Wall clock time and date at job start Wed Apr 1 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08991 * 109.59029 * 2 1 4 4 C 1.53196 * 109.58557 * 239.71332 * 2 1 3 5 5 H 1.09000 * 109.49954 * 305.42245 * 4 2 1 6 6 N 1.46502 * 109.49517 * 65.48524 * 4 2 1 7 7 C 1.34776 * 120.00025 * 204.93648 * 6 4 2 8 8 O 1.21605 * 120.00100 * 359.97438 * 7 6 4 9 9 C 1.47397 * 119.99986 * 180.02562 * 7 6 4 10 10 C 1.37361 * 128.56642 * 359.97240 * 9 7 6 11 11 O 1.33484 * 106.34402 * 180.02562 * 10 9 7 12 12 N 1.20657 * 113.15585 * 0.02562 * 11 10 9 13 13 C 1.30010 * 112.30534 * 359.97438 * 12 11 10 14 14 C 1.50696 * 127.34135 * 179.97438 * 13 12 11 15 15 F 1.39899 * 109.46680 * 5.03023 * 14 13 12 16 16 F 1.39903 * 109.47157 * 125.02424 * 14 13 12 17 17 F 1.39894 * 109.47661 * 245.02528 * 14 13 12 18 18 C 1.53036 * 109.33793 * 185.45359 * 4 2 1 19 19 C 1.53038 * 109.53973 * 61.32211 * 18 4 2 20 20 C 1.53193 * 109.33623 * 298.67831 * 19 18 4 21 21 N 1.46928 * 108.77569 * 54.62324 * 20 19 18 22 22 C 1.36938 * 120.63122 * 126.41305 * 21 20 19 23 23 H 1.07994 * 119.99451 * 208.64167 * 22 21 20 24 24 C 1.38812 * 119.99858 * 28.63765 * 22 21 20 25 25 N 1.31615 * 120.00034 * 14.70789 * 24 22 21 26 26 Si 1.86803 * 119.99684 * 194.70696 * 24 22 21 27 27 H 1.48492 * 109.47079 * 60.00035 * 26 24 22 28 28 H 1.48493 * 109.47081 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46726 * 300.00250 * 26 24 22 30 30 H 1.09003 * 109.47395 * 180.28744 * 1 2 3 31 31 H 1.09007 * 109.46934 * 300.28832 * 1 2 3 32 32 H 1.09001 * 109.47068 * 60.28207 * 1 2 3 33 33 H 0.96997 * 119.99839 * 24.93464 * 6 4 2 34 34 H 1.08004 * 126.82774 * 0.02562 * 10 9 7 35 35 H 1.09009 * 109.45729 * 181.37085 * 18 4 2 36 36 H 1.08997 * 109.46035 * 301.32702 * 18 4 2 37 37 H 1.09002 * 109.49653 * 178.71672 * 19 18 4 38 38 H 1.08994 * 109.49831 * 58.64806 * 19 18 4 39 39 H 1.09000 * 109.58520 * 294.83305 * 20 19 18 40 40 H 1.08997 * 109.69925 * 174.47995 * 20 19 18 41 41 H 0.96998 * 119.99575 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6044 -1.7245 -1.2924 6 7 1.6675 0.0279 -2.4437 7 6 1.5453 -0.6032 -3.6282 8 8 1.7475 -1.7999 -3.7033 9 6 1.1675 0.1574 -4.8330 10 6 0.9012 1.4999 -4.9496 11 8 0.6060 1.7141 -6.2337 12 7 0.6529 0.7124 -6.9048 13 6 0.9818 -0.3341 -6.2070 14 6 1.1384 -1.7493 -6.7004 15 9 0.9847 -1.7782 -8.0906 16 9 2.4106 -2.2230 -6.3621 17 9 0.1657 -2.5607 -6.1066 18 6 3.5677 -0.8442 -1.1733 19 6 3.9602 -1.6610 0.0599 20 6 3.4685 -0.9437 1.3210 21 7 2.0253 -0.6991 1.1936 22 6 1.1585 -1.1144 2.1690 23 1 0.1393 -1.3650 1.9146 24 6 1.5899 -1.2132 3.4847 25 7 2.7189 -0.6449 3.8515 26 14 0.5679 -2.1528 4.7346 27 1 0.4256 -3.5645 4.2967 28 1 1.2413 -2.1098 6.0573 29 1 -0.7760 -1.5304 4.8433 30 1 -0.3634 -1.0277 0.0052 31 1 -0.3633 0.5183 0.8875 32 1 -0.3633 0.5095 -0.8925 33 1 1.5066 0.9826 -2.3839 34 1 0.9257 2.2358 -4.1595 35 1 3.9374 -1.3403 -2.0708 36 1 4.0049 0.1518 -1.1029 37 1 5.0448 -1.7627 0.0988 38 1 3.5040 -2.6492 0.0021 39 1 3.9920 0.0062 1.4287 40 1 3.6578 -1.5664 2.1953 41 1 3.0201 -0.7136 4.7710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993590556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:17 Heat of formation + Delta-G solvation = -117.073204 kcal Electronic energy + Delta-G solvation = -31616.192359 eV Core-core repulsion = 26698.745975 eV Total energy + Delta-G solvation = -4917.446384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.38481 -48.93223 -48.87553 -46.50618 -41.09643 -39.21415 -35.98814 -35.54425 -34.39789 -33.65884 -33.15784 -30.91451 -28.60467 -27.88247 -26.89833 -25.98411 -23.73278 -23.22243 -22.32033 -21.74030 -21.16750 -20.17494 -19.91680 -19.51990 -19.02454 -19.00506 -18.22758 -17.35265 -17.19851 -16.73669 -16.09803 -15.89890 -15.72530 -15.67631 -15.54723 -15.34958 -15.28264 -15.03317 -15.01357 -14.97692 -14.64522 -14.49843 -14.25193 -13.67699 -13.33928 -13.28496 -13.09954 -12.77489 -12.68948 -12.50453 -12.35118 -12.00896 -11.99452 -11.81795 -11.75714 -11.63140 -11.31466 -11.12138 -11.07553 -10.49028 -10.07765 -8.62845 -7.82919 -5.28144 -0.18140 -0.00509 1.03729 1.48427 1.51844 1.56392 1.59755 1.98067 2.04317 2.13231 2.45813 2.55677 3.04938 3.19470 3.33087 3.37875 3.56879 3.66908 3.87285 3.98005 4.07928 4.24239 4.39901 4.44171 4.55402 4.66149 4.81492 4.90985 4.97310 5.07795 5.16432 5.21468 5.30654 5.47113 5.52689 5.63557 5.73584 5.81812 6.43186 6.45469 6.65795 7.10511 7.19968 7.90694 8.40190 9.23495 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.002718 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.837212 B =10298.683930 C =10481.571127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.165 3.835 3 H 0.045 0.955 4 C 0.148 3.852 5 H 0.059 0.941 6 N -0.688 5.688 7 C 0.588 3.412 8 O -0.562 6.562 9 C -0.234 4.234 10 C 0.060 3.940 11 O 0.152 5.848 12 N -0.308 5.308 13 C -0.063 4.063 14 C 0.557 3.443 15 F -0.168 7.168 16 F -0.163 7.163 17 F -0.166 7.166 18 C -0.110 4.110 19 C -0.131 4.131 20 C 0.175 3.825 21 N -0.601 5.601 22 C -0.252 4.252 23 H 0.073 0.927 24 C -0.047 4.047 25 N -0.932 5.932 26 Si 0.957 3.043 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.274 1.274 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.418 0.582 34 H 0.301 0.699 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.007 0.993 40 H 0.054 0.946 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 8.684 -19.845 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 H 0.062 0.938 4 C 0.042 3.958 5 H 0.077 0.923 6 N -0.340 5.340 7 C 0.374 3.626 8 O -0.441 6.441 9 C -0.243 4.243 10 C -0.021 4.021 11 O 0.077 5.923 12 N -0.002 5.002 13 C -0.225 4.225 14 C 0.502 3.498 15 F -0.149 7.149 16 F -0.144 7.144 17 F -0.148 7.148 18 C -0.148 4.148 19 C -0.171 4.171 20 C 0.049 3.951 21 N -0.325 5.325 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.786 3.214 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.200 1.200 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.316 0.684 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.098 7.954 -21.046 22.711 hybrid contribution -0.010 -1.116 1.713 2.045 sum -3.108 6.838 -19.333 20.741 Atomic orbital electron populations 1.21772 0.94347 1.01037 1.01670 1.20743 0.94302 0.93839 0.85245 0.93757 1.21393 0.94945 0.95713 0.83784 0.92298 1.45554 1.69106 1.12969 1.06343 1.16992 0.77116 0.86209 0.82292 1.90877 1.51511 1.16026 1.85715 1.22015 1.14008 0.95554 0.92697 1.27603 0.91461 0.95781 0.87210 1.84626 1.61852 1.27522 1.18295 1.73773 1.14268 0.93140 1.19053 1.24521 1.09879 0.95005 0.93060 1.16663 0.74722 0.83612 0.74835 1.93235 1.95372 1.96840 1.29458 1.93272 1.39680 1.89352 1.92093 1.93255 1.63006 1.74695 1.83816 1.21692 0.95237 1.00679 0.97233 1.22027 1.00235 0.98740 0.96075 1.20657 0.83159 0.96295 0.94980 1.44265 1.03071 1.65990 1.19141 1.19417 0.95067 1.36967 0.86810 0.90951 1.25688 0.98902 1.01010 0.98652 1.70133 1.24385 1.46438 1.16920 0.85496 0.78592 0.78944 0.78348 1.21132 1.22287 1.19973 0.94491 0.93209 0.89898 0.74358 0.68363 0.92772 0.90830 0.91138 0.94089 0.97477 0.92716 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.84 71.98 0.56 -3.51 16 2 C 0.17 5.69 3.03 44.97 0.14 5.83 16 3 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.15 4.55 1.99 45.07 0.09 4.64 16 5 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 6 N -0.69 -14.33 4.56 -445.46 -2.03 -16.36 16 7 C 0.59 14.54 7.78 86.66 0.67 15.22 16 8 O -0.56 -19.65 15.19 -4.05 -0.06 -19.71 16 9 C -0.23 -4.18 6.47 -18.74 -0.12 -4.30 16 10 C 0.06 0.37 11.85 67.61 0.80 1.17 16 11 O 0.15 1.64 11.06 77.07 0.85 2.49 16 12 N -0.31 -5.75 11.85 -44.78 -0.53 -6.28 16 13 C -0.06 -1.39 6.83 45.16 0.31 -1.08 16 14 C 0.56 14.65 3.01 71.23 0.21 14.87 16 15 F -0.17 -4.16 17.19 44.97 0.77 -3.38 16 16 F -0.16 -4.75 16.38 44.97 0.74 -4.01 16 17 F -0.17 -4.81 17.23 44.97 0.78 -4.04 16 18 C -0.11 -3.43 5.46 30.62 0.17 -3.27 16 19 C -0.13 -4.87 6.08 30.67 0.19 -4.68 16 20 C 0.17 7.96 5.29 86.36 0.46 8.42 16 21 N -0.60 -27.58 2.99 -675.23 -2.02 -29.61 16 22 C -0.25 -12.95 8.63 84.03 0.73 -12.23 16 23 H 0.07 3.61 6.20 -2.91 -0.02 3.60 16 24 C -0.05 -2.52 4.97 84.86 0.42 -2.10 16 25 N -0.93 -52.80 11.09 21.65 0.24 -52.56 16 26 Si 0.96 43.69 29.58 68.60 2.03 45.71 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 30 H 0.04 1.28 7.41 -2.39 -0.02 1.27 16 31 H 0.05 1.71 7.66 -2.38 -0.02 1.69 16 32 H 0.08 1.80 7.78 -2.39 -0.02 1.78 16 33 H 0.42 4.68 7.79 -92.71 -0.72 3.96 16 34 H 0.30 -2.14 7.68 -2.91 -0.02 -2.16 16 35 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.05 2.90 6.01 -2.39 -0.01 2.88 16 41 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -73.41 352.97 5.77 -67.65 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: 0.38 Total: 1.13 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 4.63 Total: 18.97 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.35 Total: -104.81 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.79 Total: -17.22 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 2.28 Total: -11.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.41 5.77 -67.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993590556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.427 kcal (2) G-P(sol) polarization free energy of solvation -73.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds