 eV Core-core repulsion = 26698.745975 eV Total energy + Delta-G solvation = -4916.547587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.36798 -47.92607 -47.82038 -45.75176 -39.92501 -37.76625 -34.75603 -34.56853 -33.07355 -32.44927 -31.67496 -29.36519 -27.62957 -26.46011 -25.29788 -24.83945 -22.39964 -22.29367 -20.81967 -20.63097 -19.79921 -19.22342 -18.96714 -18.52135 -18.18320 -17.98395 -16.57557 -16.31621 -15.91018 -15.17442 -14.99799 -14.77699 -14.67156 -14.54448 -14.24852 -14.02293 -13.97856 -13.93509 -13.83479 -13.69925 -13.44263 -12.90244 -12.75804 -12.65054 -12.41709 -11.81146 -11.62628 -11.26753 -11.20624 -10.97043 -10.81978 -10.68050 -10.43781 -10.39117 -10.32076 -10.15676 -10.10517 -9.77273 -9.49138 -8.88432 -8.51635 -6.75982 -5.85310 -3.30298 0.49774 0.74966 1.90537 2.28172 2.96011 2.96648 3.00531 3.32760 3.34758 3.40946 3.42666 4.02174 4.05474 4.18065 4.33232 4.44354 4.68019 4.87178 5.20642 5.29054 5.42302 5.49301 5.68307 5.86409 5.94998 6.10461 6.21724 6.28716 6.42011 6.46671 6.60038 6.67961 6.74970 6.87520 6.95170 7.27555 7.34164 7.43321 7.62892 7.75227 8.06107 8.38018 9.13617 9.75962 10.31016 11.23070 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002718 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.837212 B =10298.683930 C =10481.571127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.168 3.832 3 H 0.029 0.971 4 C 0.131 3.869 5 H 0.091 0.909 6 N -0.705 5.705 7 C 0.583 3.417 8 O -0.513 6.513 9 C -0.201 4.201 10 C 0.002 3.998 11 O 0.132 5.868 12 N -0.297 5.297 13 C -0.040 4.040 14 C 0.562 3.438 15 F -0.168 7.168 16 F -0.151 7.151 17 F -0.155 7.155 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.168 3.832 21 N -0.581 5.581 22 C -0.255 4.255 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.903 5.903 26 Si 0.903 3.097 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.395 0.605 34 H 0.242 0.758 35 H 0.051 0.949 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.092 0.908 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.123 6.062 -18.445 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.109 0.891 6 N -0.355 5.355 7 C 0.367 3.633 8 O -0.389 6.389 9 C -0.209 4.209 10 C -0.079 4.079 11 O 0.059 5.941 12 N 0.007 4.993 13 C -0.203 4.203 14 C 0.507 3.493 15 F -0.150 7.150 16 F -0.132 7.132 17 F -0.136 7.136 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.042 3.958 21 N -0.304 5.304 22 C -0.384 4.384 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.547 5.547 26 Si 0.733 3.267 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.209 1.209 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.229 0.771 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.110 0.890 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.193 5.303 -19.591 20.414 hybrid contribution -0.261 -0.375 1.364 1.438 sum -2.454 4.928 -18.227 19.040 Atomic orbital electron populations 1.21836 0.95573 1.01893 1.00240 1.20549 0.93257 0.93578 0.86599 0.95394 1.21961 0.95451 0.97008 0.83021 0.89103 1.45951 1.69446 1.12121 1.07932 1.16737 0.78326 0.86695 0.81571 1.90890 1.49401 1.13647 1.84945 1.22400 1.10265 0.93826 0.94444 1.26607 0.96902 0.96952 0.87453 1.84620 1.63067 1.28811 1.17578 1.73745 1.14105 0.93020 1.18453 1.24655 1.08079 0.95574 0.92002 1.16468 0.75401 0.82648 0.74823 1.93244 1.95429 1.96765 1.29531 1.93306 1.38925 1.89009 1.91973 1.93288 1.62651 1.74089 1.83598 1.21773 0.94964 1.00245 0.98634 1.22188 0.99369 0.99754 0.96705 1.20888 0.82893 0.97334 0.94643 1.44032 1.03201 1.65056 1.18133 1.19133 0.94745 1.38300 0.86243 0.91147 1.25061 0.97744 0.99586 0.96947 1.69996 1.22854 1.44641 1.17183 0.86364 0.79583 0.80214 0.80566 1.20928 1.21622 1.20865 0.92525 0.91627 0.94371 0.77115 0.74241 0.93008 0.92638 0.92875 0.92424 0.96289 0.89005 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 7.84 37.16 0.29 -2.01 16 2 C 0.17 3.06 3.03 -67.60 -0.20 2.85 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C 0.13 2.12 1.99 -67.81 -0.14 1.99 16 5 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 6 N -0.70 -8.58 4.56 -54.77 -0.25 -8.83 16 7 C 0.58 7.89 7.78 -12.53 -0.10 7.79 16 8 O -0.51 -9.05 15.19 5.27 0.08 -8.97 16 9 C -0.20 -2.12 6.47 -102.89 -0.67 -2.79 16 10 C 0.00 0.01 11.85 30.41 0.36 0.37 16 11 O 0.13 1.02 11.06 18.67 0.21 1.22 16 12 N -0.30 -3.17 11.85 34.78 0.41 -2.76 16 13 C -0.04 -0.48 6.83 -79.77 -0.54 -1.02 16 14 C 0.56 7.39 3.01 36.00 0.11 7.50 16 15 F -0.17 -2.08 17.19 2.25 0.04 -2.04 16 16 F -0.15 -2.16 16.38 2.25 0.04 -2.12 16 17 F -0.16 -2.20 17.23 2.25 0.04 -2.16 16 18 C -0.12 -1.94 5.46 -26.69 -0.15 -2.09 16 19 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 20 C 0.17 3.77 5.29 -3.71 -0.02 3.75 16 21 N -0.58 -13.35 2.99 -164.78 -0.49 -13.84 16 22 C -0.25 -6.49 8.63 -15.06 -0.13 -6.62 16 23 H 0.07 1.75 6.20 -52.49 -0.33 1.43 16 24 C 0.01 0.14 4.97 -17.43 -0.09 0.06 16 25 N -0.90 -24.92 11.09 55.49 0.62 -24.31 16 26 Si 0.90 20.92 29.58 -169.99 -5.03 15.89 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.06 1.02 7.41 -51.93 -0.39 0.64 16 31 H 0.06 1.19 7.66 -51.92 -0.40 0.79 16 32 H 0.04 0.49 7.78 -51.93 -0.40 0.09 16 33 H 0.40 3.33 7.79 -40.82 -0.32 3.01 16 34 H 0.24 0.17 7.68 -52.48 -0.40 -0.23 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 2.34 6.01 -51.93 -0.31 2.03 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -31.36 352.97 -5.07 -36.42 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.61 Total: -0.82 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.43 Total: 6.99 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.28 Total: -49.74 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.29 Total: -7.74 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.32 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.36 -5.07 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993590556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.924 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds