Wall clock time and date at job start Wed Apr 1 2020 06:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58656 * 2 1 4 4 C 1.53197 * 109.58847 * 120.28476 * 2 1 3 5 5 H 1.09002 * 109.49580 * 294.40524 * 4 2 1 6 6 N 1.46503 * 109.49663 * 54.46977 * 4 2 1 7 7 C 1.34775 * 119.99859 * 205.00076 * 6 4 2 8 8 O 1.21608 * 120.00065 * 0.02562 * 7 6 4 9 9 C 1.47402 * 119.99984 * 180.02562 * 7 6 4 10 10 C 1.37355 * 128.56159 * 0.02562 * 9 7 6 11 11 O 1.33500 * 106.33939 * 179.97438 * 10 9 7 12 12 N 1.20660 * 113.15394 * 359.97438 * 11 10 9 13 13 C 1.30013 * 112.30256 * 0.02562 * 12 11 10 14 14 C 1.50702 * 127.33504 * 179.97438 * 13 12 11 15 15 F 1.39900 * 109.47134 * 5.02618 * 14 13 12 16 16 F 1.39900 * 109.46993 * 125.01751 * 14 13 12 17 17 F 1.39893 * 109.47267 * 245.02290 * 14 13 12 18 18 C 1.53038 * 109.31151 * 174.41961 * 4 2 1 19 19 C 1.53039 * 109.54224 * 298.63385 * 18 4 2 20 20 C 1.53191 * 109.30890 * 61.36462 * 19 18 4 21 21 N 1.46921 * 108.78137 * 305.36452 * 20 19 18 22 22 C 1.36935 * 120.63429 * 233.63360 * 21 20 19 23 23 H 1.08000 * 119.99858 * 150.14246 * 22 21 20 24 24 C 1.38810 * 120.00008 * 330.14589 * 22 21 20 25 25 N 1.31615 * 119.99644 * 344.50049 * 24 22 21 26 26 Si 1.86801 * 119.99959 * 164.50136 * 24 22 21 27 27 H 1.48494 * 109.46928 * 60.00124 * 26 24 22 28 28 H 1.48503 * 109.46818 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.46899 * 299.99734 * 26 24 22 30 30 H 1.08998 * 109.46953 * 299.71205 * 1 2 3 31 31 H 1.08999 * 109.47306 * 59.71478 * 1 2 3 32 32 H 1.09005 * 109.46988 * 179.71846 * 1 2 3 33 33 H 0.97001 * 120.00242 * 25.00028 * 6 4 2 34 34 H 1.07996 * 126.83626 * 0.22817 * 10 9 7 35 35 H 1.09003 * 109.45890 * 58.65929 * 18 4 2 36 36 H 1.09002 * 109.46076 * 178.61029 * 18 4 2 37 37 H 1.08997 * 109.49528 * 301.41373 * 19 18 4 38 38 H 1.09003 * 109.52267 * 181.33568 * 19 18 4 39 39 H 1.09002 * 109.58540 * 185.57382 * 20 19 18 40 40 H 1.09004 * 109.58961 * 65.16040 * 20 19 18 41 41 H 0.97010 * 119.99627 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7656 -0.1645 2.1371 6 7 1.4514 -2.0664 1.3097 7 6 1.3284 -2.6933 2.4964 8 8 1.7086 -2.1478 3.5146 9 6 0.7331 -4.0403 2.5601 10 6 0.2505 -4.8126 1.5319 11 8 -0.1837 -5.9469 2.0860 12 7 -0.0372 -5.9765 3.2833 13 6 0.5103 -4.8894 3.7404 14 6 0.8450 -4.5677 5.1741 15 9 0.5800 -5.6828 5.9764 16 9 2.1999 -4.2337 5.2730 17 9 0.0659 -3.4883 5.6040 18 6 3.5675 -0.8466 1.1711 19 6 3.9569 -1.6658 -0.0615 20 6 3.4650 -0.9486 -1.3225 21 7 2.0225 -0.7011 -1.1937 22 6 1.1536 -1.1162 -2.1672 23 1 0.1398 -1.3833 -1.9079 24 6 1.5759 -1.1938 -3.4872 25 7 2.6863 -0.5933 -3.8593 26 14 0.5680 -2.1507 -4.7355 27 1 -0.7926 -1.5630 -4.8280 28 1 1.2286 -2.0800 -6.0636 29 1 0.4667 -3.5689 -4.3073 30 1 -0.3633 0.5093 0.8925 31 1 -0.3634 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.1478 -2.5014 0.4976 34 1 0.2305 -4.5554 0.4832 35 1 4.0061 0.1487 1.0991 36 1 3.9379 -1.3422 2.0685 37 1 3.4984 -2.6529 -0.0019 38 1 5.0412 -1.7703 -0.1017 39 1 3.6518 -1.5745 -2.1952 40 1 3.9903 0.0002 -1.4318 41 1 2.9812 -0.6472 -4.7819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993590561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:25 Heat of formation + Delta-G solvation = -112.821051 kcal Electronic energy + Delta-G solvation = -32322.373180 eV Core-core repulsion = 27405.111183 eV Total energy + Delta-G solvation = -4917.261997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.37193 -48.91669 -48.85597 -46.49229 -41.16089 -39.13938 -35.66452 -35.52179 -34.24538 -33.62519 -33.04953 -31.04693 -28.57012 -27.86793 -26.81087 -26.01734 -23.71324 -23.21185 -22.39515 -21.99788 -20.43516 -20.09729 -19.90414 -19.50829 -19.06201 -18.99259 -18.19731 -17.32251 -17.00676 -16.57849 -16.23527 -15.84627 -15.71740 -15.65015 -15.59348 -15.26949 -15.05065 -15.01351 -14.98633 -14.90260 -14.67502 -14.42571 -14.19152 -13.67526 -13.53757 -13.18175 -12.91032 -12.82298 -12.63498 -12.39296 -12.30143 -12.12985 -12.01528 -11.90099 -11.62799 -11.36306 -11.25965 -11.11471 -10.97655 -10.42107 -9.98927 -8.55322 -7.75340 -5.22671 -0.17960 -0.03498 1.03318 1.58341 1.59666 1.60430 1.65246 2.01294 2.08997 2.15238 2.46908 2.60590 3.06719 3.20899 3.41513 3.43182 3.57328 3.64206 3.90409 4.08162 4.09925 4.24795 4.39607 4.43939 4.62005 4.71364 4.81438 5.00223 5.04103 5.07331 5.17001 5.27209 5.39622 5.50056 5.56998 5.63084 5.81427 5.85919 6.49500 6.50895 6.62980 7.11997 7.25907 7.95629 8.49851 9.31414 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003587 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.450673 B = 7805.157636 C = 8732.061469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.030 0.970 4 C 0.147 3.853 5 H 0.084 0.916 6 N -0.680 5.680 7 C 0.588 3.412 8 O -0.561 6.561 9 C -0.231 4.231 10 C 0.050 3.950 11 O 0.147 5.853 12 N -0.308 5.308 13 C -0.057 4.057 14 C 0.561 3.439 15 F -0.167 7.167 16 F -0.161 7.161 17 F -0.163 7.163 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.180 3.820 21 N -0.595 5.595 22 C -0.248 4.248 23 H 0.088 0.912 24 C -0.047 4.047 25 N -0.938 5.938 26 Si 0.957 3.043 27 H -0.280 1.280 28 H -0.312 1.312 29 H -0.266 1.266 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.413 0.587 34 H 0.284 0.716 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.056 0.944 40 H -0.010 1.010 41 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -8.526 11.473 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.047 0.953 4 C 0.040 3.960 5 H 0.102 0.898 6 N -0.331 5.331 7 C 0.373 3.627 8 O -0.440 6.440 9 C -0.240 4.240 10 C -0.030 4.030 11 O 0.073 5.927 12 N -0.003 5.003 13 C -0.220 4.220 14 C 0.506 3.494 15 F -0.148 7.148 16 F -0.142 7.142 17 F -0.144 7.144 18 C -0.156 4.156 19 C -0.165 4.165 20 C 0.054 3.946 21 N -0.319 5.319 22 C -0.377 4.377 23 H 0.106 0.894 24 C -0.243 4.243 25 N -0.584 5.584 26 Si 0.786 3.214 27 H -0.206 1.206 28 H -0.239 1.239 29 H -0.192 1.192 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.251 0.749 34 H 0.299 0.701 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.008 0.992 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.024 -9.228 12.680 16.467 hybrid contribution 0.280 0.597 -1.307 1.464 sum -4.744 -8.631 11.372 15.044 Atomic orbital electron populations 1.21722 0.93951 1.02168 1.00832 1.20835 0.94685 0.93360 0.86118 0.95288 1.21392 0.92779 0.82711 0.99082 0.89844 1.45659 1.60919 1.18350 1.08167 1.16904 0.78426 0.83201 0.84141 1.90829 1.51119 1.66948 1.35153 1.22107 1.11402 0.98857 0.91597 1.27401 0.91166 0.82593 1.01869 1.84631 1.58896 1.35461 1.13667 1.73748 1.13958 1.19140 0.93438 1.24557 1.07379 0.94157 0.95881 1.16550 0.75185 0.74621 0.83055 1.93237 1.93715 1.52415 1.75458 1.93272 1.32221 1.92380 1.96335 1.93252 1.74695 1.55946 1.90547 1.21734 0.95456 1.00634 0.97760 1.21954 0.99708 0.99212 0.95601 1.20562 0.83415 0.95662 0.94958 1.44358 1.02860 1.65211 1.19439 1.19502 0.95788 1.36271 0.86178 0.89427 1.25794 0.98767 1.00769 0.98929 1.70185 1.26078 1.45673 1.16434 0.85509 0.78062 0.79789 0.78017 1.20624 1.23896 1.19175 0.92008 0.93438 0.91708 0.74888 0.70066 0.91590 0.92617 0.92232 0.92335 0.92540 0.99165 0.94650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 7.73 71.98 0.56 -3.28 16 2 C 0.16 5.31 3.20 44.97 0.14 5.45 16 3 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 4 C 0.15 4.36 2.33 45.07 0.10 4.46 16 5 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 6 N -0.68 -17.69 3.46 -445.44 -1.54 -19.23 16 7 C 0.59 16.17 7.78 86.66 0.67 16.85 16 8 O -0.56 -19.23 15.19 -4.06 -0.06 -19.29 16 9 C -0.23 -5.19 6.47 -18.75 -0.12 -5.31 16 10 C 0.05 0.70 11.85 67.61 0.80 1.50 16 11 O 0.15 2.43 11.06 76.92 0.85 3.28 16 12 N -0.31 -6.87 11.85 -44.78 -0.53 -7.40 16 13 C -0.06 -1.43 6.83 45.16 0.31 -1.12 16 14 C 0.56 15.20 3.01 71.24 0.21 15.42 16 15 F -0.17 -4.26 17.19 44.97 0.77 -3.49 16 16 F -0.16 -4.75 16.38 44.97 0.74 -4.01 16 17 F -0.16 -4.66 17.24 44.97 0.78 -3.88 16 18 C -0.12 -3.60 5.58 30.62 0.17 -3.43 16 19 C -0.13 -4.14 5.93 30.67 0.18 -3.96 16 20 C 0.18 7.53 5.28 86.36 0.46 7.99 16 21 N -0.59 -24.12 2.64 -675.21 -1.78 -25.90 16 22 C -0.25 -10.86 8.58 84.03 0.72 -10.14 16 23 H 0.09 3.50 6.23 -2.91 -0.02 3.48 16 24 C -0.05 -2.27 4.94 84.86 0.42 -1.86 16 25 N -0.94 -50.43 11.23 21.65 0.24 -50.19 16 26 Si 0.96 39.00 29.58 68.60 2.03 41.03 16 27 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.31 -13.67 7.11 99.48 0.71 -12.97 16 29 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.58 7.67 -2.39 -0.02 1.56 16 32 H 0.06 1.75 6.37 -2.38 -0.02 1.73 16 33 H 0.41 9.79 6.96 -92.71 -0.65 9.14 16 34 H 0.28 1.41 7.68 -2.91 -0.02 1.39 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 37 H 0.06 1.88 7.53 -2.39 -0.02 1.86 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 2.72 6.15 -2.39 -0.01 2.70 16 40 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.24 13.13 8.31 -92.70 -0.77 12.36 16 Total: -1.00 -61.45 349.97 6.59 -54.87 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.46 Total: 11.64 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 4.63 Total: 22.58 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.61 Total: -102.72 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.79 Total: -16.01 kcal Atomic # 9 Polarization: -13.67 SS G_CDS: 2.28 Total: -11.38 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -61.45 6.59 -54.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993590561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.955 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds