Wall clock time and date at job start Wed Apr 1 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.58795 * 2 1 4 4 C 1.53196 * 109.58677 * 120.42862 * 2 1 3 5 5 H 1.09005 * 109.49458 * 294.37398 * 4 2 1 6 6 N 1.46497 * 109.49721 * 54.46827 * 4 2 1 7 7 C 1.34775 * 119.99843 * 205.00185 * 6 4 2 8 8 O 1.21678 * 120.00342 * 359.97438 * 7 6 4 9 9 C 1.46728 * 119.99959 * 179.97438 * 7 6 4 10 10 O 1.35344 * 126.64431 * 359.69323 * 9 7 6 11 11 C 1.33660 * 107.68579 * 179.87272 * 10 9 7 12 12 N 1.30614 * 109.15358 * 0.39381 * 11 10 9 13 13 C 1.33691 * 108.99529 * 359.75335 * 12 11 10 14 14 C 1.50699 * 126.27166 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.47350 * 270.02136 * 14 13 12 16 16 F 1.39901 * 109.47801 * 30.02304 * 14 13 12 17 17 F 1.39900 * 109.47269 * 150.02344 * 14 13 12 18 18 C 1.53036 * 109.31379 * 174.42132 * 4 2 1 19 19 C 1.53044 * 109.53638 * 298.63405 * 18 4 2 20 20 C 1.53192 * 109.31105 * 61.36518 * 19 18 4 21 21 N 1.46921 * 109.58279 * 239.71472 * 2 1 3 22 22 C 1.36934 * 120.63582 * 6.58707 * 21 2 1 23 23 H 1.08007 * 119.99763 * 331.58066 * 22 21 2 24 24 C 1.38816 * 120.00463 * 151.58146 * 22 21 2 25 25 N 1.31618 * 119.99585 * 160.52880 * 24 22 21 26 26 Si 1.86797 * 119.99875 * 340.52820 * 24 22 21 27 27 H 1.48491 * 109.47083 * 94.85134 * 26 24 22 28 28 H 1.48497 * 109.47113 * 214.85632 * 26 24 22 29 29 H 1.48498 * 109.46869 * 334.85053 * 26 24 22 30 30 H 1.08998 * 109.47365 * 180.28880 * 1 2 3 31 31 H 1.09004 * 109.46837 * 300.28093 * 1 2 3 32 32 H 1.08999 * 109.47194 * 60.28131 * 1 2 3 33 33 H 0.97001 * 120.00538 * 24.99720 * 6 4 2 34 34 H 1.07999 * 125.42564 * 180.14403 * 11 10 9 35 35 H 1.08998 * 109.46239 * 178.61472 * 18 4 2 36 36 H 1.09000 * 109.46146 * 58.65353 * 18 4 2 37 37 H 1.09003 * 109.50014 * 301.41682 * 19 18 4 38 38 H 1.08997 * 109.50129 * 181.31479 * 19 18 4 39 39 H 1.08997 * 109.58741 * 65.15445 * 20 19 18 40 40 H 1.09001 * 109.58427 * 185.57559 * 20 19 18 41 41 H 0.97004 * 119.99168 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 1 1.7660 -0.1695 2.1366 6 7 1.4514 -2.0696 1.3045 7 6 1.3284 -2.6995 2.4897 8 8 1.7096 -2.1566 3.5097 9 6 0.7347 -4.0400 2.5499 10 8 0.2634 -4.7623 1.5068 11 6 -0.1877 -5.9246 1.9887 12 7 -0.0218 -5.9447 3.2841 13 6 0.5458 -4.7968 3.6680 14 6 0.9094 -4.4100 5.0784 15 9 -0.1724 -3.7540 5.6757 16 9 1.2202 -5.5599 5.8121 17 9 2.0179 -3.5568 5.0569 18 6 3.5675 -0.8495 1.1691 19 6 3.9569 -1.6657 -0.0656 20 6 3.4650 -0.9453 -1.3249 21 7 2.0225 -0.6981 -1.1953 22 6 1.1536 -1.1107 -2.1699 23 1 0.1333 -1.3565 -1.9149 24 6 1.5841 -1.2132 -3.4857 25 7 0.9106 -1.9507 -4.3428 26 14 3.1193 -0.3045 -4.0395 27 1 4.2903 -1.2136 -3.9548 28 1 2.9462 0.1505 -5.4424 29 1 3.3417 0.8723 -3.1615 30 1 -0.3634 -1.0276 0.0052 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.1478 -2.5026 0.4914 34 1 -0.6239 -6.7188 1.4011 35 1 3.9378 -1.3475 2.0652 36 1 4.0062 0.1459 1.0995 37 1 3.4982 -2.6529 -0.0086 38 1 5.0411 -1.7696 -0.1060 39 1 3.9903 0.0037 -1.4317 40 1 3.6518 -1.5690 -2.1991 41 1 1.2117 -2.0226 -5.2622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993628486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:20:24 Heat of formation + Delta-G solvation = -145.474366 kcal Electronic energy + Delta-G solvation = -32585.610355 eV Core-core repulsion = 27666.932404 eV Total energy + Delta-G solvation = -4918.677951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.24716 -48.79758 -48.69364 -44.89267 -41.30135 -39.40594 -36.65969 -35.71891 -34.27766 -33.54728 -32.69338 -31.58589 -28.38622 -27.71495 -26.68102 -25.35472 -24.24696 -23.47374 -22.54961 -22.03225 -20.51556 -20.24770 -19.70351 -19.40899 -19.00970 -18.38836 -18.15334 -17.33799 -17.06422 -16.98328 -16.26856 -15.98427 -15.87718 -15.66031 -15.48238 -15.24534 -15.23347 -15.13026 -14.97928 -14.84219 -14.76291 -14.62883 -14.27836 -13.88271 -13.60767 -13.40940 -13.20237 -13.03521 -12.74283 -12.49434 -12.31444 -12.29510 -12.17051 -11.94624 -11.59376 -11.48094 -11.35421 -11.21151 -10.70859 -10.62092 -10.11896 -8.86392 -8.08000 -5.40825 -0.74213 0.91544 0.96192 1.34503 1.40531 1.47269 1.53066 1.69405 1.97864 2.33811 2.48114 2.66139 3.10781 3.18178 3.30092 3.34113 3.53328 3.76408 3.90030 3.96630 4.05752 4.08203 4.24058 4.47169 4.53455 4.60411 4.77626 4.81187 4.84607 4.92828 4.99283 5.07636 5.13745 5.27098 5.31349 5.43568 5.52404 5.95375 5.97961 6.23898 6.31694 6.82494 6.97194 7.69602 8.09024 9.10441 Molecular weight = 347.12amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.003583 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.633961 B = 7811.860299 C = 8438.036624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.160 3.840 3 H 0.062 0.938 4 C 0.137 3.863 5 H 0.100 0.900 6 N -0.678 5.678 7 C 0.590 3.410 8 O -0.521 6.521 9 C -0.036 4.036 10 O -0.173 6.173 11 C 0.247 3.753 12 N -0.489 5.489 13 C -0.043 4.043 14 C 0.552 3.448 15 F -0.171 7.171 16 F -0.167 7.167 17 F -0.147 7.147 18 C -0.118 4.118 19 C -0.125 4.125 20 C 0.120 3.880 21 N -0.612 5.612 22 C -0.232 4.232 23 H 0.074 0.926 24 C -0.029 4.029 25 N -0.954 5.954 26 Si 0.933 3.067 27 H -0.285 1.285 28 H -0.322 1.322 29 H -0.259 1.259 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.413 0.587 34 H 0.323 0.677 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -4.881 14.933 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 H 0.080 0.920 4 C 0.031 3.969 5 H 0.118 0.882 6 N -0.328 5.328 7 C 0.373 3.627 8 O -0.400 6.400 9 C -0.095 4.095 10 O -0.058 6.058 11 C 0.022 3.978 12 N -0.216 5.216 13 C -0.167 4.167 14 C 0.496 3.504 15 F -0.152 7.152 16 F -0.148 7.148 17 F -0.128 7.128 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.004 4.004 21 N -0.337 5.337 22 C -0.362 4.362 23 H 0.092 0.908 24 C -0.224 4.224 25 N -0.601 5.601 26 Si 0.764 3.236 27 H -0.212 1.212 28 H -0.252 1.252 29 H -0.183 1.183 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.250 0.750 34 H 0.337 0.663 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.561 -4.972 15.863 16.633 hybrid contribution 0.632 0.450 -1.601 1.779 sum 1.193 -4.522 14.262 15.009 Atomic orbital electron populations 1.21751 0.94354 1.01514 1.01362 1.20953 0.94517 0.94342 0.84746 0.92004 1.21647 0.93437 0.82042 0.99732 0.88207 1.45946 1.59809 1.18718 1.08302 1.16465 0.79264 0.81964 0.84966 1.90972 1.50371 1.64617 1.34006 1.23012 1.04891 0.95862 0.85755 1.84718 1.58002 1.27339 1.35759 1.29834 0.92618 0.86763 0.88611 1.70207 1.17555 1.19957 1.13841 1.21639 1.06537 0.94226 0.94314 1.16786 0.75526 0.74965 0.83085 1.93224 1.55460 1.81573 1.84936 1.93219 1.92929 1.49803 1.78898 1.93380 1.52805 1.70239 1.96368 1.21781 0.94637 1.01571 0.97636 1.21864 1.00645 0.98986 0.94916 1.21395 0.84421 0.97450 0.97177 1.44604 1.02328 1.66396 1.20382 1.18867 0.95108 1.35865 0.86311 0.90804 1.25786 1.00158 1.00049 0.96376 1.69921 1.43406 1.41712 1.05042 0.86132 0.81147 0.80599 0.75710 1.21187 1.25230 1.18337 0.93433 0.91007 0.93236 0.75004 0.66316 0.91663 0.89590 0.92967 0.90611 0.94821 0.93384 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.73 71.98 0.56 -3.57 16 2 C 0.16 5.12 3.20 44.98 0.14 5.27 16 3 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 4 C 0.14 3.83 2.33 45.07 0.10 3.93 16 5 H 0.10 2.64 7.58 -2.38 -0.02 2.62 16 6 N -0.68 -19.56 3.45 -446.10 -1.54 -21.10 16 7 C 0.59 17.27 7.70 86.46 0.67 17.94 16 8 O -0.52 -16.95 12.80 -4.28 -0.05 -17.01 16 9 C -0.04 -0.96 7.14 24.05 0.17 -0.79 16 10 O -0.17 -3.84 10.57 -7.06 -0.07 -3.91 16 11 C 0.25 3.82 13.21 130.42 1.72 5.54 16 12 N -0.49 -11.10 11.21 -303.14 -3.40 -14.50 16 13 C -0.04 -1.13 6.49 41.83 0.27 -0.86 16 14 C 0.55 15.31 3.34 71.24 0.24 15.55 16 15 F -0.17 -4.78 17.30 44.97 0.78 -4.00 16 16 F -0.17 -4.46 17.27 44.97 0.78 -3.69 16 17 F -0.15 -4.43 13.47 44.97 0.61 -3.83 16 18 C -0.12 -3.14 5.58 30.62 0.17 -2.97 16 19 C -0.13 -3.76 5.93 30.67 0.18 -3.58 16 20 C 0.12 4.49 4.19 86.36 0.36 4.85 16 21 N -0.61 -24.26 2.41 -675.22 -1.63 -25.89 16 22 C -0.23 -11.29 9.06 84.03 0.76 -10.53 16 23 H 0.07 3.84 6.37 -2.91 -0.02 3.82 16 24 C -0.03 -1.54 5.24 84.86 0.45 -1.09 16 25 N -0.95 -55.59 13.97 21.65 0.30 -55.29 16 26 Si 0.93 43.57 24.35 68.60 1.67 45.24 16 27 H -0.28 -12.84 6.72 99.48 0.67 -12.17 16 28 H -0.32 -15.87 7.11 99.48 0.71 -15.16 16 29 H -0.26 -11.45 6.44 99.48 0.64 -10.81 16 30 H 0.05 1.56 6.40 -2.39 -0.02 1.54 16 31 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.73 7.61 -2.39 -0.02 1.71 16 33 H 0.41 12.92 7.57 -92.71 -0.70 12.22 16 34 H 0.32 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.67 7.53 -2.39 -0.02 1.65 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.03 1.23 6.95 -2.39 -0.02 1.21 16 40 H 0.05 2.04 4.61 -2.39 -0.01 2.03 16 41 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -65.31 339.91 3.54 -61.77 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.31 Total: 12.51 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 5.80 Total: 29.69 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -6.27 Total: -116.77 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.13 Total: -20.92 kcal Atomic # 9 Polarization: -13.68 SS G_CDS: 2.16 Total: -11.52 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.24 kcal Total: -65.31 3.54 -61.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993628486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.700 kcal (2) G-P(sol) polarization free energy of solvation -65.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds