Wall clock time and date at job start Wed Apr 1 2020 06:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58795 * 2 1 4 4 C 1.53196 * 109.58677 * 120.42862 * 2 1 3 5 5 H 1.09005 * 109.49458 * 294.37398 * 4 2 1 6 6 N 1.46497 * 109.49721 * 54.46827 * 4 2 1 7 7 C 1.34775 * 119.99843 * 205.00185 * 6 4 2 8 8 O 1.21678 * 120.00342 * 359.97438 * 7 6 4 9 9 C 1.46728 * 119.99959 * 179.97438 * 7 6 4 10 10 O 1.35344 * 126.64431 * 359.69323 * 9 7 6 11 11 C 1.33660 * 107.68579 * 179.87272 * 10 9 7 12 12 N 1.30614 * 109.15358 * 0.39381 * 11 10 9 13 13 C 1.33691 * 108.99529 * 359.75335 * 12 11 10 14 14 C 1.50699 * 126.27166 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.47350 * 270.02136 * 14 13 12 16 16 F 1.39901 * 109.47801 * 30.02304 * 14 13 12 17 17 F 1.39900 * 109.47269 * 150.02344 * 14 13 12 18 18 C 1.53036 * 109.31379 * 174.42132 * 4 2 1 19 19 C 1.53044 * 109.53638 * 298.63405 * 18 4 2 20 20 C 1.53192 * 109.31105 * 61.36518 * 19 18 4 21 21 N 1.46921 * 109.58279 * 239.71472 * 2 1 3 22 22 C 1.36934 * 120.63582 * 6.58707 * 21 2 1 23 23 H 1.08007 * 119.99763 * 331.58066 * 22 21 2 24 24 C 1.38816 * 120.00463 * 151.58146 * 22 21 2 25 25 N 1.31618 * 119.99585 * 160.52880 * 24 22 21 26 26 Si 1.86797 * 119.99875 * 340.52820 * 24 22 21 27 27 H 1.48491 * 109.47083 * 94.85134 * 26 24 22 28 28 H 1.48497 * 109.47113 * 214.85632 * 26 24 22 29 29 H 1.48498 * 109.46869 * 334.85053 * 26 24 22 30 30 H 1.08998 * 109.47365 * 180.28880 * 1 2 3 31 31 H 1.09004 * 109.46837 * 300.28093 * 1 2 3 32 32 H 1.08999 * 109.47194 * 60.28131 * 1 2 3 33 33 H 0.97001 * 120.00538 * 24.99720 * 6 4 2 34 34 H 1.07999 * 125.42564 * 180.14403 * 11 10 9 35 35 H 1.08998 * 109.46239 * 178.61472 * 18 4 2 36 36 H 1.09000 * 109.46146 * 58.65353 * 18 4 2 37 37 H 1.09003 * 109.50014 * 301.41682 * 19 18 4 38 38 H 1.08997 * 109.50129 * 181.31479 * 19 18 4 39 39 H 1.08997 * 109.58741 * 65.15445 * 20 19 18 40 40 H 1.09001 * 109.58427 * 185.57559 * 20 19 18 41 41 H 0.97004 * 119.99168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.7660 -0.1695 2.1366 6 7 1.4514 -2.0696 1.3045 7 6 1.3284 -2.6995 2.4897 8 8 1.7096 -2.1566 3.5097 9 6 0.7347 -4.0400 2.5499 10 8 0.2634 -4.7623 1.5068 11 6 -0.1877 -5.9246 1.9887 12 7 -0.0218 -5.9447 3.2841 13 6 0.5458 -4.7968 3.6680 14 6 0.9094 -4.4100 5.0784 15 9 -0.1724 -3.7540 5.6757 16 9 1.2202 -5.5599 5.8121 17 9 2.0179 -3.5568 5.0569 18 6 3.5675 -0.8495 1.1691 19 6 3.9569 -1.6657 -0.0656 20 6 3.4650 -0.9453 -1.3249 21 7 2.0225 -0.6981 -1.1953 22 6 1.1536 -1.1107 -2.1699 23 1 0.1333 -1.3565 -1.9149 24 6 1.5841 -1.2132 -3.4857 25 7 0.9106 -1.9507 -4.3428 26 14 3.1193 -0.3045 -4.0395 27 1 4.2903 -1.2136 -3.9548 28 1 2.9462 0.1505 -5.4424 29 1 3.3417 0.8723 -3.1615 30 1 -0.3634 -1.0276 0.0052 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.1478 -2.5026 0.4914 34 1 -0.6239 -6.7188 1.4011 35 1 3.9378 -1.3475 2.0652 36 1 4.0062 0.1459 1.0995 37 1 3.4982 -2.6529 -0.0086 38 1 5.0411 -1.7696 -0.1060 39 1 3.9903 0.0037 -1.4317 40 1 3.6518 -1.5690 -2.1991 41 1 1.2117 -2.0226 -5.2622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993628486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:25 Heat of formation + Delta-G solvation = -123.839703 kcal Electronic energy + Delta-G solvation = -32584.672206 eV Core-core repulsion = 27666.932404 eV Total energy + Delta-G solvation = -4917.739802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.12720 -47.68717 -47.55290 -43.96018 -40.05136 -38.03759 -35.68495 -34.26208 -32.82233 -32.03661 -31.46872 -30.18097 -27.16130 -26.44072 -25.03951 -24.32345 -22.93240 -22.28868 -21.33866 -20.68936 -19.27996 -19.04789 -18.59595 -18.29016 -17.92842 -17.19032 -16.64765 -16.18422 -15.80103 -15.50291 -15.05998 -14.75893 -14.62653 -14.45157 -14.25209 -14.08995 -13.98747 -13.77530 -13.68394 -13.61075 -13.53702 -13.31570 -12.67603 -12.53229 -12.22246 -12.07936 -11.83871 -11.69761 -11.38628 -11.35663 -10.95143 -10.78941 -10.65603 -10.42297 -10.25539 -10.04654 -9.71730 -9.63764 -9.57489 -8.91593 -8.72893 -7.10580 -6.06785 -3.46008 0.26932 1.81825 1.89735 2.41772 2.84120 3.07207 3.24153 3.34946 3.41597 3.42674 3.68296 4.25351 4.29944 4.42389 4.57535 4.72286 4.82838 4.98599 5.09047 5.21878 5.33231 5.37371 5.48084 5.57892 5.81342 5.90607 5.94824 6.13251 6.17129 6.21201 6.31388 6.37710 6.50779 6.60984 6.63234 6.78949 6.86715 6.90748 7.50733 7.81968 8.02836 8.20427 8.79337 9.59489 9.95250 11.08076 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003583 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.633961 B = 7811.860299 C = 8438.036624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.163 3.837 3 H 0.050 0.950 4 C 0.131 3.869 5 H 0.088 0.912 6 N -0.678 5.678 7 C 0.586 3.414 8 O -0.502 6.502 9 C -0.016 4.016 10 O -0.167 6.167 11 C 0.214 3.786 12 N -0.462 5.462 13 C -0.041 4.041 14 C 0.553 3.447 15 F -0.168 7.168 16 F -0.169 7.169 17 F -0.139 7.139 18 C -0.124 4.124 19 C -0.134 4.134 20 C 0.125 3.875 21 N -0.603 5.603 22 C -0.267 4.267 23 H 0.093 0.907 24 C 0.029 3.971 25 N -0.906 5.906 26 Si 0.882 3.118 27 H -0.290 1.290 28 H -0.304 1.304 29 H -0.269 1.269 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.269 0.731 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -4.802 13.586 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.056 3.944 3 H 0.068 0.932 4 C 0.026 3.974 5 H 0.106 0.894 6 N -0.329 5.329 7 C 0.368 3.632 8 O -0.379 6.379 9 C -0.076 4.076 10 O -0.051 6.051 11 C -0.012 4.012 12 N -0.189 5.189 13 C -0.167 4.167 14 C 0.498 3.502 15 F -0.149 7.149 16 F -0.150 7.150 17 F -0.120 7.120 18 C -0.162 4.162 19 C -0.174 4.174 20 C 0.000 4.000 21 N -0.328 5.328 22 C -0.395 4.395 23 H 0.110 0.890 24 C -0.171 4.171 25 N -0.548 5.548 26 Si 0.713 3.287 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.194 1.194 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.284 0.716 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.038 -4.914 14.451 15.263 hybrid contribution 0.899 0.506 -1.280 1.644 sum 0.861 -4.408 13.171 13.915 Atomic orbital electron populations 1.21820 0.94722 1.01986 1.01041 1.20758 0.94137 0.93891 0.85633 0.93245 1.21725 0.93079 0.82051 1.00589 0.89365 1.45977 1.59687 1.18717 1.08493 1.16419 0.79726 0.81585 0.85446 1.90988 1.49491 1.63830 1.33584 1.23384 1.03114 0.95819 0.85244 1.84698 1.57741 1.26506 1.36118 1.28520 0.96070 0.87400 0.89172 1.70165 1.16175 1.20313 1.12255 1.21655 1.06658 0.93617 0.94725 1.16711 0.75805 0.75079 0.82615 1.93234 1.55408 1.81483 1.84819 1.93221 1.92949 1.49984 1.78863 1.93403 1.52361 1.69912 1.96291 1.21807 0.95096 1.00909 0.98390 1.21979 0.99541 0.99773 0.96058 1.21371 0.85018 0.97269 0.96383 1.44505 1.02207 1.65755 1.20311 1.18891 0.95492 1.39193 0.85929 0.88979 1.25291 0.97557 0.98427 0.95793 1.69807 1.41109 1.38954 1.04932 0.86966 0.83354 0.81281 0.77122 1.21780 1.23283 1.19426 0.92512 0.93758 0.91198 0.74395 0.71595 0.92144 0.91201 0.92026 0.92646 0.95440 0.90962 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.73 37.16 0.29 -1.96 16 2 C 0.16 2.77 3.20 -67.60 -0.22 2.56 16 3 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.13 1.99 2.33 -67.81 -0.16 1.84 16 5 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.68 -10.29 3.45 -54.98 -0.19 -10.48 16 7 C 0.59 8.95 7.70 -12.83 -0.10 8.86 16 8 O -0.50 -8.49 12.80 5.21 0.07 -8.42 16 9 C -0.02 -0.23 7.14 -36.84 -0.26 -0.49 16 10 O -0.17 -2.01 10.57 4.43 0.05 -1.96 16 11 C 0.21 1.98 13.21 52.24 0.69 2.67 16 12 N -0.46 -5.73 11.21 -10.89 -0.12 -5.85 16 13 C -0.04 -0.58 6.49 -82.47 -0.54 -1.11 16 14 C 0.55 7.89 3.34 36.01 0.12 8.01 16 15 F -0.17 -2.41 17.30 2.25 0.04 -2.37 16 16 F -0.17 -2.32 17.27 2.25 0.04 -2.28 16 17 F -0.14 -2.14 13.47 2.25 0.03 -2.11 16 18 C -0.12 -1.83 5.58 -26.69 -0.15 -1.98 16 19 C -0.13 -2.18 5.93 -26.61 -0.16 -2.34 16 20 C 0.12 2.45 4.19 -3.71 -0.02 2.43 16 21 N -0.60 -12.35 2.41 -164.77 -0.40 -12.75 16 22 C -0.27 -6.50 9.06 -15.06 -0.14 -6.63 16 23 H 0.09 2.36 6.37 -52.48 -0.33 2.02 16 24 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 25 N -0.91 -25.70 13.97 55.49 0.78 -24.92 16 26 Si 0.88 20.96 24.35 -169.99 -4.14 16.82 16 27 H -0.29 -6.74 6.72 56.52 0.38 -6.36 16 28 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.27 -6.27 6.44 56.52 0.36 -5.91 16 30 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.25 7.61 -51.93 -0.40 0.85 16 33 H 0.42 6.75 7.57 -40.82 -0.31 6.44 16 34 H 0.27 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.54 6.95 -51.93 -0.36 0.18 16 40 H 0.07 1.58 4.61 -51.93 -0.24 1.34 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 339.91 15.07 5.12 5.12 Total: -1.00 -29.78 339.91 -3.94 -33.72 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.49 Total: 2.97 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.72 Total: 12.51 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.07 Total: -54.00 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.11 Total: -10.39 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.78 -3.94 -33.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.117 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds