Wall clock time and date at job start Wed Apr 1 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58656 * 2 1 4 4 C 1.53197 * 109.58847 * 120.28476 * 2 1 3 5 5 H 1.09002 * 109.49580 * 294.40524 * 4 2 1 6 6 N 1.46503 * 109.49663 * 54.46977 * 4 2 1 7 7 C 1.34775 * 119.99859 * 205.00076 * 6 4 2 8 8 O 1.21608 * 120.00065 * 0.02562 * 7 6 4 9 9 C 1.47402 * 119.99984 * 180.02562 * 7 6 4 10 10 C 1.37355 * 128.56159 * 0.02562 * 9 7 6 11 11 O 1.33500 * 106.33939 * 179.97438 * 10 9 7 12 12 N 1.20660 * 113.15394 * 359.97438 * 11 10 9 13 13 C 1.30013 * 112.30256 * 0.02562 * 12 11 10 14 14 C 1.50702 * 127.33504 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47134 * 5.02618 * 14 13 12 16 16 F 1.39900 * 109.46993 * 125.01751 * 14 13 12 17 17 F 1.39893 * 109.47267 * 245.02290 * 14 13 12 18 18 C 1.53038 * 109.31151 * 174.41961 * 4 2 1 19 19 C 1.53039 * 109.54224 * 298.63385 * 18 4 2 20 20 C 1.53191 * 109.30890 * 61.36462 * 19 18 4 21 21 N 1.46921 * 108.78137 * 305.36452 * 20 19 18 22 22 C 1.36935 * 120.63429 * 233.63360 * 21 20 19 23 23 H 1.08000 * 119.99858 * 150.14246 * 22 21 20 24 24 C 1.38810 * 120.00008 * 330.14589 * 22 21 20 25 25 N 1.31615 * 119.99644 * 344.50049 * 24 22 21 26 26 Si 1.86801 * 119.99959 * 164.50136 * 24 22 21 27 27 H 1.48494 * 109.46928 * 60.00124 * 26 24 22 28 28 H 1.48503 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46899 * 299.99734 * 26 24 22 30 30 H 1.08998 * 109.46953 * 299.71205 * 1 2 3 31 31 H 1.08999 * 109.47306 * 59.71478 * 1 2 3 32 32 H 1.09005 * 109.46988 * 179.71846 * 1 2 3 33 33 H 0.97001 * 120.00242 * 25.00028 * 6 4 2 34 34 H 1.07996 * 126.83626 * 0.22817 * 10 9 7 35 35 H 1.09003 * 109.45890 * 58.65929 * 18 4 2 36 36 H 1.09002 * 109.46076 * 178.61029 * 18 4 2 37 37 H 1.08997 * 109.49528 * 301.41373 * 19 18 4 38 38 H 1.09003 * 109.52267 * 181.33568 * 19 18 4 39 39 H 1.09002 * 109.58540 * 185.57382 * 20 19 18 40 40 H 1.09004 * 109.58961 * 65.16040 * 20 19 18 41 41 H 0.97010 * 119.99627 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7656 -0.1645 2.1371 6 7 1.4514 -2.0664 1.3097 7 6 1.3284 -2.6933 2.4964 8 8 1.7086 -2.1478 3.5146 9 6 0.7331 -4.0403 2.5601 10 6 0.2505 -4.8126 1.5319 11 8 -0.1837 -5.9469 2.0860 12 7 -0.0372 -5.9765 3.2833 13 6 0.5103 -4.8894 3.7404 14 6 0.8450 -4.5677 5.1741 15 9 0.5800 -5.6828 5.9764 16 9 2.1999 -4.2337 5.2730 17 9 0.0659 -3.4883 5.6040 18 6 3.5675 -0.8466 1.1711 19 6 3.9569 -1.6658 -0.0615 20 6 3.4650 -0.9486 -1.3225 21 7 2.0225 -0.7011 -1.1937 22 6 1.1536 -1.1162 -2.1672 23 1 0.1398 -1.3833 -1.9079 24 6 1.5759 -1.1938 -3.4872 25 7 2.6863 -0.5933 -3.8593 26 14 0.5680 -2.1507 -4.7355 27 1 -0.7926 -1.5630 -4.8280 28 1 1.2286 -2.0800 -6.0636 29 1 0.4667 -3.5689 -4.3073 30 1 -0.3633 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.1478 -2.5014 0.4976 34 1 0.2305 -4.5554 0.4832 35 1 4.0061 0.1487 1.0991 36 1 3.9379 -1.3422 2.0685 37 1 3.4984 -2.6529 -0.0019 38 1 5.0412 -1.7703 -0.1017 39 1 3.6518 -1.5745 -2.1952 40 1 3.9903 0.0002 -1.4318 41 1 2.9812 -0.6472 -4.7819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993590561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:26 Heat of formation + Delta-G solvation = -97.020569 kcal Electronic energy + Delta-G solvation = -32321.688020 eV Core-core repulsion = 27405.111183 eV Total energy + Delta-G solvation = -4916.576837 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.29395 -47.85163 -47.74675 -45.57230 -39.90004 -37.74242 -34.59119 -34.17633 -32.97922 -32.32009 -31.64862 -29.54137 -27.51539 -26.47375 -25.22822 -24.88555 -22.26547 -22.21273 -21.06078 -20.67895 -19.34697 -18.86022 -18.80954 -18.45040 -18.03955 -17.97850 -16.56863 -16.24672 -15.60254 -15.16148 -14.96893 -14.71949 -14.60709 -14.44291 -14.18134 -14.07987 -13.90902 -13.88229 -13.75497 -13.60213 -13.22827 -13.09088 -12.69109 -12.64728 -12.29298 -11.95631 -11.41010 -11.36457 -11.09231 -11.07701 -10.82951 -10.74916 -10.65264 -10.25302 -10.20943 -10.12881 -10.05023 -9.79498 -9.42940 -8.75770 -8.59564 -6.79995 -5.93348 -3.40032 0.69019 0.89590 2.02187 2.46475 3.11642 3.12267 3.18209 3.25351 3.31305 3.34333 3.47045 4.13942 4.18142 4.33410 4.38081 4.51152 4.91559 5.09039 5.19699 5.21269 5.44114 5.48109 5.62502 5.83964 5.98368 6.10160 6.19647 6.29778 6.42015 6.49651 6.56211 6.65864 6.81037 6.82963 6.92449 7.25807 7.43888 7.54544 7.64636 7.69072 8.25496 8.30007 9.05486 9.68349 10.26040 11.14499 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003587 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.450673 B = 7805.157636 C = 8732.061469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.158 3.842 3 H 0.043 0.957 4 C 0.135 3.865 5 H 0.081 0.919 6 N -0.687 5.687 7 C 0.582 3.418 8 O -0.527 6.527 9 C -0.203 4.203 10 C 0.008 3.992 11 O 0.130 5.870 12 N -0.299 5.299 13 C -0.041 4.041 14 C 0.564 3.436 15 F -0.169 7.169 16 F -0.152 7.152 17 F -0.156 7.156 18 C -0.122 4.122 19 C -0.140 4.140 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.263 4.263 23 H 0.070 0.930 24 C 0.010 3.990 25 N -0.897 5.897 26 Si 0.900 3.100 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.408 0.592 34 H 0.244 0.756 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -7.048 11.160 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.060 0.940 4 C 0.030 3.970 5 H 0.099 0.901 6 N -0.337 5.337 7 C 0.366 3.634 8 O -0.405 6.405 9 C -0.211 4.211 10 C -0.073 4.073 11 O 0.058 5.942 12 N 0.004 4.996 13 C -0.205 4.205 14 C 0.508 3.492 15 F -0.150 7.150 16 F -0.133 7.133 17 F -0.138 7.138 18 C -0.161 4.161 19 C -0.179 4.179 20 C 0.046 3.954 21 N -0.310 5.310 22 C -0.393 4.393 23 H 0.088 0.912 24 C -0.190 4.190 25 N -0.540 5.540 26 Si 0.729 3.271 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.244 0.756 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.037 0.963 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.475 -7.724 12.322 14.952 hybrid contribution -0.171 0.111 -1.236 1.253 sum -3.646 -7.613 11.086 13.934 Atomic orbital electron populations 1.21788 0.95543 1.01346 1.00666 1.20739 0.93402 0.94054 0.86707 0.93980 1.21666 0.93077 0.81982 1.00311 0.90094 1.45812 1.61021 1.18963 1.07926 1.16756 0.79195 0.82678 0.84820 1.90841 1.49665 1.65898 1.34108 1.22368 1.08884 0.99223 0.90672 1.26746 0.94854 0.84451 1.01268 1.84621 1.59740 1.35342 1.14473 1.73732 1.13915 1.19422 0.92541 1.24619 1.06295 0.93423 0.96124 1.16454 0.75650 0.74755 0.82346 1.93239 1.93783 1.52657 1.75369 1.93298 1.31483 1.92268 1.96221 1.93273 1.74601 1.55530 1.90367 1.21785 0.95130 1.00764 0.98399 1.22144 0.99130 0.99385 0.97288 1.20800 0.83139 0.97262 0.94228 1.44174 1.03123 1.64740 1.18952 1.19073 0.95212 1.38790 0.86201 0.91224 1.25121 0.97705 0.99164 0.97017 1.70010 1.23928 1.43107 1.16931 0.86435 0.79690 0.80060 0.80888 1.20869 1.21686 1.20961 0.94078 0.91634 0.92955 0.75563 0.74034 0.91606 0.92919 0.92988 0.93307 0.89610 0.96291 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.73 37.16 0.29 -1.90 16 2 C 0.16 2.81 3.20 -67.59 -0.22 2.59 16 3 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.14 2.15 2.33 -67.81 -0.16 1.99 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.69 -9.91 3.46 -54.77 -0.19 -10.10 16 7 C 0.58 8.70 7.78 -12.53 -0.10 8.60 16 8 O -0.53 -9.42 15.19 5.27 0.08 -9.34 16 9 C -0.20 -2.57 6.47 -102.90 -0.67 -3.24 16 10 C 0.01 0.07 11.85 30.41 0.36 0.43 16 11 O 0.13 1.32 11.06 18.63 0.21 1.53 16 12 N -0.30 -3.72 11.85 34.78 0.41 -3.31 16 13 C -0.04 -0.55 6.83 -79.77 -0.54 -1.10 16 14 C 0.56 7.85 3.01 36.01 0.11 7.96 16 15 F -0.17 -2.22 17.19 2.25 0.04 -2.18 16 16 F -0.15 -2.27 16.38 2.25 0.04 -2.23 16 17 F -0.16 -2.28 17.24 2.25 0.04 -2.24 16 18 C -0.12 -1.97 5.58 -26.69 -0.15 -2.12 16 19 C -0.14 -2.41 5.93 -26.61 -0.16 -2.56 16 20 C 0.17 3.58 5.28 -3.71 -0.02 3.56 16 21 N -0.59 -12.18 2.64 -164.77 -0.44 -12.61 16 22 C -0.26 -5.99 8.58 -15.06 -0.13 -6.12 16 23 H 0.07 1.50 6.23 -52.49 -0.33 1.18 16 24 C 0.01 0.24 4.94 -17.43 -0.09 0.16 16 25 N -0.90 -23.60 11.23 55.49 0.62 -22.98 16 26 Si 0.90 19.28 29.58 -169.99 -5.03 14.25 16 27 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 32 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 33 H 0.41 5.60 6.96 -40.82 -0.28 5.32 16 34 H 0.24 1.34 7.68 -52.49 -0.40 0.94 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.03 6.15 -51.93 -0.32 1.72 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -27.98 349.97 -4.93 -32.90 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.52 Total: 2.80 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -1.47 Total: 8.25 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.41 Total: -49.00 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.29 Total: -7.82 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 0.11 Total: -6.65 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.98 -4.93 -32.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993590561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.117 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds